Mutagenetix > Incidental Mutation

Incidental Mutation 'R7297:Susd2'

566748

Institutional Source

Beutler Lab

Gene Symbol

Susd2

Ensembl Gene

ENSMUSG00000006342

Gene Name

sushi domain containing 2

Synonyms

1200011D11Rik

MMRRC Submission

045401-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.109) question?

Stock #

R7297 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

75472540-75479842 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 75478402 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 58 (D58G)

Ref Sequence

ENSEMBL: ENSMUSP00000093197 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000001712] [ENSMUST00000077610] [ENSMUST00000095541]

AlphaFold

Q9DBX3

Predicted Effect

probably benign
Transcript: ENSMUST00000001712

SMART Domains

Protein: ENSMUSP00000001712
Gene: ENSMUSG00000020196

Domain	Start	End	E-Value	Type
low complexity region	61	71	N/A	INTRINSIC
TPR	90	123	4.15e-2	SMART
TPR	124	157	5.69e0	SMART
low complexity region	312	326	N/A	INTRINSIC
low complexity region	365	381	N/A	INTRINSIC
TPR	615	648	9.7e0	SMART
low complexity region	740	750	N/A	INTRINSIC
low complexity region	882	892	N/A	INTRINSIC
TPR	1055	1088	6.92e1	SMART
low complexity region	1327	1349	N/A	INTRINSIC
low complexity region	1714	1727	N/A	INTRINSIC
low complexity region	1778	1790	N/A	INTRINSIC
low complexity region	1791	1803	N/A	INTRINSIC
low complexity region	1810	1831	N/A	INTRINSIC
low complexity region	1941	1956	N/A	INTRINSIC
Pfam:MEF2_binding	2123	2157	5.7e-26	PFAM
low complexity region	2165	2183	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000077610

SMART Domains

Protein: ENSMUSP00000076802
Gene: ENSMUSG00000006342

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
AMOP	162	310	4.09e-82	SMART
VWD	313	489	1.9e-19	SMART
CCP	602	655	3.37e-17	SMART
transmembrane domain	663	685	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000095541
AA Change: D58G

PolyPhen 2 Score 0.188 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000093197
Gene: ENSMUSG00000006342
AA Change: D58G

