Mutagenetix > Incidental Mutation

Incidental Mutation 'R7318:Usp17lb'

565653

Institutional Source

Beutler Lab

Gene Symbol

Usp17lb

Ensembl Gene

ENSMUSG00000062369

Gene Name

ubiquitin specific peptidase 17-like B

Synonyms

Dub1a

MMRRC Submission

045414-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.123) question?

Stock #

R7318 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

104489464-104491790 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 104490340 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Valine at position 196 (I196V)

Ref Sequence

ENSEMBL: ENSMUSP00000075822 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000076501] [ENSMUST00000106814]

AlphaFold

E9Q9U0

Predicted Effect

probably benign
Transcript: ENSMUST00000076501
AA Change: I196V

PolyPhen 2 Score 0.030 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000075822
Gene: ENSMUSG00000062369
AA Change: I196V

Domain	Start	End	E-Value	Type
Pfam:UCH	50	345	3.2e-55	PFAM
Pfam:UCH_1	51	327	6.8e-26	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000106814
AA Change: I195V

PolyPhen 2 Score 0.024 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000102427
Gene: ENSMUSG00000062369
AA Change: I195V

Domain	Start	End	E-Value	Type
Pfam:UCH	49	344	2.3e-61	PFAM
Pfam:UCH_1	50	326	1.5e-30	PFAM

Meta Mutation Damage Score

0.1676

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

100% (67/67)

