Incidental Mutation 'R7267:Zfp560'
ID 565003
Institutional Source Beutler Lab
Gene Symbol Zfp560
Ensembl Gene ENSMUSG00000045519
Gene Name zinc finger protein 560
Synonyms 2310030G09Rik
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7267 (G1)
Quality Score 225.009
Status Not validated
Chromosome 9
Chromosomal Location 20256432-20296473 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 20259384 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Histidine to Tyrosine at position 493 (H493Y)
Ref Sequence ENSEMBL: ENSMUSP00000065620 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000068079] [ENSMUST00000143992]
AlphaFold Q3URI6
Predicted Effect probably damaging
Transcript: ENSMUST00000068079
AA Change: H493Y

PolyPhen 2 Score 0.963 (Sensitivity: 0.78; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000065620
Gene: ENSMUSG00000045519
AA Change: H493Y

DomainStartEndE-ValueType
KRAB 41 101 3.22e-27 SMART
low complexity region 147 158 N/A INTRINSIC
ZnF_C2H2 279 301 4.01e-5 SMART
ZnF_C2H2 307 329 9.58e-3 SMART
ZnF_C2H2 335 357 5.5e-3 SMART
ZnF_C2H2 363 385 9.58e-3 SMART
ZnF_C2H2 391 413 3.74e-5 SMART
ZnF_C2H2 419 441 2.43e-4 SMART
ZnF_C2H2 447 469 1.28e-3 SMART
ZnF_C2H2 475 497 1.06e-4 SMART
ZnF_C2H2 503 525 3.11e-2 SMART
ZnF_C2H2 531 553 8.47e-4 SMART
ZnF_C2H2 559 581 2.99e-4 SMART
ZnF_C2H2 587 609 4.24e-4 SMART
ZnF_C2H2 615 637 3.44e-4 SMART
ZnF_C2H2 643 665 1.26e-2 SMART
ZnF_C2H2 671 693 1.69e-3 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000143992
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.5%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 73 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcb5 A G 12: 118,916,205 (GRCm39) I37T probably damaging Het
Ackr2 A G 9: 121,737,874 (GRCm39) Y83C probably damaging Het
Adam19 C T 11: 46,012,403 (GRCm39) Q300* probably null Het
Anxa7 C T 14: 20,519,474 (GRCm39) A115T probably benign Het
Aoc1l3 AGGCCCAGCCTGATCCTAAATTTCCTATCCCCATCAGCAAAGGTGGCCCTCAAGTGGCCCAGCC AGGCCCAGCC 6: 48,964,952 (GRCm39) probably benign Het
Atad2b A T 12: 5,077,105 (GRCm39) R1109* probably null Het
Batf2 A G 19: 6,221,396 (GRCm39) T69A probably benign Het
Best1 A G 19: 9,964,177 (GRCm39) C428R probably benign Het
Birc6 A G 17: 74,892,980 (GRCm39) T973A probably benign Het
Bmp2k C T 5: 97,216,293 (GRCm39) T597I unknown Het
Bmpr1a G A 14: 34,165,836 (GRCm39) P57L possibly damaging Het
Camk2d A T 3: 126,591,379 (GRCm39) H283L possibly damaging Het
Cd86 CA CAA 16: 36,426,917 (GRCm39) probably null Het
Ces1b C A 8: 93,806,132 (GRCm39) K36N possibly damaging Het
Ces2a T A 8: 105,465,672 (GRCm39) M308K probably benign Het
Ctnnd2 C A 15: 30,683,501 (GRCm39) Q501K probably benign Het
Cyb561d1 T C 3: 108,106,629 (GRCm39) T197A probably benign Het
Dedd2 C A 7: 24,918,391 (GRCm39) A55S probably damaging Het
Dnah2 C T 11: 69,391,643 (GRCm39) R684Q probably damaging Het
