Mutagenetix > Incidental Mutation

Incidental Mutation 'R7292:Igsf9'

566463

Institutional Source

Beutler Lab

Gene Symbol

Igsf9

Ensembl Gene

ENSMUSG00000037995

Gene Name

immunoglobulin superfamily, member 9

Synonyms

NRT1, Dasm1

MMRRC Submission

045397-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7292 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

172309355-172326445 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (1 bp from exon)

DNA Base Change (assembly)

G to T at 172319324 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000058275 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000052629] [ENSMUST00000111235] [ENSMUST00000127052] [ENSMUST00000127482] [ENSMUST00000135267]

AlphaFold

Q05BQ1

Predicted Effect

probably null
Transcript: ENSMUST00000052629

SMART Domains

Protein: ENSMUSP00000058275
Gene: ENSMUSG00000037995

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IG	26	131	6.81e-6	SMART
IGc2	149	213	4.92e-12	SMART
IG	233	320	8.64e-8	SMART
IG_like	329	412	4.3e1	SMART
IGc2	431	493	9.12e-7	SMART
FN3	508	593	1.82e-4	SMART
FN3	624	705	7.01e-6	SMART
transmembrane domain	737	759	N/A	INTRINSIC
low complexity region	785	800	N/A	INTRINSIC
low complexity region	823	834	N/A	INTRINSIC
low complexity region	909	930	N/A	INTRINSIC
low complexity region	942	953	N/A	INTRINSIC
low complexity region	1143	1165	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000111235

SMART Domains

Protein: ENSMUSP00000106866
Gene: ENSMUSG00000037995

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IG	26	131	6.81e-6	SMART
IGc2	149	213	4.92e-12	SMART
IG	233	320	8.64e-8	SMART
IG_like	329	412	4.3e1	SMART
IGc2	431	493	9.12e-7	SMART
FN3	508	593	1.82e-4	SMART
FN3	624	705	7.01e-6	SMART
transmembrane domain	737	759	N/A	INTRINSIC
low complexity region	785	800	N/A	INTRINSIC
low complexity region	823	834	N/A	INTRINSIC
low complexity region	909	930	N/A	INTRINSIC
low complexity region	942	953	N/A	INTRINSIC
low complexity region	1143	1165	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000127052

SMART Domains

Protein: ENSMUSP00000123401
Gene: ENSMUSG00000037995

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
Blast:IG	26	109	6e-55	BLAST
SCOP:d1biha2	28	108	6e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000127482

SMART Domains

Protein: ENSMUSP00000117854
Gene: ENSMUSG00000037995

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IG	26	131	6.81e-6	SMART
IGc2	149	213	4.92e-12	SMART
IG	233	320	8.64e-8	SMART
IG_like	329	412	4.3e1	SMART
IGc2	431	493	9.12e-7	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000135267

SMART Domains

Protein: ENSMUSP00000116948
Gene: ENSMUSG00000037995

Domain	Start	End	E-Value	Type
IG_like	4	68	3.29e1	SMART
IGc2	86	148	3.03e-12	SMART
low complexity region	156	168	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000193620

Meta Mutation Damage Score

0.9494

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (66/66)

