Incidental Mutation 'R0636:Mindy4'
ID 56671
Institutional Source Beutler Lab
Gene Symbol Mindy4
Ensembl Gene ENSMUSG00000038022
Gene Name MINDY lysine 48 deubiquitinase 4
Synonyms Fam188b, C330043M08Rik, LOC384387
MMRRC Submission 038825-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.069) question?
Stock # R0636 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 55180368-55297207 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 55253570 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Arginine to Serine at position 480 (R480S)
Ref Sequence ENSEMBL: ENSMUSP00000145151 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000053094] [ENSMUST00000204842]
AlphaFold Q3UQI9
Predicted Effect probably benign
Transcript: ENSMUST00000053094
AA Change: R480S

PolyPhen 2 Score 0.043 (Sensitivity: 0.94; Specificity: 0.83)
SMART Domains Protein: ENSMUSP00000061221
Gene: ENSMUSG00000038022
AA Change: R480S

DomainStartEndE-ValueType
low complexity region 154 166 N/A INTRINSIC
low complexity region 224 240 N/A INTRINSIC
low complexity region 265 277 N/A INTRINSIC
DUF4205 403 739 1.47e-187 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000203225
Predicted Effect possibly damaging
Transcript: ENSMUST00000204842
AA Change: R480S

PolyPhen 2 Score 0.732 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000145151
Gene: ENSMUSG00000038022
AA Change: R480S