Domain	Start	End	E-Value	Type
SO	25	64	4.77e-2	SMART
AMOP	282	430	4.09e-82	SMART
VWD	433	609	1.9e-19	SMART
CCP	722	775	3.37e-17	SMART
transmembrane domain	783	805	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca2	A	G	2: 25,332,088 (GRCm39)	D1400G	probably benign	Het
Abca6	C	T	11: 110,073,852 (GRCm39)		probably null	Het
Adh4	A	G	3: 138,134,901 (GRCm39)	I358M	possibly damaging	Het
Akap6	T	G	12: 52,934,147 (GRCm39)	D546E	probably benign	Het
Arap3	G	A	18: 38,106,616 (GRCm39)	A1409V	possibly damaging	Het
Arhgap22	C	T	14: 32,993,890 (GRCm39)	R68*	probably null	Het
Arhgef4	A	T	1: 34,846,273 (GRCm39)	D207V	probably damaging	Het
Asb15	A	G	6: 24,566,462 (GRCm39)	T472A	probably damaging	Het
Ascl1	A	T	10: 87,328,326 (GRCm39)	S209T	probably damaging	Het
Asxl1	T	C	2: 153,239,355 (GRCm39)	V382A	probably benign	Het
Atp11a	T	C	8: 12,856,774 (GRCm39)		probably null	Het
Calu	C	T	6: 29,356,554 (GRCm39)	R27*	probably null	Het
Cdh20	A	G	1: 104,898,598 (GRCm39)	T442A	probably benign	Het
Chrm3	T	A	13: 9,927,869 (GRCm39)	Q389L	probably benign	Het
Cntnap1	A	G	11: 101,079,460 (GRCm39)	T1233A	probably benign	Het
Cwc15	G	A	9: 14,421,525 (GRCm39)	C197Y	probably damaging	Het
D6Ertd527e	C	G	6: 87,088,506 (GRCm39)	T223S	unknown	Het
Dennd3	C	T	15: 73,429,459 (GRCm39)	T914I	probably damaging	Het
Dlx3	C	A	11: 95,011,276 (GRCm39)	Y43*	probably null	Het
Dnah17	A	T	11: 117,946,556 (GRCm39)		probably null	Het
Dnah17	A	G	11: 117,994,182 (GRCm39)	F1081S	probably damaging	Het
Dpp10	G	A	1: 123,281,157 (GRCm39)	Q631*	probably null	Het
Dsel	T	A	1: 111,789,506 (GRCm39)	D343V	probably damaging	Het
Efcab12	T	C	6: 115,787,997 (GRCm39)	D655G	possibly damaging	Het
Epha8	T	A	4: 136,673,224 (GRCm39)	I187L	probably damaging	Het
Exosc10	A	G	4: 148,664,834 (GRCm39)	K781E	probably damaging	Het
Exosc5	T	C	7: 25,365,751 (GRCm39)	L200P	probably benign	Het
Faiml	T	C	9: 99,111,666 (GRCm39)	E131G	probably damaging	Het
Gm5145	G	A	17: 20,790,993 (GRCm39)	V124I	probably benign	Het
Grm7	T	C	6: 110,622,974 (GRCm39)	V49A	probably benign	Het
Gtf2e1	T	C	16: 37,356,427 (GRCm39)	D35G	probably damaging	Het
Heatr1	C	T	13: 12,435,941 (GRCm39)	Q1160*	probably null	Het
Herc2	T	A	7: 55,786,406 (GRCm39)	C1584S	probably benign	Het
Hsd17b3	T	C	13: 64,224,165 (GRCm39)	I88V	probably damaging	Het
Hspa14	A	C	2: 3,499,179 (GRCm39)	L205R	possibly damaging	Het
Ifna11	A	C	4: 88,738,662 (GRCm39)	E156A	possibly damaging	Het
Krt87	T	C	15: 101,387,528 (GRCm39)	D170G	probably benign	Het
Mas1	T	C	17: 13,060,745 (GRCm39)	Y226C	probably damaging	Het
Micall1	T	C	15: 79,005,097 (GRCm39)	F190L	unknown	Het
Msi2	A	T	11: 88,370,864 (GRCm39)	L141Q	probably damaging	Het
Nfkbib	T	C	7: 28,465,768 (GRCm39)	D27G	probably benign	Het
Nlrp9b	A	G	7: 19,783,438 (GRCm39)	D927G	possibly damaging	Het
Nrg3	T	C	14: 38,092,896 (GRCm39)	D579G	probably benign	Het
Nutm1	G	A	2: 112,080,401 (GRCm39)	R505C	probably damaging	Het
Or8d1	G	A	9: 38,767,245 (GRCm39)	D296N	probably damaging	Het
Or8h6	A	T	2: 86,703,980 (GRCm39)	V29E	probably damaging	Het
Parp4	C	T	14: 56,885,138 (GRCm39)	P1406S	not run	Het
Pkib	A	T	10: 57,612,422 (GRCm39)	Q101L	possibly damaging	Het
Plat	C	T	8: 23,265,713 (GRCm39)	T252I	probably benign	Het
Ppm1d	A	T	11: 85,236,821 (GRCm39)	E533D	probably damaging	Het
Psd3	T	C	8: 68,573,686 (GRCm39)	K165R	probably damaging	Het
Psg29	T	A	7: 16,944,616 (GRCm39)	Y375*	probably null	Het
Pus7	A	T	5: 23,946,908 (GRCm39)	I644N	probably damaging	Het
Rbbp9	A	T	2: 144,385,722 (GRCm39)	M181K	probably benign	Het
Rell1	A	T	5: 64,093,418 (GRCm39)	N112K	possibly damaging	Het
Simc1	AATGCAGTCACCAAGAGATGTGATGCAGTCACCAAGAGATGTGATGCAGTCACCAAGAGATGTGATGCAGTCACCAAGAG	AATGCAGTCACCAAGAGATGTGATGCAGTCACCAAGAGATGTGATGCAGTCACCAAGAG	13: 54,673,048 (GRCm39)		probably benign	Het
Skint5	G	A	4: 113,400,131 (GRCm39)	T1184M	unknown	Het
Slc27a2	T	A	2: 126,420,866 (GRCm39)	D452E	probably damaging	Het
Slc44a4	T	A	17: 35,146,888 (GRCm39)	I489N	probably damaging	Het
Slfn14	T	A	11: 83,169,821 (GRCm39)	K608*	probably null	Het
Snx15	T	A	19: 6,170,537 (GRCm39)	I301F	probably damaging	Het
Sost	C	T	11: 101,854,929 (GRCm39)	G127R	probably damaging	Het
Stt3b	A	G	9: 115,106,025 (GRCm39)	I150T	probably damaging	Het
Tex46	T	G	4: 136,340,212 (GRCm39)	V99G	probably damaging	Het
Tgfbi	T	A	13: 56,779,926 (GRCm39)	F492I	possibly damaging	Het
Tmem132c	G	A	5: 127,437,281 (GRCm39)	A257T	probably benign	Het
Trim2	A	T	3: 84,117,540 (GRCm39)	I51K	probably damaging	Het
Tsn	A	T	1: 118,228,591 (GRCm39)	Y210*	probably null	Het
Umodl1	G	A	17: 31,227,639 (GRCm39)	R1324H	probably benign	Het
Utp3	G	C	5: 88,702,376 (GRCm39)		probably benign	Het
Vmn1r5	A	T	6: 56,963,204 (GRCm39)	N293I	possibly damaging	Het
Vmn2r124	A	T	17: 18,293,835 (GRCm39)	I641F	probably damaging	Het
Vmn2r84	T	C	10: 130,227,119 (GRCm39)	N240D	probably benign	Het
Wbp1l	A	G	19: 46,642,839 (GRCm39)	D264G	possibly damaging	Het