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930433I11Rik	T	C	7: 40,643,111 (GRCm39)	L260S	probably benign	Het
9130230L23Rik	A	T	5: 66,145,771 (GRCm39)	S113R	unknown	Het
Abcc5	G	A	16: 20,211,293 (GRCm39)	P557S	probably benign	Het
Acad11	A	G	9: 103,958,466 (GRCm39)	T245A	probably damaging	Het
Acap2	A	G	16: 30,946,155 (GRCm39)	F263L	probably damaging	Het
Ankle2	A	T	5: 110,385,632 (GRCm39)	N327I	probably benign	Het
Appl1	T	C	14: 26,685,617 (GRCm39)	E67G	probably benign	Het
Arfgef3	A	T	10: 18,506,211 (GRCm39)	C864S	possibly damaging	Het
Arhgap20	A	G	9: 51,751,802 (GRCm39)	I418V	probably benign	Het
Arhgef2	A	T	3: 88,539,610 (GRCm39)	N102Y	probably damaging	Het
Car9	G	T	4: 43,513,089 (GRCm39)	E431D	probably damaging	Het
Cbfa2t2	T	C	2: 154,342,374 (GRCm39)	I30T	probably benign	Het
Cd40	A	T	2: 164,904,255 (GRCm39)	D34V	possibly damaging	Het
Chrnb2	T	A	3: 89,670,674 (GRCm39)		probably null	Het
Chsy1	T	G	7: 65,759,977 (GRCm39)		probably null	Het
Cpne6	A	G	14: 55,751,751 (GRCm39)	T245A	possibly damaging	Het
Cpsf1	T	A	15: 76,481,475 (GRCm39)	K1159*	probably null	Het
Crisp1	T	A	17: 40,618,668 (GRCm39)	E64D	possibly damaging	Het
D3Ertd751e	A	G	3: 41,756,986 (GRCm39)		probably null	Het
Dennd11	A	G	6: 40,386,098 (GRCm39)	V333A	possibly damaging	Het
Dnah7b	T	A	1: 46,234,532 (GRCm39)	L1488Q	probably damaging	Het
Dnm2	G	A	9: 21,416,863 (GRCm39)	G799R	possibly damaging	Het
Elp2	G	A	18: 24,739,956 (GRCm39)	V61I	probably damaging	Het
Epb41l3	T	C	17: 69,573,135 (GRCm39)	L388P		Het
Fry	A	T	5: 150,360,458 (GRCm39)	S2035C	probably damaging	Het
Gas8	T	C	8: 124,257,707 (GRCm39)	F385L	probably benign	Het
Ghsr	T	C	3: 27,426,616 (GRCm39)	V224A	possibly damaging	Het
Gstp2	T	A	19: 4,091,065 (GRCm39)	R85W	probably benign	Het
Ighv1-20	T	A	12: 114,687,810 (GRCm39)	I6F	possibly damaging	Het
Inpp4b	T	A	8: 82,798,374 (GRCm39)	M854K	probably damaging	Het
Kif15	A	G	9: 122,817,014 (GRCm39)	E538G	probably damaging	Het
Large2	T	C	2: 92,196,373 (GRCm39)	T485A	probably benign	Het
Lmo3	T	A	6: 138,398,363 (GRCm39)		probably benign	Het
Lyg1	G	A	1: 37,988,936 (GRCm39)	P95S	probably benign	Het
Lyst	A	G	13: 13,932,028 (GRCm39)	H3552R	probably benign	Het
Mtif2	C	T	11: 29,490,115 (GRCm39)	S385L	probably benign	Het
Muc4	A	T	16: 32,575,710 (GRCm39)	I1737F	unknown	Het
Mug1	T	C	6: 121,847,611 (GRCm39)		probably null	Het
Mx1	G	T	16: 97,253,286 (GRCm39)	Q350K	probably benign	Het
Mylk3	G	T	8: 86,085,726 (GRCm39)	D269E	probably benign	Het
Myo3a	A	T	2: 22,448,332 (GRCm39)	K974*	probably null	Het
Nectin4	G	T	1: 171,208,031 (GRCm39)	R141L	probably benign	Het
Nlgn2	T	C	11: 69,716,795 (GRCm39)	H582R	probably damaging	Het
Or51ab3	T	A	7: 103,201,298 (GRCm39)	M102K	probably damaging	Het
Or51e1	T	A	7: 102,359,226 (GRCm39)	Y253*	probably null	Het
Pi16	C	A	17: 29,538,208 (GRCm39)	P7Q	possibly damaging	Het
Psmd11	C	A	11: 80,347,128 (GRCm39)	L171I	probably benign	Het
Rad54l	A	G	4: 115,967,906 (GRCm39)	V152A	possibly damaging	Het
Ranbp2	T	A	10: 58,318,909 (GRCm39)	Y2473*	probably null	Het
Sertad1	T	C	7: 27,188,910 (GRCm39)	I77T	possibly damaging	Het
Sesn3	A	T	9: 14,219,873 (GRCm39)	E87D	probably damaging	Het
Slc30a5	A	T	13: 100,950,477 (GRCm39)	S260R	probably benign	Het
Slc6a12	G	A	6: 121,328,972 (GRCm39)	G111S	probably damaging	Het
Slc6a12	T	C	6: 121,328,978 (GRCm39)	Y113H	probably benign	Het
Spag17	T	G	3: 99,847,299 (GRCm39)	M76R	probably benign	Het
Spata31f3	TCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGTCATTCAACACTTTGG	TCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGTCATTCAACACTTTGG	4: 42,871,823 (GRCm39)		probably benign	Het
Stard13	G	A	5: 150,986,038 (GRCm39)	Q491*	probably null	Het
Synpo2	T	C	3: 122,910,968 (GRCm39)	S226G	probably benign	Het
Tada2b	G	A	5: 36,641,331 (GRCm39)	T24I	probably benign	Het
Tafa1	T	C	6: 96,092,737 (GRCm39)		probably null	Het
Tmem51	TCCCC	TCCC	4: 141,764,996 (GRCm39)		probably null	Het
Tnnt1	T	A	7: 4,513,547 (GRCm39)		probably null	Het
Utp20	T	A	10: 88,649,811 (GRCm39)	K466N	possibly damaging	Het
Wdr46	T	C	17: 34,160,859 (GRCm39)		probably null	Het
Zfp287	T	A	11: 62,605,104 (GRCm39)	Q601L	probably damaging	Het
Zfp410	T	C	12: 84,372,464 (GRCm39)	S97P	probably benign	Het