Elovl3 A G 19: 46,122,979 (GRCm39) Y185C probably damaging Het
Fgf3 C T 7: 144,392,569 (GRCm39) A42V probably damaging Het
Gabra5 A G 7: 57,140,529 (GRCm39) L56P probably damaging Het
Gm19410 T G 8: 36,281,997 (GRCm39) V1860G possibly damaging Het
Gm21663 G T 5: 26,143,751 (GRCm39) N190K probably damaging Het
Grm3 T A 5: 9,639,581 (GRCm39) I155L probably benign Het
Hadha A G 5: 30,327,755 (GRCm39) I495T probably damaging Het
Herc4 C T 10: 63,109,365 (GRCm39) A200V possibly damaging Het
Itga3 C A 11: 94,967,188 (GRCm39) probably benign Het
Krt6a C T 15: 101,602,289 (GRCm39) S132N probably benign Het
Lpar1 T C 4: 58,486,857 (GRCm39) N138S possibly damaging Het
Lrrc42 T A 4: 107,096,983 (GRCm39) T247S probably damaging Het
Man2b1 T A 8: 85,813,804 (GRCm39) V256E probably damaging Het
Map3k4 G T 17: 12,490,536 (GRCm39) Y298* probably null Het
Mars1 A G 10: 127,144,455 (GRCm39) V195A probably benign Het
Mdm4 A T 1: 132,922,311 (GRCm39) V278E probably benign Het
Mdp1 A G 14: 55,897,544 (GRCm39) V37A probably damaging Het
Med13 A G 11: 86,199,652 (GRCm39) I685T probably benign Het
Mobp A G 9: 119,996,914 (GRCm39) N15S probably damaging Het
Nbn T A 4: 15,979,320 (GRCm39) M435K probably benign Het
Nfs1 A G 2: 155,965,703 (GRCm39) V126A probably benign Het
Npepl1 T A 2: 173,963,909 (GRCm39) V480E probably damaging Het
Nr2e3 G A 9: 59,855,972 (GRCm39) S155F possibly damaging Het
Oplah T C 15: 76,189,209 (GRCm39) D278G probably benign Het
Or4c124 A T 2: 89,156,157 (GRCm39) Y122* probably null Het
Or51q1c A G 7: 103,653,046 (GRCm39) H188R probably benign Het
Pard3 T C 8: 128,098,056 (GRCm39) Y366H probably damaging Het
Pcdhb11 A G 18: 37,555,006 (GRCm39) N112S possibly damaging Het
Pde11a A G 2: 76,168,189 (GRCm39) S255P probably damaging Het
Piezo1 T C 8: 123,224,268 (GRCm39) H745R Het
Pkn2 A T 3: 142,517,776 (GRCm39) S441T possibly damaging Het
Pld1 A C 3: 28,130,550 (GRCm39) H450P probably damaging Het
Plekhs1 T A 19: 56,459,209 (GRCm39) H22Q probably damaging Het
Prss44 A C 9: 110,645,611 (GRCm39) Y285S probably damaging Het
Qpctl T C 7: 18,878,852 (GRCm39) E249G probably benign Het
Rcsd1 A T 1: 165,491,185 (GRCm39) S50T probably damaging Het
Runx2 G A 17: 45,125,079 (GRCm39) P80L probably damaging Het
Scube1 T A 15: 83,505,266 (GRCm39) N496Y probably damaging Het
Skic3 A G 13: 76,328,196 (GRCm39) M1415V probably benign Het
Slc16a8 AGGCC A 15: 79,136,125 (GRCm39) probably null Het
Slc38a4 T A 15: 96,903,781 (GRCm39) T407S probably benign Het
Slc51a T G 16: 32,298,590 (GRCm39) I56L probably benign Het
Slc6a18 T G 13: 73,819,755 (GRCm39) I272L probably damaging Het
Sorl1 A G 9: 42,035,375 (GRCm39) L12P possibly damaging Het
Sycp2l A T 13: 41,300,070 (GRCm39) D428V possibly damaging Het
Syne1 C T 10: 5,178,218 (GRCm39) R4752Q probably damaging Het
Tbc1d9 C A 8: 83,997,957 (GRCm39) H1171Q probably damaging Het