Other mutations in Susd2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00740:Susd2	APN	10	75,473,882 (GRCm39)	missense	probably benign	0.02
IGL00907:Susd2	APN	10	75,476,765 (GRCm39)	missense	probably benign	0.04
IGL01155:Susd2	APN	10	75,476,726 (GRCm39)	missense	possibly damaging	0.87
IGL01677:Susd2	APN	10	75,475,265 (GRCm39)	missense	possibly damaging	0.91
IGL02146:Susd2	APN	10	75,474,267 (GRCm39)	missense	possibly damaging	0.79
IGL02273:Susd2	APN	10	75,476,772 (GRCm39)	missense	possibly damaging	0.94
IGL02386:Susd2	APN	10	75,475,929 (GRCm39)	missense	probably damaging	0.97
IGL02475:Susd2	APN	10	75,473,333 (GRCm39)	critical splice donor site	probably null
IGL03218:Susd2	APN	10	75,478,459 (GRCm39)	missense	probably benign
PIT4418001:Susd2	UTSW	10	75,474,183 (GRCm39)	missense	probably benign	0.24
R0135:Susd2	UTSW	10	75,474,348 (GRCm39)	missense	probably damaging	1.00
R0396:Susd2	UTSW	10	75,475,745 (GRCm39)	missense	probably damaging	1.00
R0401:Susd2	UTSW	10	75,474,437 (GRCm39)	splice site	probably benign
R0608:Susd2	UTSW	10	75,474,069 (GRCm39)	missense	probably benign	0.45
R0636:Susd2	UTSW	10	75,475,184 (GRCm39)	missense	probably damaging	1.00
R1470:Susd2	UTSW	10	75,473,888 (GRCm39)	missense	probably damaging	1.00
R1470:Susd2	UTSW	10	75,473,888 (GRCm39)	missense	probably damaging	1.00
R1619:Susd2	UTSW	10	75,473,878 (GRCm39)	missense	possibly damaging	0.66
R1634:Susd2	UTSW	10	75,473,389 (GRCm39)	missense	probably benign	0.04
R1866:Susd2	UTSW	10	75,475,566 (GRCm39)	missense	probably damaging	0.98
R4354:Susd2	UTSW	10	75,475,562 (GRCm39)	missense	probably damaging	0.99
R4451:Susd2	UTSW	10	75,475,232 (GRCm39)	missense	probably damaging	1.00
R4721:Susd2	UTSW	10	75,473,964 (GRCm39)	missense	probably benign	0.00
R5546:Susd2	UTSW	10	75,478,052 (GRCm39)	missense	probably benign	0.01
R5768:Susd2	UTSW	10	75,473,853 (GRCm39)	missense	probably damaging	0.98
R5769:Susd2	UTSW	10	75,473,853 (GRCm39)	missense	probably damaging	0.98
R5770:Susd2	UTSW	10	75,473,853 (GRCm39)	missense	probably damaging	0.98
R5771:Susd2	UTSW	10	75,473,853 (GRCm39)	missense	probably damaging	0.98
R5960:Susd2	UTSW	10	75,475,770 (GRCm39)	missense	probably damaging	1.00
R6152:Susd2	UTSW	10	75,473,853 (GRCm39)	missense	probably damaging	0.98
R6153:Susd2	UTSW	10	75,473,853 (GRCm39)	missense	probably damaging	0.98
R6259:Susd2	UTSW	10	75,473,880 (GRCm39)	missense	probably damaging	1.00
R6291:Susd2	UTSW	10	75,473,408 (GRCm39)	missense	possibly damaging	0.61
R7106:Susd2	UTSW	10	75,473,887 (GRCm39)	missense	probably damaging	1.00
R7232:Susd2	UTSW	10	75,475,685 (GRCm39)	missense	probably damaging	1.00
R7326:Susd2	UTSW	10	75,478,399 (GRCm39)	missense	probably benign	0.00
R7905:Susd2	UTSW	10	75,475,491 (GRCm39)	nonsense	probably null
R8512:Susd2	UTSW	10	75,475,485 (GRCm39)	missense	probably benign	0.13
R8888:Susd2	UTSW	10	75,475,452 (GRCm39)	missense	possibly damaging	0.58
R8895:Susd2	UTSW	10	75,475,452 (GRCm39)	missense	possibly damaging	0.58
X0025:Susd2	UTSW	10	75,476,406 (GRCm39)	nonsense	probably null
Z1177:Susd2	UTSW	10	75,476,312 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- ACTCTATGCTTGGGATTGAGC -3'
(R):5'- TCCACCATGCCACTTGGTAG -3'

Sequencing Primer
(F):5'- CGTGTAGGAGCCCTAATGACCTAG -3'
(R):5'- ATGCCACTTGGTAGCCATAG -3'

Posted On

2019-06-26