MGI Phenotype

PHENOTYPE: Mice homozygous for a targeted null mutation are viable and fertile but show abnormal miniature inhibitory postsynaptic currents and increased susceptibility to pharmacologically induced seizures. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700010I14Rik	T	A	17: 9,215,861 (GRCm39)	C322*	probably null	Het
4930553M12Rik	G	A	4: 88,786,568 (GRCm39)	R17C	unknown	Het
Abcc8	G	A	7: 45,784,950 (GRCm39)	T726I	probably benign	Het
Adamts18	T	C	8: 114,436,277 (GRCm39)	T981A	probably benign	Het
Adgrb3	A	G	1: 25,570,957 (GRCm39)	C507R	probably damaging	Het
Bloc1s6	T	A	2: 122,584,615 (GRCm39)	D63E	probably damaging	Het
Cdc25b	C	T	2: 131,033,093 (GRCm39)	R135W	probably damaging	Het
Cdca2	G	T	14: 67,915,326 (GRCm39)	Y644*	probably null	Het
Ceacam10	G	T	7: 24,477,775 (GRCm39)	G97C	probably damaging	Het
Cenpf	G	A	1: 189,382,891 (GRCm39)	L2668F	probably damaging	Het
Cog4	A	G	8: 111,608,460 (GRCm39)	D774G	probably damaging	Het
Col11a2	G	A	17: 34,270,482 (GRCm39)	G511E	unknown	Het
Col19a1	T	A	1: 24,569,089 (GRCm39)	I220F	unknown	Het
Cubn	G	T	2: 13,429,550 (GRCm39)	T1317K	probably damaging	Het
Dnaaf5	T	C	5: 139,136,072 (GRCm39)	L24P	unknown	Het
Eif4a3l2	G	A	6: 116,528,438 (GRCm39)	R105Q	probably damaging	Het
Fan1	T	A	7: 64,022,234 (GRCm39)	N340Y	probably damaging	Het
Foxn4	C	A	5: 114,396,716 (GRCm39)	E256*	probably null	Het
Gm5930	A	G	14: 44,574,014 (GRCm39)	S108P	probably damaging	Het
Gnl3	A	G	14: 30,735,189 (GRCm39)	S468P	probably benign	Het
Gzmb	A	T	14: 56,499,576 (GRCm39)	S11T	probably benign	Het
Hmcn1	T	C	1: 150,608,880 (GRCm39)		probably null	Het
Ifi206	A	G	1: 173,301,428 (GRCm39)	L750P	unknown	Het
Ifi213	T	A	1: 173,422,691 (GRCm39)	E58V	probably damaging	Het
Igkv4-78	A	T	6: 69,036,752 (GRCm39)	Y94N	probably damaging	Het
Itpr2	G	T	6: 146,060,447 (GRCm39)	L2490M	possibly damaging	Het
Kdm2b	A	G	5: 123,018,854 (GRCm39)	F862S	probably damaging	Het
Kif19b	A	G	5: 140,457,425 (GRCm39)	D398G	probably benign	Het
Meis1	A	G	11: 18,961,351 (GRCm39)	I174T	probably damaging	Het
Micu3	A	G	8: 40,835,166 (GRCm39)	Q507R	probably benign	Het
Mpp4	C	T	1: 59,182,969 (GRCm39)	E313K	possibly damaging	Het
Nfatc4	G	A	14: 56,062,512 (GRCm39)	E7K	probably damaging	Het
Or7g16	A	T	9: 18,727,486 (GRCm39)	Y35N	probably damaging	Het
Or9s18	T	A	13: 65,300,656 (GRCm39)	V206D	possibly damaging	Het
Osbpl5	G	A	7: 143,255,015 (GRCm39)	P470S	probably damaging	Het
Pak6	A	G	2: 118,524,072 (GRCm39)	D409G	possibly damaging	Het
Pierce1	TCTCTGGGGCAGGCTTAGCCTTGGGCTCCCCCGGCTCCGGCTCCTCTGGGGCAGGCTTAGCCTTGGGCTCCCCCGGCTCCGGCTCCTCTGGGGCGGGCTTAGCCTTGGGCTCCCCCGGCTCCGGCTCCTC	TCTCTGGGGCAGGCTTAGCCTTGGGCTCCCCCGGCTCCGGCTCCTCTGGGGCGGGCTTAGCCTTGGGCTCCCCCGGCTCCGGCTCCTC	2: 28,356,122 (GRCm39)		probably benign	Het
Pkhd1l1	T	A	15: 44,361,986 (GRCm39)	M553K	probably benign	Het
Ppp2r3d	T	C	9: 101,089,871 (GRCm39)	N151D	probably damaging	Het
Prdm12	T	C	2: 31,533,862 (GRCm39)	W160R	probably damaging	Het
Prdm2	G	A	4: 142,859,471 (GRCm39)	T1273M	possibly damaging	Het
Prl2a1	A	G	13: 27,991,353 (GRCm39)		probably null	Het
Prob1	G	A	18: 35,787,603 (GRCm39)	P217L	possibly damaging	Het
Ramp1	A	C	1: 91,124,499 (GRCm39)	H20P	probably benign	Het
Rbm47	T	A	5: 66,184,093 (GRCm39)	E170V	possibly damaging	Het
Relch	G	T	1: 105,649,141 (GRCm39)		probably null	Het
Rpn1	C	T	6: 88,067,066 (GRCm39)	P142L	probably damaging	Het
Rsu1	C	T	2: 13,174,827 (GRCm39)	R238H	probably damaging	Het
Sh3rf3	C	T	10: 58,907,795 (GRCm39)	P441L	probably damaging	Het
Slc1a6	A	G	10: 78,650,438 (GRCm39)	S559G	possibly damaging	Het
Slc35f5	C	A	1: 125,500,222 (GRCm39)	S245R	probably damaging	Het
Spcs3	T	C	8: 54,979,554 (GRCm39)	N76D	probably benign	Het
Spmip5	A	T	19: 58,777,539 (GRCm39)	Y90*	probably null	Het
Svep1	T	C	4: 58,111,395 (GRCm39)	T1075A	possibly damaging	Het
Sympk	A	T	7: 18,769,955 (GRCm39)	I211F	probably benign	Het
Tk1	C	T	11: 117,716,603 (GRCm39)	M1I	probably null	Het
Tln2	A	G	9: 67,253,743 (GRCm39)	V776A	probably benign	Het
Tmem94	G	T	11: 115,677,082 (GRCm39)	R118L	possibly damaging	Het
Tnk2	T	C	16: 32,499,618 (GRCm39)	V977A	probably benign	Het
Toporsl	A	T	4: 52,611,630 (GRCm39)	S508C	probably benign	Het
Trank1	A	C	9: 111,206,938 (GRCm39)	R1690S	probably benign	Het
Trio	T	A	15: 27,828,437 (GRCm39)	Q1409L	possibly damaging	Het
Vit	T	C	17: 78,912,927 (GRCm39)	F287L	probably benign	Het
Vmn2r109	G	C	17: 20,761,700 (GRCm39)	D552E	probably benign	Het
Zw10	T	C	9: 48,972,491 (GRCm39)	V186A	probably benign	Het

