Mutagenetix > Incidental Mutation

Incidental Mutation 'R7254:Prr29'

564151

Institutional Source

Beutler Lab

Gene Symbol

Prr29

Ensembl Gene

ENSMUSG00000009210

Gene Name

proline rich 29

Synonyms

2310007L24Rik

MMRRC Submission

045315-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7254 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

106256298-106268384 bp(+) (GRCm39)

Type of Mutation

start codon destroyed

DNA Base Change (assembly)

A to T at 106265684 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 1 (M1L)

Ref Sequence

ENSEMBL: ENSMUSP00000139960 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000001055] [ENSMUST00000009354] [ENSMUST00000106813] [ENSMUST00000106816] [ENSMUST00000185986] [ENSMUST00000188561] [ENSMUST00000190268] [ENSMUST00000190795]

AlphaFold

B1ARI9

Predicted Effect

probably benign
Transcript: ENSMUST00000001055

SMART Domains

Protein: ENSMUSP00000001055
Gene: ENSMUSG00000001029

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:ICAM_N	22	114	8.6e-45	PFAM
Blast:IG_like	119	215	2e-36	BLAST
transmembrane domain	224	246	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000009354

SMART Domains

Protein: ENSMUSP00000009354
Gene: ENSMUSG00000009210

Domain	Start	End	E-Value	Type
Pfam:DUF4587	1	60	9.4e-20	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000106813

SMART Domains

Protein: ENSMUSP00000102426
Gene: ENSMUSG00000001029

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:ICAM_N	22	114	2.8e-45	PFAM
Blast:IG_like	119	161	9e-11	BLAST

Predicted Effect

probably damaging
Transcript: ENSMUST00000106816
AA Change: M1L

PolyPhen 2 Score 0.970 (Sensitivity: 0.77; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000102429
Gene: ENSMUSG00000009210
AA Change: M1L

Domain	Start	End	E-Value	Type
Pfam:DUF4587	39	110	1.5e-23	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000173795

SMART Domains

Protein: ENSMUSP00000133315
Gene: ENSMUSG00000001029

Domain	Start	End	E-Value	Type
Pfam:ICAM_N	1	50	2.2e-21	PFAM
Blast:IG_like	55	151	2e-37	BLAST

Predicted Effect

probably damaging
Transcript: ENSMUST00000185986
AA Change: M1L

PolyPhen 2 Score 0.970 (Sensitivity: 0.77; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000140365
Gene: ENSMUSG00000009210
AA Change: M1L

Domain	Start	End	E-Value	Type
Pfam:DUF4587	32	103	1.5e-22	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000188561
AA Change: M1L

PolyPhen 2 Score 0.886 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000140194
Gene: ENSMUSG00000009210
AA Change: M1L

Domain	Start	End	E-Value	Type
Pfam:DUF4587	39	101	1.5e-18	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000190268
AA Change: M1L

PolyPhen 2 Score 0.970 (Sensitivity: 0.77; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000139960
Gene: ENSMUSG00000009210
AA Change: M1L

Domain	Start	End	E-Value	Type
Pfam:DUF4587	39	110	2.8e-22	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000190795

SMART Domains

Protein: ENSMUSP00000140541
Gene: ENSMUSG00000009210

Domain	Start	End	E-Value	Type
Pfam:DUF4587	1	60	9.4e-20	PFAM

Meta Mutation Damage Score

0.7546

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

98% (59/60)

