Mutagenetix > Incidental Mutation

Incidental Mutation 'R7284:Tcaf2'

565858

Institutional Source

Beutler Lab

Gene Symbol

Tcaf2

Ensembl Gene

ENSMUSG00000029851

Gene Name

TRPM8 channel-associated factor 2

Synonyms

Fam115c

MMRRC Submission

045392-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.105) question?

Stock #

R7284 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

42599950-42622134 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 42606472 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 494 (L494P)

Ref Sequence

ENSEMBL: ENSMUSP00000031879 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031879]

AlphaFold

Q921K8

Predicted Effect

probably damaging
Transcript: ENSMUST00000031879
AA Change: L494P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000031879
Gene: ENSMUSG00000029851
AA Change: L494P

Domain	Start	End	E-Value	Type
low complexity region	515	526	N/A	INTRINSIC
M60-like	543	842	4.85e-138	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.3%

Validation Efficiency

99% (77/78)

Allele List at MGI

All alleles(1) : Targeted(1)

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2900092C05Rik	G	T	7: 12,246,605 (GRCm39)	E34*	probably null	Het
4933421I07Rik	C	T	7: 42,097,404 (GRCm39)	R30H	probably damaging	Het
AB124611	C	A	9: 21,450,400 (GRCm39)	Q158K	probably benign	Het
Abcc3	C	T	11: 94,247,873 (GRCm39)	A1207T	probably benign	Het
Abcc9	A	T	6: 142,628,643 (GRCm39)	L367Q	probably damaging	Het
Aftph	T	C	11: 20,676,812 (GRCm39)	K266E	probably benign	Het
Akap9	T	A	5: 4,006,246 (GRCm39)	D190E	probably damaging	Het
Angel1	G	T	12: 86,767,298 (GRCm39)	D359E	probably damaging	Het
Ano6	T	C	15: 95,846,184 (GRCm39)	I474T	probably damaging	Het
Atp2c1	A	T	9: 105,398,008 (GRCm39)		probably null	Het
Best1	T	C	19: 9,963,737 (GRCm39)		probably null	Het
Bhlha9	A	G	11: 76,563,492 (GRCm39)	S40G	probably benign	Het
Cabin1	G	A	10: 75,530,668 (GRCm39)	R178C		Het
Ccnb1ip1	A	G	14: 51,029,736 (GRCm39)	Y109H	probably damaging	Het
Col14a1	T	C	15: 55,381,715 (GRCm39)	S1763P	probably damaging	Het
Dars1	T	C	1: 128,300,004 (GRCm39)	T327A	probably benign	Het
Dhx8	T	C	11: 101,645,648 (GRCm39)	Y889H	probably damaging	Het
Dlg4	T	A	11: 69,932,908 (GRCm39)	Y523*	probably null	Het
Dnah10	A	T	5: 124,909,662 (GRCm39)	D4484V	probably benign	Het
Dnah9	A	T	11: 65,881,302 (GRCm39)	M2591K	probably damaging	Het
Dock2	T	C	11: 34,180,672 (GRCm39)	E1715G	probably benign	Het
Dym	A	G	18: 75,252,242 (GRCm39)	Y336C	possibly damaging	Het
Ezh2	A	G	6: 47,521,453 (GRCm39)	M439T	probably benign	Het
Folr1	T	G	7: 101,508,677 (GRCm39)	N83H	possibly damaging	Het
Ganab	T	C	19: 8,889,904 (GRCm39)	L656P	probably damaging	Het
Gmnc	T	C	16: 26,779,542 (GRCm39)	H161R	probably benign	Het
Gria4	A	G	9: 4,472,017 (GRCm39)	Y491H	probably damaging	Het
Heatr3	T	A	8: 88,883,402 (GRCm39)	C412S	possibly damaging	Het
Hmgcr	A	C	13: 96,789,173 (GRCm39)	V716G	probably damaging	Het