Other mutations in Usp17lb

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01559:Usp17lb	APN	7	104,490,436 (GRCm39)	missense	probably damaging	0.98
IGL01571:Usp17lb	APN	7	104,489,588 (GRCm39)	missense	possibly damaging	0.59
IGL01624:Usp17lb	APN	7	104,491,720 (GRCm39)	utr 5 prime	probably benign
IGL02582:Usp17lb	APN	7	104,489,937 (GRCm39)	missense	probably damaging	1.00
IGL03193:Usp17lb	APN	7	104,490,484 (GRCm39)	missense	possibly damaging	0.46
R0399:Usp17lb	UTSW	7	104,490,358 (GRCm39)	missense	possibly damaging	0.81
R0420:Usp17lb	UTSW	7	104,489,746 (GRCm39)	missense	probably benign
R1202:Usp17lb	UTSW	7	104,491,695 (GRCm39)	missense	probably damaging	0.98
R1628:Usp17lb	UTSW	7	104,490,048 (GRCm39)	missense	probably damaging	1.00
R2085:Usp17lb	UTSW	7	104,489,622 (GRCm39)	missense	possibly damaging	0.73
R2214:Usp17lb	UTSW	7	104,490,639 (GRCm39)	missense	probably benign	0.36
R2283:Usp17lb	UTSW	7	104,489,859 (GRCm39)	missense	possibly damaging	0.68
R2866:Usp17lb	UTSW	7	104,489,955 (GRCm39)	missense	probably damaging	1.00
R3433:Usp17lb	UTSW	7	104,490,855 (GRCm39)	missense	possibly damaging	0.89
R5004:Usp17lb	UTSW	7	104,490,884 (GRCm39)	missense	probably benign	0.00
R5090:Usp17lb	UTSW	7	104,490,290 (GRCm39)	missense	probably benign	0.06
R5143:Usp17lb	UTSW	7	104,490,685 (GRCm39)	missense	probably damaging	1.00
R5366:Usp17lb	UTSW	7	104,489,615 (GRCm39)	missense	possibly damaging	0.95
R5568:Usp17lb	UTSW	7	104,490,415 (GRCm39)	missense	probably damaging	1.00
R5605:Usp17lb	UTSW	7	104,489,847 (GRCm39)	missense	probably benign	0.00
R5647:Usp17lb	UTSW	7	104,489,881 (GRCm39)	missense	possibly damaging	0.92
R5981:Usp17lb	UTSW	7	104,490,394 (GRCm39)	missense	probably damaging	1.00
R5999:Usp17lb	UTSW	7	104,489,552 (GRCm39)	missense	probably damaging	0.99
R6114:Usp17lb	UTSW	7	104,489,571 (GRCm39)	missense	possibly damaging	0.87
R6185:Usp17lb	UTSW	7	104,490,631 (GRCm39)	missense	probably benign	0.22
R6279:Usp17lb	UTSW	7	104,489,898 (GRCm39)	missense	probably damaging	1.00
R6300:Usp17lb	UTSW	7	104,489,898 (GRCm39)	missense	probably damaging	1.00
R6891:Usp17lb	UTSW	7	104,490,307 (GRCm39)	missense	probably benign	0.02
R7000:Usp17lb	UTSW	7	104,490,492 (GRCm39)	missense	probably damaging	1.00
R7137:Usp17lb	UTSW	7	104,490,798 (GRCm39)	missense	probably benign	0.15
R7372:Usp17lb	UTSW	7	104,490,913 (GRCm39)	splice site	probably null
R7809:Usp17lb	UTSW	7	104,490,420 (GRCm39)	missense	probably damaging	1.00
R7834:Usp17lb	UTSW	7	104,490,718 (GRCm39)	missense	probably damaging	1.00
R8008:Usp17lb	UTSW	7	104,490,481 (GRCm39)	missense	possibly damaging	0.82
R8283:Usp17lb	UTSW	7	104,490,013 (GRCm39)	missense	probably damaging	0.98
R8385:Usp17lb	UTSW	7	104,489,830 (GRCm39)	missense	possibly damaging	0.82
R8942:Usp17lb	UTSW	7	104,490,583 (GRCm39)	missense	possibly damaging	0.49
R8996:Usp17lb	UTSW	7	104,490,889 (GRCm39)	missense	probably benign	0.17
R9598:Usp17lb	UTSW	7	104,489,718 (GRCm39)	missense	probably benign	0.07
R9697:Usp17lb	UTSW	7	104,490,495 (GRCm39)	missense	possibly damaging	0.69
X0021:Usp17lb	UTSW	7	104,490,523 (GRCm39)	missense	probably damaging	1.00
Z1088:Usp17lb	UTSW	7	104,490,336 (GRCm39)	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- ACACTAGCATGAGTACCTTTGGG -3'
(R):5'- TCCCAGAATTTGACCTCTGC -3'

Sequencing Primer
(F):5'- GTACCTTTGGGGCACTATAAAGC -3'
(R):5'- CAGGAAGATGCCCATGAGTTTCTC -3'

Posted On

2019-06-26