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931406B18Rik	A	T	7: 43,147,623 (GRCm39)	D249E	probably damaging	Het
Acacb	A	C	5: 114,347,812 (GRCm39)		probably null	Het
Adnp	A	G	2: 168,025,918 (GRCm39)	V459A	probably damaging	Het
Arid3b	T	C	9: 57,704,037 (GRCm39)	K304E	probably damaging	Het
Ash1l	G	T	3: 88,977,816 (GRCm39)	R2713L	probably damaging	Het
Bmpr1a	A	C	14: 34,136,720 (GRCm39)	D490E	probably benign	Het
Cacna1g	A	T	11: 94,323,393 (GRCm39)	C1270*	probably null	Het
Cep295nl	G	T	11: 118,223,866 (GRCm39)	P326Q	probably damaging	Het
Cfap100	T	C	6: 90,383,043 (GRCm39)	I377V	unknown	Het
Creb1	C	T	1: 64,615,436 (GRCm39)	Q223*	probably null	Het
Ctsc	G	A	7: 87,958,767 (GRCm39)	G349D	probably damaging	Het
Ddx41	G	A	13: 55,681,769 (GRCm39)	R311*	probably null	Het
Dpcd	A	G	19: 45,565,473 (GRCm39)	Q149R	probably benign	Het
Dse	T	A	10: 34,060,144 (GRCm39)		probably benign	Het
Dync2i1	A	G	12: 116,226,205 (GRCm39)		probably benign	Het
Eef2k	C	T	7: 120,488,488 (GRCm39)	H458Y	probably benign	Het
Gipr	A	T	7: 18,897,538 (GRCm39)	V90E	probably damaging	Het
Gm14412	A	T	2: 177,009,189 (GRCm39)	D22E	probably damaging	Het
Gm21886	A	T	18: 80,132,950 (GRCm39)	C69*	probably null	Het
Gm5114	G	A	7: 39,058,390 (GRCm39)	L410F	probably benign	Het
Gmip	T	A	8: 70,269,118 (GRCm39)		probably null	Het
Gtf2f1	T	C	17: 57,314,101 (GRCm39)	T128A	possibly damaging	Het
Hnrnpr	A	G	4: 136,059,886 (GRCm39)	E330G	possibly damaging	Het
Hoxd9	T	A	2: 74,528,718 (GRCm39)	W107R	probably damaging	Het
Iars1	T	C	13: 49,876,554 (GRCm39)		probably null	Het
Idh2	TCCCAGGGCC	TCC	7: 79,748,079 (GRCm39)		probably null	Het
Ifi213	G	T	1: 173,421,529 (GRCm39)	P120Q	probably damaging	Het
Il6	A	T	5: 30,219,906 (GRCm39)	Q94L	probably benign	Het
Kcnab1	A	G	3: 65,226,908 (GRCm39)	S196G	probably benign	Het
Kcnv1	C	T	15: 44,976,604 (GRCm39)	V228I	probably benign	Het
Lars2	A	G	9: 123,284,028 (GRCm39)	T739A	possibly damaging	Het
Med13	T	C	11: 86,210,661 (GRCm39)	S494G	probably benign	Het
Mtrf1	GCCTTC	GC	14: 79,660,931 (GRCm39)		probably null	Het
Myh9	T	G	15: 77,650,024 (GRCm39)	Q1646P	probably damaging	Het
Nif3l1	T	A	1: 58,489,625 (GRCm39)	S171R	probably benign	Het
Or13n4	A	G	7: 106,422,777 (GRCm39)	*319Q	probably null	Het
Or1e1c	A	G	11: 73,266,201 (GRCm39)	I212V	probably benign	Het
Or1r1	A	G	11: 73,874,603 (GRCm39)	V277A	probably benign	Het
Or51f23	A	G	7: 102,452,765 (GRCm39)	T27A	probably benign	Het
Or5b113	A	T	19: 13,342,475 (GRCm39)	D161V	probably benign	Het
Or6c5b	T	C	10: 129,245,649 (GRCm39)	V138A	probably benign	Het
Or8c8	T	C	9: 38,164,719 (GRCm39)	M2T	probably benign	Het
Pak5	A	T	2: 135,958,684 (GRCm39)	S135T	possibly damaging	Het
Ptpn13	T	A	5: 103,742,502 (GRCm39)	V2407E	probably damaging	Het
Ralgapa1	T	A	12: 55,741,978 (GRCm39)	H1310L	probably damaging	Het
Raph1	T	C	1: 60,538,767 (GRCm39)	S393G	unknown	Het
Rgl2	T	C	17: 34,153,964 (GRCm39)	F457L	possibly damaging	Het
Ror2	A	G	13: 53,272,756 (GRCm39)	I303T	possibly damaging	Het
Runx2	G	A	17: 45,125,079 (GRCm39)	P80L	probably damaging	Het
Scn10a	C	T	9: 119,447,921 (GRCm39)	D1378N	probably damaging	Het
Serpinc1	T	A	1: 160,821,188 (GRCm39)	C91S	probably benign	Het
Sorbs1	G	C	19: 40,365,244 (GRCm39)	R180G	probably benign	Het
Spata31d1e	T	C	13: 59,889,790 (GRCm39)	I677V	probably benign	Het
Tada1	T	A	1: 166,216,217 (GRCm39)	C139*	probably null	Het
Tbr1	T	A	2: 61,636,386 (GRCm39)	V254E	probably damaging	Het
Timd4	A	T	11: 46,734,016 (GRCm39)	I340F	probably benign	Het
Tubb2a	T	C	13: 34,258,515 (GRCm39)	Y425C	probably damaging	Het
Zfp292	A	T	4: 34,819,476 (GRCm39)	M287K	probably damaging	Het

Other mutations in Prr29

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00850:Prr29	APN	11	106,266,033 (GRCm39)	missense	possibly damaging	0.93
Partisans	UTSW	11	106,267,085 (GRCm39)	missense	probably damaging	0.96
R0027:Prr29	UTSW	11	106,267,102 (GRCm39)	missense	possibly damaging	0.81
R0193:Prr29	UTSW	11	106,267,722 (GRCm39)	missense	probably damaging	1.00
R1707:Prr29	UTSW	11	106,267,509 (GRCm39)	missense	probably damaging	0.99
R1861:Prr29	UTSW	11	106,266,264 (GRCm39)	missense	probably damaging	1.00
R3125:Prr29	UTSW	11	106,265,711 (GRCm39)	missense	probably benign	0.00
R4664:Prr29	UTSW	11	106,267,159 (GRCm39)	missense	probably damaging	1.00
R4998:Prr29	UTSW	11	106,267,779 (GRCm39)	missense	probably benign	0.01
R6244:Prr29	UTSW	11	106,267,458 (GRCm39)	splice site	probably null
R6492:Prr29	UTSW	11	106,266,062 (GRCm39)	missense	probably damaging	1.00
R7069:Prr29	UTSW	11	106,267,085 (GRCm39)	missense	probably damaging	0.96
R7611:Prr29	UTSW	11	106,267,158 (GRCm39)	missense	probably damaging	1.00
R8023:Prr29	UTSW	11	106,267,099 (GRCm39)	missense	probably benign	0.45
R8039:Prr29	UTSW	11	106,267,738 (GRCm39)	missense	probably benign	0.10
Z1176:Prr29	UTSW	11	106,267,767 (GRCm39)	missense	possibly damaging	0.56

Predicted Primers

PCR Primer
(F):5'- TGAACAAAAGTGGGTCACCC -3'
(R):5'- AATGTCTCTGCACCTCATGACC -3'

Sequencing Primer
(F):5'- TCACCCAGGGTTAGCGC -3'
(R):5'- ACTCTCTTCCTCTTAGTTAGGGATC -3'

Posted On

2019-06-26