Igsf9	A	G	1: 172,324,479 (GRCm39)	D799G	probably damaging	Het
Ikbkb	T	C	8: 23,158,976 (GRCm39)	T501A	probably benign	Het
Kbtbd3	C	T	9: 4,330,690 (GRCm39)	R355*	probably null	Het
Kcna7	T	A	7: 45,058,652 (GRCm39)	I313N	probably damaging	Het
Kirrel1	A	C	3: 86,990,694 (GRCm39)	D709E	probably benign	Het
Klb	T	A	5: 65,540,821 (GRCm39)	S971R	probably benign	Het
Krtap4-13	A	T	11: 99,700,238 (GRCm39)	C140*	probably null	Het
Lacc1	A	T	14: 77,268,309 (GRCm39)	L334Q	probably damaging	Het
Map6d1	T	A	16: 20,059,775 (GRCm39)	R97*	probably null	Het
Mgat5b	T	C	11: 116,835,746 (GRCm39)	S129P	probably damaging	Het
Mmp1a	TG	TGG	9: 7,465,083 (GRCm38)		probably null	Het
Myh9	G	A	15: 77,671,796 (GRCm39)	R432C	probably damaging	Het
Ncf4	A	G	15: 78,144,902 (GRCm39)	T236A	probably benign	Het
Neb	T	C	2: 52,148,804 (GRCm39)	D2581G	probably damaging	Het
Nid1	T	A	13: 13,663,675 (GRCm39)	M778K	probably benign	Het
Npas2	A	G	1: 39,363,548 (GRCm39)	D209G	probably benign	Het
Nploc4	C	T	11: 120,307,196 (GRCm39)	V181I	possibly damaging	Het
Nrcam	A	T	12: 44,610,817 (GRCm39)	I506F	probably damaging	Het
Or52w1	T	A	7: 105,017,752 (GRCm39)	M73K	probably damaging	Het
Or5h27	A	G	16: 59,006,331 (GRCm39)	*172Q	probably null	Het
Or6c3b	T	C	10: 129,527,220 (GRCm39)	N230S	probably benign	Het
Pask	T	A	1: 93,248,391 (GRCm39)	Q970L	probably benign	Het
Pfkfb4	T	C	9: 108,840,308 (GRCm39)	I308T	possibly damaging	Het
Pla2g4d	A	T	2: 120,114,617 (GRCm39)	L38Q	probably damaging	Het
Pld1	A	G	3: 28,185,882 (GRCm39)	T1036A	possibly damaging	Het
Pom121l2	A	G	13: 22,166,775 (GRCm39)	T349A	probably damaging	Het
Ppp1r13b	A	G	12: 111,801,400 (GRCm39)	I551T	possibly damaging	Het
Prps1l1	A	G	12: 35,035,317 (GRCm39)	N144S	possibly damaging	Het
Prss56	A	G	1: 87,113,123 (GRCm39)	N179S	probably null	Het
Prune2	T	C	19: 17,097,250 (GRCm39)	L918P	probably damaging	Het
Ptprz1	C	T	6: 23,000,097 (GRCm39)	T729I	probably damaging	Het
Relch	T	A	1: 105,662,308 (GRCm39)	H942Q	probably benign	Het
Rrp7a	T	C	15: 83,006,071 (GRCm39)	T60A	probably damaging	Het
Snx27	A	G	3: 94,431,498 (GRCm39)	Y299H	probably damaging	Het
Spaca3	G	T	11: 80,754,847 (GRCm39)	R96L	possibly damaging	Het
Stat1	A	G	1: 52,188,081 (GRCm39)	N495S	probably benign	Het
Tas2r130	T	C	6: 131,607,270 (GRCm39)	N175S	probably benign	Het
Tdrd12	C	A	7: 35,179,561 (GRCm39)		probably null	Het
Thbs1	A	G	2: 117,949,837 (GRCm39)	N604S	probably damaging	Het
Togaram1	T	C	12: 65,055,454 (GRCm39)	F1482L	probably benign	Het
Trhr2	A	T	8: 123,087,114 (GRCm39)	S109T	probably damaging	Het
Trpc3	A	T	3: 36,678,562 (GRCm39)	M841K	probably damaging	Het
Tubgcp5	C	T	7: 55,473,315 (GRCm39)	R798C	probably benign	Het
Xirp2	T	A	2: 67,347,173 (GRCm39)	M3138K	probably benign	Het
Zdhhc4	G	A	5: 143,307,646 (GRCm39)	T125I	probably benign	Het
Zfp239	T	A	6: 117,848,716 (GRCm39)	C151*	probably null	Het
Zfp473	C	T	7: 44,382,627 (GRCm39)	E569K	not run	Het
Zzef1	T	A	11: 72,777,516 (GRCm39)	D1782E	probably damaging	Het

