Incidental Mutation 'R7293:Snx31'
ID 566587
Institutional Source Beutler Lab
Gene Symbol Snx31
Ensembl Gene ENSMUSG00000013611
Gene Name sorting nexin 31
Synonyms 4631426E05Rik
MMRRC Submission 045398-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7293 (G1)
Quality Score 225.009
Status Validated
Chromosome 15
Chromosomal Location 36504208-36555718 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 36523596 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Isoleucine at position 362 (T362I)
Ref Sequence ENSEMBL: ENSMUSP00000124063 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000013755] [ENSMUST00000161202]
AlphaFold Q6P8Y7
Predicted Effect probably damaging
Transcript: ENSMUST00000013755
AA Change: T362I

PolyPhen 2 Score 0.981 (Sensitivity: 0.75; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000013755
Gene: ENSMUSG00000013611
AA Change: T362I

DomainStartEndE-ValueType
PX 1 105 5.44e-9 SMART
PDB:4GXB|A 112 382 1e-64 PDB
Blast:B41 115 324 1e-49 BLAST
Predicted Effect probably damaging
Transcript: ENSMUST00000161202
AA Change: T362I

PolyPhen 2 Score 0.968 (Sensitivity: 0.77; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000124063
Gene: ENSMUSG00000013611
AA Change: T362I