DomainStartEndE-ValueType
low complexity region 154 166 N/A INTRINSIC
low complexity region 224 240 N/A INTRINSIC
low complexity region 265 277 N/A INTRINSIC
DUF4205 403 591 6.19e-10 SMART
Meta Mutation Damage Score 0.2843 question?
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 98.9%
  • 10x: 97.7%
  • 20x: 95.7%
Validation Efficiency 96% (74/77)
Allele List at MGI
Other mutations in this stock
Total: 74 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4921539E11Rik T C 4: 103,088,414 (GRCm39) Y264C probably damaging Het
8030423J24Rik T C 13: 71,032,344 (GRCm39) F139L unknown Het
Aco1 A G 4: 40,175,697 (GRCm39) E146G probably damaging Het
Adam2 T G 14: 66,272,265 (GRCm39) D639A probably benign Het
Adh4 G T 3: 138,133,835 (GRCm39) R315L probably damaging Het
Adprhl1 T C 8: 13,298,702 (GRCm39) D76G probably damaging Het
Akip1 T C 7: 109,306,726 (GRCm39) probably benign Het
Ap3d1 T A 10: 80,555,216 (GRCm39) K370* probably null Het
Arfgef1 C A 1: 10,270,076 (GRCm39) V358L probably benign Het
Arpp21 A T 9: 112,012,566 (GRCm39) D85E probably benign Het
Azi2 A T 9: 117,891,125 (GRCm39) L383F probably benign Het
Bpgm T A 6: 34,481,222 (GRCm39) D206E probably benign Het
Bsn T C 9: 107,985,033 (GRCm39) D3007G unknown Het
Ccdc142 T G 6: 83,084,179 (GRCm39) probably benign Het
Cep135 T C 5: 76,763,504 (GRCm39) V498A probably benign Het
Cntn6 A T 6: 104,840,109 (GRCm39) Q1003L probably benign Het
Cntnap2 T A 6: 47,273,642 (GRCm39) probably benign Het
Csf2rb2 G A 15: 78,176,160 (GRCm39) Q139* probably null Het
Cyp3a16 A G 5: 145,399,895 (GRCm39) V101A probably benign Het
D630045J12Rik T C 6: 38,173,713 (GRCm39) T152A probably benign Het
Def8 G A 8: 124,181,096 (GRCm39) W176* probably null Het
Dgkg A G 16: 22,398,479 (GRCm39) probably benign Het
Ear10 T C 14: 44,160,451 (GRCm39) probably null Het
Fbxw2 A T 2: 34,712,859 (GRCm39) Y67* probably null Het
Flii T A 11: 60,606,378 (GRCm39) Y1104F probably damaging Het
Gm973 G A 1: 59,590,303 (GRCm39) R270K probably benign Het
Gnl3 T A 14: 30,739,110 (GRCm39) K75N probably damaging Het
Gpc6 A T 14: 117,861,905 (GRCm39) M274L probably benign Het
Ifi47 A G 11: 48,987,478 (GRCm39) E415G possibly damaging Het
Ift57 A G 16: 49,532,259 (GRCm39) T130A probably benign Het
Itpr2 T A 6: 146,072,910 (GRCm39) D2373V probably damaging Het
Kat6a T C 8: 23,429,339 (GRCm39) S1565P possibly damaging Het
Klhl6 A T 16: 19,766,823 (GRCm39) probably benign Het
Klra2 T C 6: 131,197,067 (GRCm39) probably benign Het
Lama5 A G 2: 179,831,124 (GRCm39) probably null Het
Mapk4 A G 18: 74,063,525 (GRCm39) S566P probably benign Het
Mterf3 T C 13: 67,070,817 (GRCm39) probably benign Het
Mtmr2 A G 9: 13,713,209 (GRCm39) probably null Het
Myef2l T C 3: 10,153,843 (GRCm39) L204P possibly damaging Het
Naip5 T C 13: 100,356,196 (GRCm39) T1140A probably benign Het
Nf1 A G 11: 79,426,529 (GRCm39) T1648A probably damaging Het
Nlk A T 11: 78,586,670 (GRCm39) D141E probably benign Het
Noxa1 C A 2: 24,976,106 (GRCm39) probably benign Het
Or4g16 A G 2: 111,136,757 (GRCm39) N69S probably benign Het
Or5b121 A T 19: 13,507,613 (GRCm39) Y236F possibly damaging Het
Or5p55 T C 7: 107,566,679 (GRCm39) V25A probably benign Het
Otog G A 7: 45,913,652 (GRCm39) probably null Het
Pebp4 T C 14: 70,285,796 (GRCm39) probably benign Het
Phgdh G T 3: 98,240,607 (GRCm39) N100K possibly damaging Het
Pnisr T A 4: 21,873,800 (GRCm39) probably benign Het
Ptpn6 T C 6: 124,702,242 (GRCm39) H346R probably benign Het
Rsf1 T C 7: 97,311,226 (GRCm39) V652A possibly damaging Het
Rubcn G A 16: 32,649,056 (GRCm39) H624Y probably damaging Het
Semp2l2a T C 8: 13,887,870 (GRCm39) R74G probably benign Het
Setdb2 T C 14: 59,644,153 (GRCm39) N656D probably benign Het
Slc22a23 T C 13: 34,483,076 (GRCm39) T268A probably benign Het
Slc3a1 A T 17: 85,340,222 (GRCm39) T215S possibly damaging Het
Srsf2 A G 11: 116,742,904 (GRCm39) S206P probably benign Het
Susd2 T A 10: 75,475,184 (GRCm39) D542V probably damaging Het
Svep1 G A 4: 58,073,121 (GRCm39) Q2063* probably null Het
Syne2 G A 12: 75,977,757 (GRCm39) V1401M possibly damaging Het
Tenm2 A G 11: 36,834,803 (GRCm39) L64P probably damaging Het
Tigd2 A G 6: 59,188,272 (GRCm39) T380A possibly damaging Het
Trmt12 G T 15: 58,745,834 (GRCm39) V411F probably damaging Het
Ubr4 T C 4: 139,163,613 (GRCm39) probably null Het
Ush2a G A 1: 188,554,935 (GRCm39) C3571Y probably benign Het
Usp8 A G 2: 126,562,030 (GRCm39) M75V possibly damaging Het
