Mutagenetix > Incidental Mutation

Incidental Mutation 'R7248:Wdr6'

563689

Institutional Source

Beutler Lab

Gene Symbol

Wdr6

Ensembl Gene

ENSMUSG00000066357

Gene Name

WD repeat domain 6

Synonyms

MMRRC Submission

045311-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.341) question?

Stock #

R7248 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

108449510-108455862 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 108453238 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Threonine at position 215 (M215T)

Ref Sequence

ENSEMBL: ENSMUSP00000070927 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000006853] [ENSMUST00000019183] [ENSMUST00000068700] [ENSMUST00000193427] [ENSMUST00000195249]

AlphaFold

Q99ME2

Predicted Effect

probably benign
Transcript: ENSMUST00000006853

SMART Domains

Protein: ENSMUSP00000006853
Gene: ENSMUSG00000006675

Domain	Start	End	E-Value	Type
transmembrane domain	61	83	N/A	INTRINSIC
P4Hc	143	460	1.26e-19	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000019183

SMART Domains

Protein: ENSMUSP00000019183
Gene: ENSMUSG00000019039

Domain	Start	End	E-Value	Type
low complexity region	288	301	N/A	INTRINSIC
low complexity region	386	397	N/A	INTRINSIC
DALR_1	399	538	2.09e-22	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000068700
AA Change: M215T

PolyPhen 2 Score 0.821 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000070927
Gene: ENSMUSG00000066357
AA Change: M215T

Domain	Start	End	E-Value	Type
Blast:WD40	109	142	3e-6	BLAST
WD40	198	237	1.42e-4	SMART
WD40	247	284	7.28e-2	SMART
WD40	286	326	1.72e-3	SMART
Blast:WD40	336	375	3e-13	BLAST
WD40	479	519	2.96e1	SMART
low complexity region	537	552	N/A	INTRINSIC
WD40	559	598	1.77e2	SMART
Blast:WD40	600	641	7e-20	BLAST
Blast:WD40	764	815	2e-22	BLAST
Blast:WD40	855	896	2e-11	BLAST
WD40	900	949	1.48e1	SMART
WD40	973	1015	5.52e-2	SMART
WD40	1035	1076	3.98e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000192518

Predicted Effect

probably benign
Transcript: ENSMUST00000193427

SMART Domains

Protein: ENSMUSP00000141748
Gene: ENSMUSG00000019039

Domain	Start	End	E-Value	Type
low complexity region	55	66	N/A	INTRINSIC
DALR_1	68	171	1.3e-7	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000195249

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.4%

Validation Efficiency

97% (75/77)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. The encoded protein interacts with serine/threonine kinase 11, and is implicated in cell growth arrest. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Feb 2016]

