Incidental Mutation 'R0579:Vav1'
| ID |
56375 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Vav1
|
| Ensembl Gene |
ENSMUSG00000034116 |
| Gene Name |
vav 1 oncogene |
| Synonyms |
|
| MMRRC Submission |
038769-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.257)
|
| Stock # |
R0579 (G1)
|
| Quality Score |
104 |
|
Status
|
Validated
|
| Chromosome |
17 |
| Chromosomal Location |
57586100-57635031 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to T
at 57586271 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tryptophan to Leucine
at position 25
(W25L)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000126694
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000005889]
[ENSMUST00000112870]
[ENSMUST00000169220]
|
| AlphaFold |
P27870 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000005889
AA Change: W25L
PolyPhen 2
Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
|
| SMART Domains |
Protein: ENSMUSP00000005889
Gene: ENSMUSG00000034116
AA Change: W25L
| Domain | Start | End | E-Value | Type |
|---|
|
CH
|
3 |
115 |
5.69e-15 |
SMART |
|
RhoGEF
|
198 |
372 |
7.89e-62 |
SMART |
|
PH
|
403 |
506 |
8.45e-12 |
SMART |
|
C1
|
516 |
564 |
3.67e-9 |
SMART |
|
SH3
|
595 |
659 |
1.65e-8 |
SMART |
|
SH2
|
669 |
751 |
8.88e-25 |
SMART |
|
SH3
|
785 |
841 |
1.44e-22 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000112870
AA Change: W25L
PolyPhen 2
Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
|
| SMART Domains |
Protein: ENSMUSP00000108491
Gene: ENSMUSG00000034116
AA Change: W25L
| Domain | Start | End | E-Value | Type |
|---|
|
CH
|
3 |
115 |
5.69e-15 |
SMART |
|
RhoGEF
|
198 |
372 |
7.89e-62 |
SMART |
|
PH
|
403 |
506 |
8.45e-12 |
SMART |
|
C1
|
516 |
564 |
3.67e-9 |
SMART |
|
SH3
|
595 |
659 |
1.65e-8 |
SMART |
|
SH2
|
633 |
712 |
3.93e-2 |
SMART |
|
SH3
|
746 |
802 |
1.44e-22 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000169220
AA Change: W25L
PolyPhen 2
Score 0.013 (Sensitivity: 0.96; Specificity: 0.78)
|
| SMART Domains |
Protein: ENSMUSP00000126694
Gene: ENSMUSG00000034116
AA Change: W25L
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:CAMSAP_CH
|
27 |
79 |
6.2e-11 |
PFAM |
|
RhoGEF
|
174 |
348 |
7.89e-62 |
SMART |
|
PH
|
379 |
482 |
8.45e-12 |
SMART |
|
C1
|
492 |
540 |
3.67e-9 |
SMART |
|
SH3
|
571 |
635 |
1.65e-8 |
SMART |
|
SH2
|
645 |
727 |
8.88e-25 |
SMART |
|
SH3
|
761 |
817 |
1.44e-22 |
SMART |
|
| Meta Mutation Damage Score |
0.1054 |
| Coding Region Coverage |
- 1x: 99.4%
- 3x: 98.9%
- 10x: 97.4%
- 20x: 94.7%
|
| Validation Efficiency |
89% (34/38) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the VAV gene family. The VAV proteins are guanine nucleotide exchange factors (GEFs) for Rho family GTPases that activate pathways leading to actin cytoskeletal rearrangements and transcriptional alterations. The encoded protein is important in hematopoiesis, playing a role in T-cell and B-cell development and activation. The encoded protein has been identified as the specific binding partner of Nef proteins from HIV-1. Coexpression and binding of these partners initiates profound morphological changes, cytoskeletal rearrangements and the JNK/SAPK signaling cascade, leading to increased levels of viral transcription and replication. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Apr 2012]
PHENOTYPE: Homozygous null mutants exhibit defective T cell maturation, interleukin-2 production, and cell cycle progression. Immunoglobulin class switching is also impaired and attributed to defective T cell help. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 39 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4921517D22Rik |
GCC |
GC |
13: 59,839,412 (GRCm39) |
|
probably null |
Het |
| Abcf3 |
G |
A |
16: 20,369,398 (GRCm39) |
R260Q |
probably benign |
Het |
| Abcg3 |
A |
G |
5: 105,121,969 (GRCm39) |
V136A |
