Mutagenetix > Incidental Mutation

Incidental Mutation 'R7283:Nlrp4f'

565823

Institutional Source

Beutler Lab

Gene Symbol

Nlrp4f

Ensembl Gene

ENSMUSG00000032999

Gene Name

NLR family, pyrin domain containing 4F

Synonyms

Nalp-kappa, Nalp4f, C330026N02Rik

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.062) question?

Stock #

R7283 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

65177111-65205977 bp(-) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to A at 65195538 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 76 (R76*)

Ref Sequence

ENSEMBL: ENSMUSP00000152824 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000037372] [ENSMUST00000221659] [ENSMUST00000222273] [ENSMUST00000222514] [ENSMUST00000222559] [ENSMUST00000223418]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000037372
AA Change: R98*

SMART Domains

Protein: ENSMUSP00000041908
Gene: ENSMUSG00000032999
AA Change: R98*

Domain	Start	End	E-Value	Type
PYRIN	6	88	1.44e-26	SMART
Pfam:NACHT	147	316	3.4e-39	PFAM
LRR	632	659	1.18e1	SMART
LRR	686	713	4.22e1	SMART
LRR	715	742	5.66e1	SMART
LRR	743	769	4.03e0	SMART
LRR	771	798	1.17e0	SMART
LRR	799	826	1.43e-1	SMART
LRR	828	855	1.03e-2	SMART
LRR	856	883	5.59e-4	SMART
LRR	885	912	2.91e0	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000221659
AA Change: R98*

Predicted Effect

probably benign
Transcript: ENSMUST00000222273

Predicted Effect

probably null
Transcript: ENSMUST00000222514
AA Change: R98*

Predicted Effect

probably null
Transcript: ENSMUST00000222559
AA Change: R76*

Predicted Effect

probably null
Transcript: ENSMUST00000223418
AA Change: R98*

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.5%

Validation Efficiency

100% (72/72)