Thsd1 G A 8: 22,733,597 (GRCm39) V215I probably benign Het
Tmem143 T A 7: 45,557,598 (GRCm39) M208K probably benign Het
Tmem63b C T 17: 45,977,048 (GRCm39) V440I probably benign Het
Tnik A T 3: 28,700,776 (GRCm39) S918C probably damaging Het
Ttn A G 2: 76,733,751 (GRCm39) I4508T unknown Het
Vav2 A G 2: 27,173,334 (GRCm39) F497L probably damaging Het
Zc3h14 G A 12: 98,751,988 (GRCm39) R730Q probably damaging Het
Other mutations in Zfp560
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00933:Zfp560 APN 9 20,260,104 (GRCm39) missense probably benign 0.00
IGL02400:Zfp560 APN 9 20,261,896 (GRCm39) missense possibly damaging 0.73
R0002:Zfp560 UTSW 9 20,258,813 (GRCm39) missense probably damaging 1.00
R0004:Zfp560 UTSW 9 20,259,263 (GRCm39) missense probably damaging 1.00
R0019:Zfp560 UTSW 9 20,259,656 (GRCm39) missense probably benign 0.23
R1401:Zfp560 UTSW 9 20,263,149 (GRCm39) missense possibly damaging 0.71
R1481:Zfp560 UTSW 9 20,260,086 (GRCm39) missense probably benign
R1521:Zfp560 UTSW 9 20,260,071 (GRCm39) splice site probably null
R1569:Zfp560 UTSW 9 20,260,011 (GRCm39) missense possibly damaging 0.83
R1579:Zfp560 UTSW 9 20,259,287 (GRCm39) missense possibly damaging 0.73
R1673:Zfp560 UTSW 9 20,258,949 (GRCm39) missense probably benign 0.37
R1694:Zfp560 UTSW 9 20,259,282 (GRCm39) nonsense probably null
R1796:Zfp560 UTSW 9 20,263,226 (GRCm39) missense possibly damaging 0.71
R2971:Zfp560 UTSW 9 20,260,240 (GRCm39) missense probably benign 0.00
R3416:Zfp560 UTSW 9 20,258,974 (GRCm39) nonsense probably null
R4182:Zfp560 UTSW 9 20,258,744 (GRCm39) missense probably benign 0.11
R4509:Zfp560 UTSW 9 20,260,019 (GRCm39) missense probably damaging 1.00
R4708:Zfp560 UTSW 9 20,263,214 (GRCm39) missense possibly damaging 0.85
R4735:Zfp560 UTSW 9 20,260,347 (GRCm39) missense probably benign 0.01
R4937:Zfp560 UTSW 9 20,259,263 (GRCm39) missense probably damaging 1.00
R5562:Zfp560 UTSW 9 20,261,883 (GRCm39) nonsense probably null
R6597:Zfp560 UTSW 9 20,259,297 (GRCm39) missense probably benign 0.00
R6852:Zfp560 UTSW 9 20,259,339 (GRCm39) missense probably damaging 0.99
R6863:Zfp560 UTSW 9 20,259,795 (GRCm39) missense probably damaging 0.99
R7619:Zfp560 UTSW 9 20,260,206 (GRCm39) missense probably benign 0.01
R7763:Zfp560 UTSW 9 20,258,619 (GRCm39) missense possibly damaging 0.96
R8220:Zfp560 UTSW 9 20,260,348 (GRCm39) missense probably benign 0.00
R8356:Zfp560 UTSW 9 20,260,231 (GRCm39) missense probably benign 0.25
R8858:Zfp560 UTSW 9 20,260,403 (GRCm39) missense probably benign 0.12
R8992:Zfp560 UTSW 9 20,260,895 (GRCm39) missense probably benign
Z1176:Zfp560 UTSW 9 20,259,000 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- GGCTATTCCATCACTTTTACAAGTGTA -3'
(R):5'- CCTTATTACACATTTGAGAACACACA -3'

Sequencing Primer
(F):5'- AGCGCACAGTGAATGCTTTC -3'
(R):5'- ACACTGGAGAGAAGCCCTTCG -3'
Posted On 2019-06-26