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700006A11Rik	A	G	3: 124,207,959 (GRCm39)		probably null	Het
Aldh16a1	A	G	7: 44,795,018 (GRCm39)	Y484H	probably damaging	Het
Arhgap26	T	C	18: 39,439,907 (GRCm39)		probably null	Het
Atxn7l1	A	G	12: 33,417,194 (GRCm39)	T452A	probably benign	Het
Baz1a	C	T	12: 54,947,293 (GRCm39)	E1119K	probably damaging	Het
Btaf1	A	T	19: 36,922,714 (GRCm39)	E39D	possibly damaging	Het
Bud13	G	T	9: 46,194,413 (GRCm39)	E29*	probably null	Het
Ccdc150	C	T	1: 54,344,057 (GRCm39)	T530I	probably benign	Het
Chd6	G	A	2: 160,803,199 (GRCm39)	Q2160*	probably null	Het
Cluap1	T	A	16: 3,737,364 (GRCm39)	I172N	possibly damaging	Het
Cnot2	T	C	10: 116,334,278 (GRCm39)	N329S	probably benign	Het
Cog4	A	T	8: 111,608,834 (GRCm39)	T175S	unknown	Het
Coq7	C	A	7: 118,128,897 (GRCm39)	R46L	probably benign	Het
D630045J12Rik	A	T	6: 38,145,198 (GRCm39)	V1276E	probably damaging	Het
Dcaf15	A	G	8: 84,829,394 (GRCm39)	V116A	possibly damaging	Het
Ddr2	C	T	1: 169,822,198 (GRCm39)	V417I	probably benign	Het
Defa25	G	A	8: 21,575,216 (GRCm39)	C65Y	probably damaging	Het
Dhx38	T	C	8: 110,285,559 (GRCm39)	T425A	probably benign	Het
Diaph1	T	C	18: 38,022,829 (GRCm39)	T782A	probably benign	Het
Dnah7b	T	A	1: 46,181,245 (GRCm39)	M1044K	possibly damaging	Het
Dusp16	G	A	6: 134,695,940 (GRCm39)	T297M	probably benign	Het
Esyt2	A	G	12: 116,305,858 (GRCm39)	N363D	probably damaging	Het
Fasl	C	T	1: 161,615,760 (GRCm39)	C32Y	possibly damaging	Het
Flg	T	C	3: 93,189,041 (GRCm39)	V137A	probably benign	Het
Gm57858	T	A	3: 36,080,086 (GRCm39)	T224S	probably benign	Het
Gpr150	G	A	13: 76,204,126 (GRCm39)	A273V	probably benign	Het
Grk5	A	G	19: 60,879,045 (GRCm39)	T10A	probably benign	Het
Hivep2	A	G	10: 14,006,909 (GRCm39)	K1169R	possibly damaging	Het
Ido2	A	C	8: 25,030,657 (GRCm39)	Y224*	probably null	Het
Ido2	A	G	8: 25,038,839 (GRCm39)	I149T	probably damaging	Het
Iqca1l	C	T	5: 24,749,269 (GRCm39)	S743N	probably benign	Het
Kctd2	A	G	11: 115,312,845 (GRCm39)	T126A	possibly damaging	Het
Khdc4	T	C	3: 88,600,886 (GRCm39)	S228P	probably damaging	Het
Kif1a	T	C	1: 92,969,305 (GRCm39)	D1090G	probably benign	Het
Klrb1a	A	T	6: 128,586,697 (GRCm39)	H222Q	possibly damaging	Het
Kndc1	A	C	7: 139,500,699 (GRCm39)	H688P	probably damaging	Het
Lrriq1	C	A	10: 103,059,611 (GRCm39)	V141F	possibly damaging	Het
Malrd1	A	G	2: 16,106,722 (GRCm39)	I1845V	unknown	Het
Mob3c	G	A	4: 115,688,881 (GRCm39)	R138H	probably benign	Het
Mre11a	T	A	9: 14,723,209 (GRCm39)	D394E	possibly damaging	Het
Myh7b	A	T	2: 155,464,106 (GRCm39)	I536F	probably damaging	Het
Nacad	T	A	11: 6,548,589 (GRCm39)	K1382*	probably null	Het
Ncor1	T	C	11: 62,275,598 (GRCm39)	K128R	possibly damaging	Het
Or10am5	T	C	7: 6,517,520 (GRCm39)	N303D	probably damaging	Het
Ostn	T	A	16: 27,165,719 (GRCm39)		probably null	Het
Pacs1	G	A	19: 5,189,003 (GRCm39)	T793I	probably damaging	Het
Pcdhb2	T	C	18: 37,429,547 (GRCm39)	S507P	probably damaging	Het
Pde2a	A	G	7: 101,152,597 (GRCm39)	K393E	possibly damaging	Het
Pfkl	T	A	10: 77,825,423 (GRCm39)	N656Y	probably damaging	Het
Phf20	T	A	2: 156,135,331 (GRCm39)		probably null	Het
Plekha6	G	T	1: 133,203,586 (GRCm39)	E550*	probably null	Het
Plxna4	A	T	6: 32,139,095 (GRCm39)	V1691E	probably damaging	Het
Rag1	A	T	2: 101,472,123 (GRCm39)	H1006Q	probably damaging	Het
Rfx4	C	T	10: 84,740,919 (GRCm39)	P679L	probably benign	Het
Ripor2	A	G	13: 24,878,128 (GRCm39)	H301R	probably damaging	Het
Rrp12	A	T	19: 41,871,877 (GRCm39)	I469N	possibly damaging	Het
Serpinb6b	A	G	13: 33,161,559 (GRCm39)	T211A	probably benign	Het
Sf1	A	T	19: 6,426,383 (GRCm39)	H547L	unknown	Het
Slc29a1	T	C	17: 45,903,108 (GRCm39)	D9G	probably damaging	Het
Sptan1	T	A	2: 29,892,311 (GRCm39)	M1075K	probably benign	Het
Syngap1	A	G	17: 27,176,741 (GRCm39)	D474G	probably damaging	Het
Syt16	C	T	12: 74,313,483 (GRCm39)	R470C	probably damaging	Het
Timeless	A	G	10: 128,087,870 (GRCm39)	T1148A	probably benign	Het
Tmem116	A	T	5: 121,601,899 (GRCm39)		probably null	Het
Tmem158	A	T	9: 123,089,390 (GRCm39)	I74N	probably damaging	Het
Traf5	T	A	1: 191,743,432 (GRCm39)	D174V	probably benign	Het
Trim65	A	T	11: 116,018,534 (GRCm39)	I247N	probably benign	Het
Tsfm	A	T	10: 126,847,500 (GRCm39)	V197E	probably benign	Het
Utrn	A	G	10: 12,604,562 (GRCm39)	C539R	possibly damaging	Het
Vps13a	A	T	19: 16,655,406 (GRCm39)	F1874Y	probably benign	Het
Wdr75	T	A	1: 45,856,560 (GRCm39)	W528R	probably damaging	Het
Zc3h7b	A	G	15: 81,655,988 (GRCm39)	D112G	possibly damaging	Het
Zc3hav1	C	T	6: 38,330,911 (GRCm39)	D83N	probably benign	Het
Zfp369	T	A	13: 65,443,931 (GRCm39)	V358E	probably damaging	Het
Zfp946	T	A	17: 22,672,489 (GRCm39)	C29*	probably null	Het
Zng1	A	G	19: 24,898,505 (GRCm39)	S318P	probably damaging	Het