probably damaging |
Het |
| Acr |
C |
G |
15: 89,453,678 (GRCm39) |
H72Q |
probably damaging |
Het |
| Ambra1 |
A |
G |
2: 91,654,810 (GRCm39) |
N783S |
possibly damaging |
Het |
| Cd300ld2 |
A |
G |
11: 114,903,125 (GRCm39) |
F240S |
probably benign |
Het |
| Cep83 |
A |
G |
10: 94,584,915 (GRCm39) |
D340G |
possibly damaging |
Het |
| Crybg2 |
T |
A |
4: 133,800,049 (GRCm39) |
I403N |
probably damaging |
Het |
| Dnah14 |
T |
A |
1: 181,572,312 (GRCm39) |
M2881K |
possibly damaging |
Het |
| Erbb4 |
T |
C |
1: 68,081,621 (GRCm39) |
M1138V |
probably benign |
Het |
| Evi5 |
A |
G |
5: 107,969,575 (GRCm39) |
V112A |
probably benign |
Het |
| F2r |
A |
G |
13: 95,754,857 (GRCm39) |
V9A |
probably benign |
Het |
| Flot1 |
C |
A |
17: 36,141,900 (GRCm39) |
S337R |
probably benign |
Het |
| Glt28d2 |
G |
A |
3: 85,779,440 (GRCm39) |
T11I |
probably damaging |
Het |
| Gm19345 |
A |
G |
7: 19,588,901 (GRCm39) |
|
probably benign |
Het |
| Gm6605 |
C |
A |
7: 38,147,699 (GRCm39) |
|
noncoding transcript |
Het |
| Hmgcs2 |
A |
T |
3: 98,198,264 (GRCm39) |
I56F |
probably damaging |
Het |
| Ifna9 |
T |
A |
4: 88,510,508 (GRCm39) |
T39S |
possibly damaging |
Het |
| Il21 |
T |
G |
3: 37,281,923 (GRCm39) |
K74Q |
possibly damaging |
Het |
| Itpripl1 |
G |
T |
2: 126,983,011 (GRCm39) |
Y370* |
probably null |
Het |
| Kif24 |
G |
A |
4: 41,393,706 (GRCm39) |
P1056S |
probably damaging |
Het |
| L2hgdh |
A |
T |
12: 69,748,046 (GRCm39) |
|
probably benign |
Het |
| Lipo2 |
A |
T |
19: 33,724,298 (GRCm39) |
L156Q |
probably damaging |
Het |
| Nlrp4c |
T |
A |
7: 6,063,844 (GRCm39) |
M84K |
probably benign |
Het |
| Npy4r |
G |
A |
14: 33,868,640 (GRCm39) |
T216I |
probably benign |
Het |
| Or12d17 |
T |
C |
17: 37,777,238 (GRCm39) |
V47A |
probably benign |
Het |
| Or2h2c |
G |
C |
17: 37,422,347 (GRCm39) |
L176V |
probably benign |
Het |
| Or6c1 |
A |
T |
10: 129,518,106 (GRCm39) |
C167* |
probably null |
Het |
| Pafah1b2 |
T |
C |
9: 45,880,011 (GRCm39) |
E222G |
probably benign |
Het |
| Pop1 |
T |
A |
15: 34,510,115 (GRCm39) |
D406E |
possibly damaging |
Het |
| Proser1 |
A |
G |
3: 53,374,572 (GRCm39) |
Y32C |
probably damaging |
Het |
| Ptprj |
C |
A |
2: 90,266,913 (GRCm39) |
|
probably null |
Het |
| Slc1a3 |
T |
A |
15: 8,717,793 (GRCm39) |
I100F |
probably damaging |
Het |
| Slc25a22 |
T |
C |
7: 141,011,272 (GRCm39) |
D176G |
probably damaging |
Het |
| Stard7 |
T |
C |
2: 127,126,473 (GRCm39) |
V99A |
probably damaging |
Het |
| Stk33 |
C |
T |
7: 108,924,904 (GRCm39) |
V184I |
probably damaging |
Het |
| Timmdc1 |
A |
G |
16: 38,342,745 (GRCm39) |
L51P |
probably benign |
Het |
| Tppp |
T |
C |
13: 74,169,352 (GRCm39) |
S31P |
probably benign |
Het |
| Upf2 |
A |
T |
2: 5,993,240 (GRCm39) |
R599W |
unknown |
Het |
|
| Other mutations in Vav1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01071:Vav1
|
APN |
17 |
57,606,176 (GRCm39) |
missense |
probably benign |
0.21 |
|
IGL01613:Vav1
|
APN |
17 |
57,614,067 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
IGL02032:Vav1
|
APN |
17 |
57,604,090 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
IGL02213:Vav1
|
APN |
17 |
57,612,351 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
IGL03009:Vav1
|
APN |
17 |
57,603,582 (GRCm39) |
missense |
probably benign |
0.38 |
|
Belated
|
UTSW |
17 |
57,608,214 (GRCm39) |
missense |
probably benign |
0.06 |
|
Delayed
|
UTSW |
17 |
57,603,552 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Endlich
|
UTSW |
17 |
57,604,086 (GRCm39) |
missense |
probably damaging |
1.00 |
|
finally
|
UTSW |
17 |
57,618,860 (GRCm39) |
nonsense |
probably null |
|
|
Last
|
UTSW |
17 |
57,603,039 (GRCm39) |
missense |
probably damaging |
0.99 |
|
Late
|
UTSW |
17 |
57,608,870 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
Plain_sight
|
UTSW |
17 |
57,604,122 (GRCm39) |
missense |
