Incidental Mutation 'R7298:Alg9'
| ID |
566807 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Alg9
|
| Ensembl Gene |
ENSMUSG00000032059 |
| Gene Name |
asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase) |
| Synonyms |
B430313H07Rik, 8230402H15Rik, Dibd1 |
| MMRRC Submission |
045402-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R7298 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
9 |
| Chromosomal Location |
50775019-50843542 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to T
at 50779061 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Alanine to Valine
at position 121
(A121V)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000034561
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000034561]
[ENSMUST00000159576]
[ENSMUST00000162073]
|
| AlphaFold |
Q8VDI9 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000034561
AA Change: A121V
PolyPhen 2
Score 0.967 (Sensitivity: 0.77; Specificity: 0.95)
|
| SMART Domains |
Protein: ENSMUSP00000034561
Gene: ENSMUSG00000032059
AA Change: A121V
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Glyco_transf_22
|
60 |
482 |
3.5e-127 |
PFAM |
|
low complexity region
|
598 |
611 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000159576
AA Change: A121V
PolyPhen 2
Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000123711
Gene: ENSMUSG00000032059
AA Change: A121V
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Glyco_transf_22
|
60 |
228 |
1e-43 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000162073
AA Change: A121V
PolyPhen 2
Score 0.260 (Sensitivity: 0.91; Specificity: 0.88)
|
| SMART Domains |
Protein: ENSMUSP00000125425
Gene: ENSMUSG00000032059
AA Change: A121V
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Glyco_transf_22
|
60 |
167 |
7.5e-31 |
PFAM |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.7%
- 20x: 99.2%
|
| Validation Efficiency |
96% (52/54) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an alpha-1,2-mannosyltransferase enzyme that functions in lipid-linked oligosaccharide assembly. Mutations in this gene result in congenital disorder of glycosylation type Il. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 52 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca14 |
A |
T |
7: 120,207,883 (GRCm38) |
T51S |
probably benign |
Het |
| Abcc1 |
A |
G |
16: 14,396,472 (GRCm38) |
D204G |
possibly damaging |
Het |
| Acaa1b |
C |
T |
9: 119,151,847 (GRCm38) |
E172K |
probably benign |
Het |
| Adamts5 |
G |
A |
16: 85,899,918 (GRCm38) |
T117I |
probably benign |
Het |
| Agmat |
A |
G |
4: 141,746,964 (GRCm38) |
E52G |
possibly damaging |
Het |
| Atf7ip2 |
T |
C |
16: 10,209,168 (GRCm38) |
I100T |
possibly damaging |
Het |
| Calm2 |
T |
C |
17: 87,442,737 (GRCm38) |
|
probably null |
Het |
| Cfap44 |
A |
T |
16: 44,481,412 (GRCm38) |
M1838L |
probably benign |
Het |
| Cym |
A |
G |
3: 107,219,693 (GRCm38) |
Y49H |
probably benign |
Het |
| Dchs1 |
G |
A |
7: 105,755,131 (GRCm38) |