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610507B11Rik	A	G	11: 78,274,828	Q1346R	probably damaging	Het
4833439L19Rik	A	G	13: 54,552,691	V278A	probably benign	Het
4932415D10Rik	G	A	10: 82,291,297	R1960W	possibly damaging	Het
Abcc3	C	T	11: 94,357,047	A1207T	probably benign	Het
Abce1	C	A	8: 79,685,256	G592*	probably null	Het
Acad10	A	C	5: 121,649,475	V137G	possibly damaging	Het
Adcy3	A	G	12: 4,203,563	I672V	not run	Het
Adgrb1	A	T	15: 74,580,663	Q1166L	possibly damaging	Het
Ankrd44	A	T	1: 54,729,796	N465K	probably damaging	Het
Avpr1b	A	G	1: 131,609,731	T418A	probably benign	Het
Azin1	G	A	15: 38,501,408	T33I	probably damaging	Het
Bicra	T	C	7: 15,972,500	T1339A	probably damaging	Het
Cacna1s	A	G	1: 136,073,708	Y299C	probably damaging	Het
Clip1	A	C	5: 123,613,794	C641W		Het
Clip3	T	C	7: 30,305,812	S524P	probably damaging	Het
Cnpy4	A	T	5: 138,192,882	H240L	probably benign	Het
Cyp2b19	T	C	7: 26,766,914	Y381H	probably damaging	Het
Cyp3a13	T	A	5: 137,905,556	N280I	probably benign	Het
Diaph3	A	G	14: 86,866,584	F788S	probably damaging	Het
Drc7	A	G	8: 95,071,579	N484S	probably damaging	Het
Erap1	G	A	13: 74,673,784		probably null	Het
Fat4	A	T	3: 38,889,693	I912F	probably damaging	Het
Hsd3b3	T	A	3: 98,742,357	K217*	probably null	Het
Igkv12-89	A	G	6: 68,835,077	V36A	probably damaging	Het
Invs	T	A	4: 48,392,526		probably null	Het
Ipo8	T	A	6: 148,824,481	Y30F	possibly damaging	Het
Kctd14	T	C	7: 97,451,486	M1T	probably null	Het
Klrb1c	A	T	6: 128,784,257	C136S	probably benign	Het
Morn2	A	G	17: 80,297,259	E48G	probably damaging	Het
Myh1	A	T	11: 67,201,844		probably null	Het
Nbeal1	G	C	1: 60,237,151	V684L	probably benign	Het
Nfxl1	A	G	5: 72,529,050	S603P	probably benign	Het
Nlrc3	G	A	16: 3,947,877	A351V	probably benign	Het
Olfr190	A	T	16: 59,074,192	M296K	probably benign	Het
Olfr228	A	T	2: 86,483,139	I201N	probably damaging	Het
Olfr397	T	C	11: 73,964,808	S67P	probably damaging	Het
Olfr664	G	T	7: 104,733,593	T257K	probably damaging	Het
Olfr872	A	C	9: 20,260,259	I140L	probably damaging	Het
Papolg	A	G	11: 23,867,394	V601A	not run	Het
Pde4dip	T	C	3: 97,758,882	T349A	probably benign	Het
Pdlim5	T	C	3: 142,311,980		probably null	Het
Pkhd1l1	A	G	15: 44,503,280	N718S	probably benign	Het
Plcxd3	A	G	15: 4,516,919	H135R	probably damaging	Het
Plxna2	A	T	1: 194,644,883	Y375F	probably damaging	Het
Prkca	C	T	11: 108,340,645		probably null	Het
Prkdc	A	G	16: 15,717,764	S1663G	probably benign	Het
Ptbp3	T	C	4: 59,514,384	T80A	probably benign	Het
Ptpn4	C	T	1: 119,682,531	V696I	possibly damaging	Het
Pygl	A	T	12: 70,216,568	W175R	possibly damaging	Het
Rftn1	A	G	17: 50,047,441	Y298H	probably damaging	Het
Rit2	A	G	18: 31,316,839		probably null	Het
Runx1t1	G	A	4: 13,846,935	G240R	probably damaging	Het
Scn10a	A	G	9: 119,664,779		probably null	Het
Serpina16	A	C	12: 103,672,432		probably null	Het
Slc17a3	A	T	13: 23,855,848	M290L		Het
Slc6a4	A	T	11: 77,010,696	M86L	probably benign	Het
Spag7	A	T	11: 70,665,313	V46E	probably benign	Het
Sptlc1	T	C	13: 53,344,878	I271V	probably benign	Het
Stk17b	A	C	1: 53,757,515	H364Q	probably benign	Het
Strc	T	C	2: 121,379,452	H130R	probably damaging	Het
Stxbp1	T	A	2: 32,815,014	D148V	probably damaging	Het
Tirap	G	A	9: 35,188,929	P153L	probably damaging	Het
Tmco3	G	A	8: 13,319,605		probably null	Het
Tmem51	T	A	4: 142,031,783	D218V	probably damaging	Het
Trim40	A	T	17: 36,882,662	D218E	probably benign	Het
Ttc21b	T	C	2: 66,208,718	D934G	probably damaging	Het
Vmn2r26	T	C	6: 124,025,955	L108P	probably damaging	Het
Washc2	C	A	6: 116,227,418	P429Q	probably damaging	Het
Wipi1	A	G	11: 109,611,311	M1T	probably null	Het
Zfp438	A	G	18: 5,214,712	V82A	probably damaging	Het
Zfp853	G	C	5: 143,287,738	A724G	unknown	Het