Other mutations in Wdr6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01548:Wdr6	APN	9	108,452,096 (GRCm39)	missense	possibly damaging	0.77
IGL01757:Wdr6	APN	9	108,453,427 (GRCm39)	missense	possibly damaging	0.65
IGL02096:Wdr6	APN	9	108,453,752 (GRCm39)	missense	probably damaging	1.00
IGL02577:Wdr6	APN	9	108,453,140 (GRCm39)	missense	possibly damaging	0.88
IGL02625:Wdr6	APN	9	108,452,704 (GRCm39)	missense	probably damaging	1.00
IGL02820:Wdr6	APN	9	108,455,743 (GRCm39)	missense	probably benign	0.28
IGL03250:Wdr6	APN	9	108,450,396 (GRCm39)	missense	possibly damaging	0.95
PIT4802001:Wdr6	UTSW	9	108,451,765 (GRCm39)	missense	probably damaging	1.00
R0038:Wdr6	UTSW	9	108,450,168 (GRCm39)	missense	probably damaging	1.00
R0153:Wdr6	UTSW	9	108,452,441 (GRCm39)	missense	probably damaging	1.00
R0378:Wdr6	UTSW	9	108,453,063 (GRCm39)	missense	probably damaging	1.00
R0420:Wdr6	UTSW	9	108,450,300 (GRCm39)	missense	probably benign	0.41
R1620:Wdr6	UTSW	9	108,451,854 (GRCm39)	missense	possibly damaging	0.51
R1753:Wdr6	UTSW	9	108,452,363 (GRCm39)	missense	probably damaging	0.99
R1844:Wdr6	UTSW	9	108,453,176 (GRCm39)	missense	probably damaging	1.00
R1881:Wdr6	UTSW	9	108,450,378 (GRCm39)	splice site	probably null
R1987:Wdr6	UTSW	9	108,453,733 (GRCm39)	missense	probably damaging	1.00
R2029:Wdr6	UTSW	9	108,452,554 (GRCm39)	missense	probably damaging	1.00
R2139:Wdr6	UTSW	9	108,451,322 (GRCm39)	missense	probably benign	0.00
R3900:Wdr6	UTSW	9	108,452,968 (GRCm39)	missense	probably damaging	1.00
R4021:Wdr6	UTSW	9	108,452,405 (GRCm39)	missense	probably damaging	1.00
R4909:Wdr6	UTSW	9	108,450,187 (GRCm39)	missense	probably benign	0.28
R5073:Wdr6	UTSW	9	108,451,565 (GRCm39)	missense	probably damaging	1.00
R5748:Wdr6	UTSW	9	108,452,981 (GRCm39)	missense	possibly damaging	0.75
R6039:Wdr6	UTSW	9	108,450,994 (GRCm39)	frame shift	probably null
R6039:Wdr6	UTSW	9	108,450,994 (GRCm39)	frame shift	probably null
R6254:Wdr6	UTSW	9	108,452,110 (GRCm39)	missense	probably damaging	1.00
R6724:Wdr6	UTSW	9	108,452,093 (GRCm39)	missense	probably benign	0.11
R7134:Wdr6	UTSW	9	108,450,564 (GRCm39)	missense	probably damaging	1.00
R7296:Wdr6	UTSW	9	108,451,784 (GRCm39)	missense	probably damaging	1.00
R7388:Wdr6	UTSW	9	108,451,971 (GRCm39)	missense	probably damaging	1.00
R7443:Wdr6	UTSW	9	108,451,489 (GRCm39)	missense	probably damaging	1.00
R7467:Wdr6	UTSW	9	108,450,201 (GRCm39)	missense	probably benign	0.14
R7672:Wdr6	UTSW	9	108,450,947 (GRCm39)	missense	probably benign	0.06
R7699:Wdr6	UTSW	9	108,453,560 (GRCm39)	missense	possibly damaging	0.92
R7700:Wdr6	UTSW	9	108,453,560 (GRCm39)	missense	possibly damaging	0.92
R8559:Wdr6	UTSW	9	108,452,593 (GRCm39)	missense	probably benign	0.34
R9076:Wdr6	UTSW	9	108,451,627 (GRCm39)	missense	probably benign	0.18
R9273:Wdr6	UTSW	9	108,450,691 (GRCm39)	missense	probably benign	0.00
R9486:Wdr6	UTSW	9	108,453,182 (GRCm39)	missense	probably damaging	1.00
R9488:Wdr6	UTSW	9	108,453,182 (GRCm39)	missense	probably damaging	1.00
R9679:Wdr6	UTSW	9	108,450,358 (GRCm39)	missense	probably benign	0.27

Predicted Primers

PCR Primer
(F):5'- TCTCCTGCACTGATGAGATAGTTC -3'
(R):5'- CAGTGATAGGGTGCATGCTG -3'

Sequencing Primer
(F):5'- GATAGTTCTCTAAGAGCTTCACCTG -3'
(R):5'- TGCACAGACAGGTGTACCC -3'

Posted On

2019-06-26