Other mutations in Tcaf2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00333:Tcaf2	APN	6	42,606,970 (GRCm39)	nonsense	probably null
IGL00909:Tcaf2	APN	6	42,601,510 (GRCm39)	missense	probably damaging	1.00
IGL01448:Tcaf2	APN	6	42,607,262 (GRCm39)	missense	probably benign	0.05
IGL01870:Tcaf2	APN	6	42,601,411 (GRCm39)	missense	possibly damaging	0.47
IGL02133:Tcaf2	APN	6	42,604,330 (GRCm39)	missense	probably benign	0.06
IGL02208:Tcaf2	APN	6	42,606,020 (GRCm39)	missense	probably damaging	1.00
IGL02666:Tcaf2	APN	6	42,606,058 (GRCm39)	splice site	probably benign
jiaozhi	UTSW	6	42,603,371 (GRCm39)	missense	probably damaging	1.00
PIT4260001:Tcaf2	UTSW	6	42,619,739 (GRCm39)	missense	probably damaging	0.97
PIT4382001:Tcaf2	UTSW	6	42,601,300 (GRCm39)	makesense	probably null
R0029:Tcaf2	UTSW	6	42,607,093 (GRCm39)	nonsense	probably null
R0029:Tcaf2	UTSW	6	42,607,093 (GRCm39)	nonsense	probably null
R0047:Tcaf2	UTSW	6	42,606,547 (GRCm39)	missense	probably benign
R0047:Tcaf2	UTSW	6	42,606,547 (GRCm39)	missense	probably benign
R0255:Tcaf2	UTSW	6	42,619,838 (GRCm39)	missense	possibly damaging	0.95
R0617:Tcaf2	UTSW	6	42,619,445 (GRCm39)	missense	probably damaging	0.97
R1387:Tcaf2	UTSW	6	42,601,512 (GRCm39)	missense	probably damaging	1.00
R1523:Tcaf2	UTSW	6	42,601,385 (GRCm39)	nonsense	probably null
R1529:Tcaf2	UTSW	6	42,606,440 (GRCm39)	missense	probably benign	0.03
R1698:Tcaf2	UTSW	6	42,604,951 (GRCm39)	nonsense	probably null
R1992:Tcaf2	UTSW	6	42,606,791 (GRCm39)	missense	probably benign
R2065:Tcaf2	UTSW	6	42,604,981 (GRCm39)	missense	probably benign	0.12
R2144:Tcaf2	UTSW	6	42,619,738 (GRCm39)	missense	probably benign	0.45
R2435:Tcaf2	UTSW	6	42,607,298 (GRCm39)	missense	possibly damaging	0.72
R2519:Tcaf2	UTSW	6	42,606,365 (GRCm39)	missense	possibly damaging	0.92
R3979:Tcaf2	UTSW	6	42,619,481 (GRCm39)	missense	probably damaging	1.00
R4093:Tcaf2	UTSW	6	42,619,772 (GRCm39)	missense	probably damaging	1.00
R4532:Tcaf2	UTSW	6	42,603,371 (GRCm39)	missense	probably damaging	1.00
R4780:Tcaf2	UTSW	6	42,604,996 (GRCm39)	missense	probably damaging	1.00
R4906:Tcaf2	UTSW	6	42,606,679 (GRCm39)	missense	probably benign	0.02
R4993:Tcaf2	UTSW	6	42,619,574 (GRCm39)	missense	probably damaging	1.00
R5076:Tcaf2	UTSW	6	42,606,401 (GRCm39)	missense	probably benign	0.16
R5643:Tcaf2	UTSW	6	42,619,707 (GRCm39)	missense	possibly damaging	0.85
R5644:Tcaf2	UTSW	6	42,619,707 (GRCm39)	missense	possibly damaging	0.85
R5975:Tcaf2	UTSW	6	42,619,712 (GRCm39)	missense	probably benign	0.22
R6234:Tcaf2	UTSW	6	42,607,308 (GRCm39)	missense	probably benign
R6269:Tcaf2	UTSW	6	42,604,342 (GRCm39)	missense	probably damaging	1.00
R6276:Tcaf2	UTSW	6	42,606,687 (GRCm39)	missense	probably benign	0.04
R6375:Tcaf2	UTSW	6	42,603,112 (GRCm39)	missense	probably damaging	0.99
R6523:Tcaf2	UTSW	6	42,619,953 (GRCm39)	missense	probably benign	0.01
R6825:Tcaf2	UTSW	6	42,606,452 (GRCm39)	missense	probably benign	0.05
R7039:Tcaf2	UTSW	6	42,603,074 (GRCm39)	missense	probably damaging	1.00
R7099:Tcaf2	UTSW	6	42,607,275 (GRCm39)	missense	probably benign	0.02
R7822:Tcaf2	UTSW	6	42,606,033 (GRCm39)	missense	possibly damaging	0.95
R7964:Tcaf2	UTSW	6	42,606,640 (GRCm39)	missense	probably benign
R8270:Tcaf2	UTSW	6	42,606,958 (GRCm39)	missense	probably benign	0.30
R8505:Tcaf2	UTSW	6	42,606,475 (GRCm39)	missense	probably benign	0.18
R8702:Tcaf2	UTSW	6	42,619,701 (GRCm39)	missense	probably benign	0.11
R8788:Tcaf2	UTSW	6	42,606,472 (GRCm39)	missense	probably damaging	1.00
R8979:Tcaf2	UTSW	6	42,601,404 (GRCm39)	missense	probably damaging	1.00
R9374:Tcaf2	UTSW	6	42,619,728 (GRCm39)	missense	probably benign	0.02
R9379:Tcaf2	UTSW	6	42,619,517 (GRCm39)	missense	probably benign	0.00
Y4339:Tcaf2	UTSW	6	42,606,406 (GRCm39)	missense	probably benign
Y4341:Tcaf2	UTSW	6	42,606,406 (GRCm39)	missense	probably benign
Z1177:Tcaf2	UTSW	6	42,606,550 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CCCAGGCCAAGAATACTCTG -3'
(R):5'- AGTTCCAAGCTATGTTGAACCAC -3'

Sequencing Primer
(F):5'- AAGAATACTCTGGGCATTCTCTGC -3'
(R):5'- CCAAGCTATGTTGAACCACAAGGAG -3'

Posted On

2019-06-26