Other mutations in Nlrp4f

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01608:Nlrp4f	APN	13	65195543	nonsense	probably null
IGL01676:Nlrp4f	APN	13	65195119	missense	possibly damaging	0.95
IGL01701:Nlrp4f	APN	13	65199409	missense	probably damaging	1.00
IGL01799:Nlrp4f	APN	13	65187462	missense	probably benign	0.03
IGL02084:Nlrp4f	APN	13	65194171	nonsense	probably null
IGL02234:Nlrp4f	APN	13	65194488	missense	probably damaging	1.00
IGL02481:Nlrp4f	APN	13	65194734	missense	probably benign	0.04
IGL02483:Nlrp4f	APN	13	65194734	missense	probably benign	0.04
IGL02625:Nlrp4f	APN	13	65199271	missense	probably damaging	1.00
IGL02814:Nlrp4f	APN	13	65185042	missense	probably damaging	0.98
IGL03077:Nlrp4f	APN	13	65194598	missense	probably benign	0.10
IGL03111:Nlrp4f	APN	13	65183002	missense	probably damaging	1.00
IGL03175:Nlrp4f	APN	13	65194596	missense	probably damaging	1.00
IGL03324:Nlrp4f	APN	13	65195228	missense	possibly damaging	0.91
R0398:Nlrp4f	UTSW	13	65194918	missense	possibly damaging	0.79
R0477:Nlrp4f	UTSW	13	65190906	missense	probably benign	0.01
R0707:Nlrp4f	UTSW	13	65194503	missense	probably benign	0.42
R1052:Nlrp4f	UTSW	13	65185083	missense	possibly damaging	0.73
R1302:Nlrp4f	UTSW	13	65194557	missense	possibly damaging	0.77
R1460:Nlrp4f	UTSW	13	65190268	missense	probably benign	0.23
R1970:Nlrp4f	UTSW	13	65194091	missense	probably damaging	1.00
R2111:Nlrp4f	UTSW	13	65199353	missense	probably benign	0.11
R2272:Nlrp4f	UTSW	13	65194408	missense	probably benign	0.01
R2370:Nlrp4f	UTSW	13	65190846	missense	probably damaging	0.99
R2680:Nlrp4f	UTSW	13	65194343	nonsense	probably null
R3120:Nlrp4f	UTSW	13	65194716	missense	probably benign	0.13
R3737:Nlrp4f	UTSW	13	65194007	missense	probably benign	0.01
R4035:Nlrp4f	UTSW	13	65194007	missense	probably benign	0.01
R4107:Nlrp4f	UTSW	13	65183065	missense	probably benign	0.01
R4422:Nlrp4f	UTSW	13	65184962	critical splice donor site	probably null
R4718:Nlrp4f	UTSW	13	65194989	missense	probably benign	0.01
R5652:Nlrp4f	UTSW	13	65182989	missense	probably benign	0.00
R5656:Nlrp4f	UTSW	13	65190871	nonsense	probably null
R5912:Nlrp4f	UTSW	13	65194908	missense	probably damaging	0.99
R5915:Nlrp4f	UTSW	13	65187555	missense	probably damaging	1.00
R5955:Nlrp4f	UTSW	13	65195081	missense	probably benign	0.15
R6683:Nlrp4f	UTSW	13	65199195	missense	probably benign	0.01
R6742:Nlrp4f	UTSW	13	65187440	critical splice donor site	probably null
R6750:Nlrp4f	UTSW	13	65181654	nonsense	probably null
R6751:Nlrp4f	UTSW	13	65194429	missense	probably damaging	0.99
R7110:Nlrp4f	UTSW	13	65199346	missense	probably damaging	0.96
R7143:Nlrp4f	UTSW	13	65195306	missense	probably damaging	1.00
R7143:Nlrp4f	UTSW	13	65199352	missense	possibly damaging	0.90
R7187:Nlrp4f	UTSW	13	65195387	missense	possibly damaging	0.47
R7230:Nlrp4f	UTSW	13	65194901	missense	probably benign	0.16
R7501:Nlrp4f	UTSW	13	65194329	missense	probably damaging	0.99
R7863:Nlrp4f	UTSW	13	65194245	missense	possibly damaging	0.63
R7889:Nlrp4f	UTSW	13	65195018	missense	probably damaging	1.00
R8472:Nlrp4f	UTSW	13	65194331	missense	possibly damaging	0.87
R8553:Nlrp4f	UTSW	13	65195438	missense	possibly damaging	0.66
R8972:Nlrp4f	UTSW	13	65182935	missense	probably benign	0.13
R9133:Nlrp4f	UTSW	13	65185069	nonsense	probably null
R9224:Nlrp4f	UTSW	13	65185015	nonsense	probably null
R9460:Nlrp4f	UTSW	13	65194192	missense	possibly damaging	0.79
R9562:Nlrp4f	UTSW	13	65199239	missense	probably damaging	0.99
Z1088:Nlrp4f	UTSW	13	65194302	missense	probably benign	0.00
Z1177:Nlrp4f	UTSW	13	65194661	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGTGTCTTGCCAACTCCAGC -3'
(R):5'- CACATACACACAATTGTTCTAGGTG -3'

Sequencing Primer
(F):5'- AGCCATGCCTTTCAGGAAC -3'
(R):5'- ATTTAACACCTCTGACTTCCATAGG -3'

Posted On

2019-06-26