R2735* |
probably null |
Het |
| Dnajc6 |
T |
C |
4: 101,606,611 (GRCm38) |
I187T |
probably benign |
Het |
| Fam151a |
G |
T |
4: 106,735,528 (GRCm38) |
R69L |
possibly damaging |
Het |
| Gm13089 |
C |
A |
4: 143,698,505 (GRCm38) |
D123Y |
probably benign |
Het |
| Gm14548 |
T |
A |
7: 3,895,265 (GRCm38) |
I353F |
possibly damaging |
Het |
| Gm4779 |
TCGGGGCCGGGGCCGGGGCCG |
TCGGGGCCGGGGCCGGGGCCGGGGCCG |
X: 101,794,171 (GRCm38) |
|
probably benign |
Het |
| Gm9922 |
C |
A |
14: 101,729,525 (GRCm38) |
G97V |
unknown |
Het |
| Hacl1 |
A |
T |
14: 31,616,486 (GRCm38) |
M378K |
probably damaging |
Het |
| Idh2 |
TCCCAGG |
T |
7: 80,098,331 (GRCm38) |
|
probably benign |
Het |
| Ighv1-82 |
A |
T |
12: 115,952,954 (GRCm38) |
I6N |
possibly damaging |
Het |
| Kctd19 |
A |
C |
8: 105,382,984 (GRCm38) |
V942G |
probably benign |
Het |
| Lce1l |
C |
T |
3: 92,850,176 (GRCm38) |
C125Y |
unknown |
Het |
| Mmp8 |
T |
C |
9: 7,560,448 (GRCm38) |
F42S |
probably damaging |
Het |
| Myom2 |
T |
C |
8: 15,098,411 (GRCm38) |
L529P |
probably damaging |
Het |
| Nectin3 |
A |
T |
16: 46,448,396 (GRCm38) |
Y548N |
probably damaging |
Het |
| Olfml3 |
T |
C |
3: 103,735,860 (GRCm38) |
K402E |
probably damaging |
Het |
| Olfr1255 |
T |
C |
2: 89,816,521 (GRCm38) |
F59S |
probably damaging |
Het |
| Olfr303 |
T |
A |
7: 86,394,923 (GRCm38) |
T192S |
probably damaging |
Het |
| Otof |
T |
A |
5: 30,388,270 (GRCm38) |
I514F |
probably damaging |
Het |
| Plch1 |
G |
T |
3: 63,716,037 (GRCm38) |
S603* |
probably null |
Het |
| Ppa1 |
T |
A |
10: 61,666,912 (GRCm38) |
D171E |
probably benign |
Het |
| Prss34 |
T |
C |
17: 25,299,763 (GRCm38) |
C240R |
probably damaging |
Het |
| Ptpre |
A |
G |
7: 135,683,287 (GRCm38) |
D714G |
probably damaging |
Het |
| Ranbp9 |
A |
G |
13: 43,480,460 (GRCm38) |
F157L |
probably benign |
Het |
| Rbbp6 |
A |
G |
7: 123,001,194 (GRCm38) |
K1475E |
unknown |
Het |
| Retnlg |
A |
G |
16: 48,872,874 (GRCm38) |
N5D |
probably benign |
Het |
| Rev1 |
T |
C |
1: 38,053,104 (GRCm38) |
T1245A |
probably damaging |
Het |
| Rngtt |
G |
T |
4: 33,362,927 (GRCm38) |
L360F |
probably damaging |
Het |
| Scrib |
A |
C |
15: 76,064,761 (GRCm38) |
V447G |
probably damaging |
Het |
| Slc22a6 |
C |
A |
19: 8,621,320 (GRCm38) |
A247E |
possibly damaging |
Het |
| Slc25a20 |
G |
A |
9: 108,662,144 (GRCm38) |
|
probably benign |
Het |
| Spag16 |
T |
A |
1: 69,919,426 (GRCm38) |
|
probably null |
Het |
| Stx3 |
C |
T |
19: 11,790,048 (GRCm38) |
W87* |
probably null |
Het |
| Syngap1 |
T |
A |
17: 26,962,987 (GRCm38) |
M1158K |
possibly damaging |
Het |
| Tmed9 |
C |
A |
13: 55,593,294 (GRCm38) |
H41N |
possibly damaging |
Het |
| Trav15-2-dv6-2 |
G |
A |
14: 53,649,785 (GRCm38) |
S54N |
probably benign |
Het |
| Tyk2 |
C |
T |
9: 21,108,860 (GRCm38) |
V1001I |
probably benign |
Het |
| Ugt8a |
A |
G |
3: 125,915,416 (GRCm38) |
V15A |
probably benign |
Het |
| Uhrf2 |
A |
G |
19: 30,088,549 (GRCm38) |
E661G |