probably damaging |
1.00 |
|
tardive
|
UTSW |
17 |
57,610,079 (GRCm39) |
nonsense |
probably null |
|
|
R0116:Vav1
|
UTSW |
17 |
57,603,039 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0125:Vav1
|
UTSW |
17 |
57,606,847 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0268:Vav1
|
UTSW |
17 |
57,603,090 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0344:Vav1
|
UTSW |
17 |
57,603,090 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0634:Vav1
|
UTSW |
17 |
57,610,862 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1313:Vav1
|
UTSW |
17 |
57,616,498 (GRCm39) |
splice site |
probably benign |
|
|
R1345:Vav1
|
UTSW |
17 |
57,608,214 (GRCm39) |
missense |
probably benign |
0.06 |
|
R1402:Vav1
|
UTSW |
17 |
57,610,849 (GRCm39) |
missense |
probably benign |
0.18 |
|
R1402:Vav1
|
UTSW |
17 |
57,610,849 (GRCm39) |
missense |
probably benign |
0.18 |
|
R1579:Vav1
|
UTSW |
17 |
57,604,252 (GRCm39) |
missense |
probably benign |
0.05 |
|
R1872:Vav1
|
UTSW |
17 |
57,631,750 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1971:Vav1
|
UTSW |
17 |
57,634,697 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2197:Vav1
|
UTSW |
17 |
57,610,140 (GRCm39) |
missense |
probably benign |
0.37 |
|
R2903:Vav1
|
UTSW |
17 |
57,613,187 (GRCm39) |
missense |
probably benign |
0.05 |
|
R4623:Vav1
|
UTSW |
17 |
57,606,839 (GRCm39) |
splice site |
probably null |
|
|
R4753:Vav1
|
UTSW |
17 |
57,613,140 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R4779:Vav1
|
UTSW |
17 |
57,603,552 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5232:Vav1
|
UTSW |
17 |
57,610,846 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R5240:Vav1
|
UTSW |
17 |
57,604,122 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5503:Vav1
|
UTSW |
17 |
57,610,079 (GRCm39) |
nonsense |
probably null |
|
|
R5592:Vav1
|
UTSW |
17 |
57,611,835 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5782:Vav1
|
UTSW |
17 |
57,603,001 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5945:Vav1
|
UTSW |
17 |
57,608,870 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R6113:Vav1
|
UTSW |
17 |
57,608,884 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6514:Vav1
|
UTSW |
17 |
57,634,660 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6575:Vav1
|
UTSW |
17 |
57,612,280 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R6932:Vav1
|
UTSW |
17 |
57,609,330 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R7024:Vav1
|
UTSW |
17 |
57,586,268 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7063:Vav1
|
UTSW |
17 |
57,618,860 (GRCm39) |
nonsense |
probably null |
|
|
R7322:Vav1
|
UTSW |
17 |
57,609,266 (GRCm39) |
missense |
probably benign |
|
|
R7335:Vav1
|
UTSW |
17 |
57,603,720 (GRCm39) |
missense |
probably benign |
|
|
R7474:Vav1
|
UTSW |
17 |
57,606,102 (GRCm39) |
missense |
probably benign |
0.07 |
|
R7665:Vav1
|
UTSW |
17 |
57,604,086 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8964:Vav1
|
UTSW |
17 |
57,606,122 (GRCm39) |
missense |
probably benign |
|
|
R8978:Vav1
|
UTSW |
17 |
57,631,650 (GRCm39) |
missense |
probably benign |
|
|
R8978:Vav1
|
UTSW |
17 |
57,603,710 (GRCm39) |
missense |
probably benign |
0.04 |
|
R9165:Vav1
|
UTSW |
17 |
57,618,895 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9453:Vav1
|
UTSW |
17 |
57,613,191 (GRCm39) |
missense |
probably benign |
|
|
R9728:Vav1
|
UTSW |
17 |
57,612,459 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1176:Vav1
|
UTSW |
17 |
57,610,853 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1177:Vav1
|
UTSW |
17 |
57,610,040 (GRCm39) |
missense |
probably benign |
0.18 |
|
| Predicted Primers |
PCR Primer
(F):5'- GACTTGACTCAGTGTTCAGTGGTCC -3'
(R):5'- AGCTGCAAGCCAACCAAGAGTG -3'
Sequencing Primer
(F):5'- ATAGTGGCACCTTAGTTCAGCAG -3'
(R):5'- TCTCCATAGCCAGAGCCG -3'
|
| Posted On |
2013-07-11 |
Incidental Mutation