Vcan C T 13: 89,852,825 (GRCm39) D712N probably damaging Het
Vcan C A 13: 89,860,386 (GRCm39) R327L probably damaging Het
Vps8 A G 16: 21,253,683 (GRCm39) E8G probably benign Het
Washc5 T C 15: 59,231,258 (GRCm39) D335G probably benign Het
Zbtb39 A G 10: 127,578,704 (GRCm39) N426S probably benign Het
Zfp184 T A 13: 22,133,919 (GRCm39) D55E probably damaging Het
Zfp882 T C 8: 72,668,181 (GRCm39) V336A probably benign Het
Other mutations in Mindy4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01098:Mindy4 APN 6 55,261,727 (GRCm39) splice site probably benign
IGL01483:Mindy4 APN 6 55,193,670 (GRCm39) missense probably damaging 1.00
IGL01721:Mindy4 APN 6 55,200,984 (GRCm39) missense probably damaging 1.00
IGL01965:Mindy4 APN 6 55,237,517 (GRCm39) splice site probably benign
IGL02214:Mindy4 APN 6 55,193,636 (GRCm39) missense possibly damaging 0.88
IGL03058:Mindy4 APN 6 55,285,183 (GRCm39) missense probably damaging 1.00
IGL03077:Mindy4 APN 6 55,286,315 (GRCm39) missense probably damaging 1.00
IGL03296:Mindy4 APN 6 55,274,738 (GRCm39) critical splice donor site probably null
R0383:Mindy4 UTSW 6 55,253,619 (GRCm39) missense probably benign 0.00
R0384:Mindy4 UTSW 6 55,193,669 (GRCm39) missense probably damaging 1.00
R0848:Mindy4 UTSW 6 55,295,271 (GRCm39) nonsense probably null
R1171:Mindy4 UTSW 6 55,232,601 (GRCm39) missense possibly damaging 0.75
R1210:Mindy4 UTSW 6 55,261,798 (GRCm39) missense possibly damaging 0.92
R1341:Mindy4 UTSW 6 55,232,601 (GRCm39) missense probably benign 0.00
R2030:Mindy4 UTSW 6 55,188,247 (GRCm39) missense probably damaging 1.00
R2127:Mindy4 UTSW 6 55,195,250 (GRCm39) missense probably benign 0.05
R2237:Mindy4 UTSW 6 55,278,055 (GRCm39) missense probably damaging 1.00
R2238:Mindy4 UTSW 6 55,278,055 (GRCm39) missense probably damaging 1.00
R2250:Mindy4 UTSW 6 55,277,934 (GRCm39) missense probably damaging 0.99
R2571:Mindy4 UTSW 6 55,261,770 (GRCm39) missense probably damaging 1.00
R2846:Mindy4 UTSW 6 55,255,085 (GRCm39) missense probably damaging 1.00
R3001:Mindy4 UTSW 6 55,195,349 (GRCm39) missense probably benign 0.21
R3002:Mindy4 UTSW 6 55,195,349 (GRCm39) missense probably benign 0.21
R3498:Mindy4 UTSW 6 55,193,510 (GRCm39) missense probably benign 0.01
R4167:Mindy4 UTSW 6 55,201,331 (GRCm39) missense possibly damaging 0.93
R4767:Mindy4 UTSW 6 55,237,550 (GRCm39) missense probably damaging 0.98
R4812:Mindy4 UTSW 6 55,256,088 (GRCm39) missense possibly damaging 0.64
R5109:Mindy4 UTSW 6 55,193,730 (GRCm39) splice site probably null
R5203:Mindy4 UTSW 6 55,232,646 (GRCm39) missense probably benign 0.00
R5221:Mindy4 UTSW 6 55,201,092 (GRCm39) missense probably benign
R5628:Mindy4 UTSW 6 55,237,579 (GRCm39) missense probably damaging 0.98
R6265:Mindy4 UTSW 6 55,278,049 (GRCm39) missense probably damaging 0.99
R6596:Mindy4 UTSW 6 55,201,001 (GRCm39) missense probably damaging 0.99
R7084:Mindy4 UTSW 6 55,255,220 (GRCm39) missense probably benign
R7350:Mindy4 UTSW 6 55,278,010 (GRCm39) missense probably damaging 0.97
R7535:Mindy4 UTSW 6 55,274,738 (GRCm39) critical splice donor site probably null
R7625:Mindy4 UTSW 6 55,253,598 (GRCm39) missense possibly damaging 0.95
R8052:Mindy4 UTSW 6 55,277,977 (GRCm39) missense probably damaging 0.99
R8727:Mindy4 UTSW 6 55,256,055 (GRCm39) unclassified probably benign
R8884:Mindy4 UTSW 6 55,255,223 (GRCm39) missense probably benign 0.00
R8886:Mindy4 UTSW 6 55,255,223 (GRCm39) missense probably benign 0.00
R8890:Mindy4 UTSW 6 55,255,223 (GRCm39) missense probably benign 0.00
R8892:Mindy4 UTSW 6 55,255,223 (GRCm39) missense probably benign 0.00
R8893:Mindy4 UTSW 6 55,255,223 (GRCm39) missense probably benign 0.00
R8894:Mindy4 UTSW 6 55,255,223 (GRCm39) missense probably benign 0.00
R8896:Mindy4 UTSW 6 55,255,223 (GRCm39) missense probably benign 0.00
R8932:Mindy4 UTSW 6 55,201,115 (GRCm39) missense probably benign
R9018:Mindy4 UTSW 6 55,278,072 (GRCm39) missense possibly damaging 0.91
R9045:Mindy4 UTSW 6 55,295,283 (GRCm39) missense probably benign 0.16
R9185:Mindy4 UTSW 6 55,295,261 (GRCm39) missense possibly damaging 0.88
X0065:Mindy4 UTSW 6 55,239,801 (GRCm39) missense probably damaging 0.99
Z1177:Mindy4 UTSW 6 55,201,326 (GRCm39) missense probably benign 0.10
Predicted Primers PCR Primer
(F):5'- GCAGTGTGATAGCATCCTTCAGGC -3'
(R):5'- AACCGAATCCAGGGACTAGGCTAC -3'

Sequencing Primer
(F):5'- TCCTTCAGGCCACCCCAG -3'
(R):5'- ATACACTGCTGAGTCAGCCTG -3'
Posted On 2013-07-11