DomainStartEndE-ValueType
PX 1 105 5.44e-9 SMART
PDB:4GXB|A 112 382 1e-64 PDB
Blast:B41 115 324 1e-49 BLAST
Meta Mutation Damage Score 0.4237 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 98.9%
Validation Efficiency 97% (74/76)
Allele List at MGI
Other mutations in this stock
Total: 75 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcc2 G A 19: 43,795,492 (GRCm39) G416E probably damaging Het
Acsl5 G T 19: 55,279,642 (GRCm39) W460L probably damaging Het
Adam2 A G 14: 66,272,634 (GRCm39) F614S probably benign Het
Adamts5 G A 16: 85,696,833 (GRCm39) T108I probably benign Het
Agmat C T 4: 141,483,246 (GRCm39) Q227* probably null Het
Alg11 A G 8: 22,555,395 (GRCm39) N219D probably damaging Het
Amhr2 A G 15: 102,355,828 (GRCm39) T258A probably benign Het
Ankrd53 A G 6: 83,740,178 (GRCm39) E82G probably null Het
Blzf1 T A 1: 164,123,452 (GRCm39) T292S possibly damaging Het
Capza1 T C 3: 104,748,151 (GRCm39) D71G probably benign Het
Cc2d1b T C 4: 108,488,873 (GRCm39) F770L probably benign Het
Cckbr A T 7: 105,083,852 (GRCm39) Q260L probably benign Het
Cep162 T C 9: 87,085,836 (GRCm39) T1163A probably benign Het
Chd9 T C 8: 91,760,707 (GRCm39) S2151P unknown Het
Clk1 T A 1: 58,453,772 (GRCm39) T301S probably benign Het
Cmya5 T A 13: 93,229,305 (GRCm39) S1928C possibly damaging Het
Col24a1 C T 3: 145,192,059 (GRCm39) Q1273* probably null Het
Col4a4 T C 1: 82,501,664 (GRCm39) D363G unknown Het
Copb1 A T 7: 113,818,837 (GRCm39) M827K probably damaging Het
Crocc C T 4: 140,770,867 (GRCm39) A351T probably benign Het
Crybg1 T C 10: 43,879,428 (GRCm39) T587A probably damaging Het
Csrnp3 A G 2: 65,779,344 (GRCm39) R19G probably damaging Het
Cyb5rl T C 4: 106,938,143 (GRCm39) I165T probably damaging Het
Dnah1 A T 14: 31,009,820 (GRCm39) I1916N probably damaging Het
Dvl1 T C 4: 155,940,625 (GRCm39) M415T possibly damaging Het
Dync2h1 A G 9: 7,001,454 (GRCm39) S3845P possibly damaging Het
Eif3b A G 5: 140,405,183 (GRCm39) Q23R probably benign Het
Esam G T 9: 37,449,020 (GRCm39) R376L probably damaging Het
Fat3 G C 9: 15,826,336 (GRCm39) H391D Het
Fat3 A C 9: 15,826,592 (GRCm39) S305R Het
Fgd3 T C 13: 49,418,134 (GRCm39) D644G probably benign Het
Fgf7 T C 2: 125,877,672 (GRCm39) L13P probably damaging Het
Gas2l1 A G 11: 5,014,338 (GRCm39) Y41H probably damaging Het
Glg1 A T 8: 111,895,375 (GRCm39) I812N probably damaging Het
Glp1r C T 17: 31,143,599 (GRCm39) H212Y probably benign Het
Gm5622 G T 14: 51,893,339 (GRCm39) E89* probably null Het
Gpr158 G A 2: 21,581,750 (GRCm39) V410I possibly damaging Het
Ighv1-53 A T 12: 115,122,441 (GRCm39) C5* probably null Het
Itgb2l A C 16: 96,227,996 (GRCm39) Y502* probably null Het
Jakmip1 G A 5: 37,284,817 (GRCm39) V635I probably benign Het
Kplce A T 3: 92,776,126 (GRCm39) C186S probably benign Het
Krt23 C T 11: 99,374,682 (GRCm39) M270I probably benign Het
Larp1b C T 3: 40,939,879 (GRCm39) A344V Het
Lin28b T C 10: 45,295,282 (GRCm39) M134V probably benign Het
Lrrc19 T A 4: 94,526,627 (GRCm39) Y310F probably benign Het
Lyst T A 13: 13,854,822 (GRCm39) D2397E probably benign Het
Map6 A G 7: 98,985,740 (GRCm39) N751S possibly damaging Het
Mgrn1 G A 16: 4,750,084 (GRCm39) D494N probably benign Het
Myh6 A G 14: 55,184,631 (GRCm39) F1567L probably benign Het
Myo9b T C 8: 71,778,549 (GRCm39) V461A probably benign Het
Ncan A T 8: 70,567,861 (GRCm39) S84T probably damaging Het
Nlrp9a G A 7: 26,270,694 (GRCm39) C908Y probably damaging Het
Or4c3 A T 2: 89,851,871 (GRCm39) Y180N probably damaging Het
Or4f4b A G 2: 111,313,699 (GRCm39) probably null Het
Or52n20 T A 7: 104,319,925 (GRCm39) N5K probably damaging Het
Or8g31-ps1 A T 9: 39,276,130 (GRCm39) M92L probably benign Het