Other mutations in Igsf9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00819:Igsf9	APN	1	172,324,203 (GRCm39)	missense	probably benign
IGL01665:Igsf9	APN	1	172,319,738 (GRCm39)	nonsense	probably null
IGL01808:Igsf9	APN	1	172,312,370 (GRCm39)	missense	probably benign	0.03
IGL02480:Igsf9	APN	1	172,312,345 (GRCm39)	intron	probably benign
IGL02480:Igsf9	APN	1	172,324,480 (GRCm39)	missense	possibly damaging	0.88
IGL03087:Igsf9	APN	1	172,318,310 (GRCm39)	missense	probably benign	0.00
degree	UTSW	1	172,319,324 (GRCm39)	critical splice donor site	probably null
G1citation:Igsf9	UTSW	1	172,324,730 (GRCm39)	missense	possibly damaging	0.95
R1258:Igsf9	UTSW	1	172,319,722 (GRCm39)	missense	probably benign	0.02
R1419:Igsf9	UTSW	1	172,325,578 (GRCm39)	missense	probably damaging	1.00
R2246:Igsf9	UTSW	1	172,319,216 (GRCm39)	missense	probably benign	0.21
R2427:Igsf9	UTSW	1	172,318,306 (GRCm39)	missense	probably damaging	0.98
R3900:Igsf9	UTSW	1	172,317,125 (GRCm39)	missense	probably damaging	1.00
R4334:Igsf9	UTSW	1	172,321,779 (GRCm39)	nonsense	probably null
R4831:Igsf9	UTSW	1	172,319,455 (GRCm39)	missense	probably damaging	1.00
R4844:Igsf9	UTSW	1	172,324,737 (GRCm39)	missense	probably benign	0.00
R4894:Igsf9	UTSW	1	172,325,634 (GRCm39)	missense	probably benign	0.00
R5016:Igsf9	UTSW	1	172,318,279 (GRCm39)	missense	probably damaging	1.00
R5358:Igsf9	UTSW	1	172,312,078 (GRCm39)	missense	probably benign	0.01
R5705:Igsf9	UTSW	1	172,322,338 (GRCm39)	missense	possibly damaging	0.80
R5762:Igsf9	UTSW	1	172,326,005 (GRCm39)	missense	probably damaging	1.00
R6058:Igsf9	UTSW	1	172,312,456 (GRCm39)	missense	probably damaging	1.00
R6510:Igsf9	UTSW	1	172,317,864 (GRCm39)	missense	possibly damaging	0.78
R6821:Igsf9	UTSW	1	172,312,060 (GRCm39)	missense	probably benign	0.39
R6822:Igsf9	UTSW	1	172,324,730 (GRCm39)	missense	possibly damaging	0.95
R6829:Igsf9	UTSW	1	172,323,241 (GRCm39)	missense	probably benign
R6848:Igsf9	UTSW	1	172,323,329 (GRCm39)	missense	probably damaging	1.00
R6874:Igsf9	UTSW	1	172,322,096 (GRCm39)	missense	probably benign
R7224:Igsf9	UTSW	1	172,322,349 (GRCm39)	missense	probably damaging	1.00
R7284:Igsf9	UTSW	1	172,324,479 (GRCm39)	missense	probably damaging	0.99
R7409:Igsf9	UTSW	1	172,322,841 (GRCm39)	missense	probably benign
R7744:Igsf9	UTSW	1	172,319,752 (GRCm39)	missense	probably benign	0.37
R7826:Igsf9	UTSW	1	172,319,197 (GRCm39)	missense	probably benign	0.01
R7893:Igsf9	UTSW	1	172,324,869 (GRCm39)	missense	probably damaging	1.00
R8971:Igsf9	UTSW	1	172,312,033 (GRCm39)	start gained	probably benign
R9037:Igsf9	UTSW	1	172,312,081 (GRCm39)	missense	probably benign	0.02
R9527:Igsf9	UTSW	1	172,323,244 (GRCm39)	missense	probably damaging	1.00
V7732:Igsf9	UTSW	1	172,317,960 (GRCm39)	missense	probably benign	0.19
Z1176:Igsf9	UTSW	1	172,322,793 (GRCm39)	missense	probably benign	0.27
Z1176:Igsf9	UTSW	1	172,319,716 (GRCm39)	missense	probably damaging	0.99
Z1177:Igsf9	UTSW	1	172,322,439 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTGAGGACACCTTTCTGCCTTG -3'
(R):5'- GTGGATGCAGAAAGCCATTGC -3'

Sequencing Primer
(F):5'- GGTACTTCTCCCAGGACCC -3'
(R):5'- TATAGTGGCCGGCGTCATCAG -3'

Posted On

2019-06-26