Parp4 CTTCCTCCCCCTCCCCTTCTCTCTGCTGGCACCCATATTCCTCCCCCTCCCCTTCTCTCTGCTGGCACCCATCTTCCTCCCCCTCCCCTTCTCCCTGCTGGCACCCATATTCCTCCCCCTCCCC CTTCCTCCCCCTCCCCTTCTCTCTGCTGGCACCCATCTTCCTCCCCCTCCCCTTCTCCCTGCTGGCACCCATATTCCTCCCCCTCCCC 14: 56,885,303 (GRCm39) probably benign Het
Pld1 C A 3: 28,141,435 (GRCm39) T666K probably damaging Het
Pnpla6 A G 8: 3,588,068 (GRCm39) Y1107C probably damaging Het
Pramel7 A C 2: 87,322,706 (GRCm39) N19K probably benign Het
Prh1 C G 6: 132,548,721 (GRCm39) P76R unknown Het
Prkd2 T C 7: 16,579,865 (GRCm39) V121A possibly damaging Het
Ptprq G A 10: 107,471,367 (GRCm39) Q1345* probably null Het
Ryr3 T A 2: 112,732,948 (GRCm39) T653S probably benign Het
Sall2 G T 14: 52,551,868 (GRCm39) Y442* probably null Het
Slc23a2 A C 2: 131,931,026 (GRCm39) F158V probably benign Het
Smg1 C A 7: 117,765,322 (GRCm39) R1954L unknown Het
Taf3 G T 2: 9,956,901 (GRCm39) T422K probably damaging Het
Tcfl5 T C 2: 180,283,958 (GRCm39) D142G probably benign Het
Tmx1 A G 12: 70,507,325 (GRCm39) T188A probably damaging Het
Tnfrsf11a A G 1: 105,735,866 (GRCm39) probably null Het
Trio A T 15: 27,871,375 (GRCm39) C640S possibly damaging Het
Ulk4 T G 9: 121,084,190 (GRCm39) N427T probably damaging Het
Vmn1r202 T C 13: 22,685,872 (GRCm39) M182V probably benign Het
Vmn1r214 C T 13: 23,218,839 (GRCm39) A111V probably benign Het
Other mutations in Snx31
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00094:Snx31 APN 15 36,545,761 (GRCm39) critical splice acceptor site probably null
IGL01627:Snx31 APN 15 36,517,818 (GRCm39) missense probably damaging 1.00
IGL02514:Snx31 APN 15 36,525,728 (GRCm39) missense probably damaging 1.00
IGL03069:Snx31 APN 15 36,525,749 (GRCm39) nonsense probably null
IGL03182:Snx31 APN 15 36,525,833 (GRCm39) missense probably benign 0.00
R0755:Snx31 UTSW 15 36,534,576 (GRCm39) missense probably damaging 0.99
R1005:Snx31 UTSW 15 36,517,837 (GRCm39) splice site probably benign
R1463:Snx31 UTSW 15 36,539,444 (GRCm39) missense probably null 1.00
R1513:Snx31 UTSW 15 36,545,745 (GRCm39) missense probably damaging 0.99
R2030:Snx31 UTSW 15 36,525,848 (GRCm39) missense probably benign 0.31
R3404:Snx31 UTSW 15 36,525,799 (GRCm39) missense probably benign 0.00
R3720:Snx31 UTSW 15 36,523,704 (GRCm39) critical splice acceptor site probably null
R4152:Snx31 UTSW 15 36,525,785 (GRCm39) missense probably benign
R4474:Snx31 UTSW 15 36,546,256 (GRCm39) intron probably benign
R4729:Snx31 UTSW 15 36,523,698 (GRCm39) missense possibly damaging 0.92
R4998:Snx31 UTSW 15 36,539,513 (GRCm39) missense probably damaging 0.96
R5010:Snx31 UTSW 15 36,555,469 (GRCm39) missense probably damaging 1.00
R5375:Snx31 UTSW 15 36,525,730 (GRCm39) missense probably damaging 0.99
R5893:Snx31 UTSW 15 36,523,601 (GRCm39) missense probably damaging 0.98
R5970:Snx31 UTSW 15 36,523,634 (GRCm39) nonsense probably null
R6211:Snx31 UTSW 15 36,547,030 (GRCm39) missense probably damaging 0.98
R7198:Snx31 UTSW 15 36,555,455 (GRCm39) missense probably benign 0.04
R7329:Snx31 UTSW 15 36,555,621 (GRCm39) missense probably benign 0.00
R7741:Snx31 UTSW 15 36,523,587 (GRCm39) critical splice donor site probably null
R8057:Snx31 UTSW 15 36,523,606 (GRCm39) missense probably damaging 0.98
R8791:Snx31 UTSW 15 36,537,678 (GRCm39) missense probably benign 0.01
R8806:Snx31 UTSW 15 36,537,698 (GRCm39) missense probably damaging 1.00
R9349:Snx31 UTSW 15 36,555,430 (GRCm39) missense probably damaging 1.00
R9655:Snx31 UTSW 15 36,534,582 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GAATTATGACCATGGTGACCAAG -3'
(R):5'- TGAACTTTGCCCCTCTGGATG -3'

Sequencing Primer
(F):5'- CCATGGTGACCAAGAAAATAAAGC -3'
(R):5'- TGCTGAGTTACTGCCACG -3'
Posted On 2019-06-26