probably benign |
Het |
| Vmn2r77 |
T |
A |
7: 86,800,771 (GRCm38) |
I75N |
probably benign |
Het |
| Zfp346 |
T |
G |
13: 55,130,603 (GRCm38) |
V258G |
probably damaging |
Het |
| Zfp72 |
T |
A |
13: 74,372,394 (GRCm38) |
K188N |
possibly damaging |
Het |
| Zgrf1 |
C |
A |
3: 127,583,650 (GRCm38) |
S848* |
probably null |
Het |
|
| Other mutations in Alg9 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01634:Alg9
|
APN |
9 |
50,775,377 (GRCm38) |
splice site |
probably null |
|
|
IGL02792:Alg9
|
APN |
9 |
50,842,748 (GRCm38) |
missense |
possibly damaging |
0.90 |
|
gum_drop
|
UTSW |
9 |
50,805,354 (GRCm38) |
missense |
possibly damaging |
0.90 |
|
FR4976:Alg9
|
UTSW |
9 |
50,775,431 (GRCm38) |
unclassified |
probably benign |
|
|
R1183:Alg9
|
UTSW |
9 |
50,789,533 (GRCm38) |
missense |
possibly damaging |
0.82 |
|
R1270:Alg9
|
UTSW |
9 |
50,787,572 (GRCm38) |
intron |
probably benign |
|
|
R1575:Alg9
|
UTSW |
9 |
50,775,502 (GRCm38) |
missense |
possibly damaging |
0.65 |
|
R1773:Alg9
|
UTSW |
9 |
50,779,096 (GRCm38) |
missense |
probably benign |
0.30 |
|
R1837:Alg9
|
UTSW |
9 |
50,806,315 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2011:Alg9
|
UTSW |
9 |
50,788,200 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4324:Alg9
|
UTSW |
9 |
50,805,343 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4514:Alg9
|
UTSW |
9 |
50,805,354 (GRCm38) |
missense |
possibly damaging |
0.90 |
|
R4544:Alg9
|
UTSW |
9 |
50,805,354 (GRCm38) |
missense |
possibly damaging |
0.90 |
|
R4546:Alg9
|
UTSW |
9 |
50,805,354 (GRCm38) |
missense |
possibly damaging |
0.90 |
|
R4996:Alg9
|
UTSW |
9 |
50,808,705 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5007:Alg9
|
UTSW |
9 |
50,788,224 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5053:Alg9
|
UTSW |
9 |
50,788,172 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5308:Alg9
|
UTSW |
9 |
50,822,711 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R6803:Alg9
|
UTSW |
9 |
50,789,560 (GRCm38) |
missense |
probably benign |
0.37 |
|
R6994:Alg9
|
UTSW |
9 |
50,792,122 (GRCm38) |
nonsense |
probably null |
|
|
R6998:Alg9
|
UTSW |
9 |
50,789,621 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R7480:Alg9
|
UTSW |
9 |
50,822,628 (GRCm38) |
missense |
probably benign |
0.06 |
|
R7561:Alg9
|
UTSW |
9 |
50,842,774 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R7578:Alg9
|
UTSW |
9 |
50,789,535 (GRCm38) |
missense |
probably benign |
|
|
R7721:Alg9
|
UTSW |
9 |
50,776,642 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R7829:Alg9
|
UTSW |
9 |
50,788,171 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7847:Alg9
|
UTSW |
9 |
50,789,605 (GRCm38) |
missense |
possibly damaging |
0.62 |
|
R7878:Alg9
|
UTSW |
9 |
50,842,783 (GRCm38) |
missense |
probably benign |
0.00 |
|
R8113:Alg9
|
UTSW |
9 |
50,808,780 (GRCm38) |
nonsense |
probably null |
|
|
R8257:Alg9
|
UTSW |
9 |
50,779,087 (GRCm38) |
missense |
possibly damaging |
0.62 |
|
R9214:Alg9
|
UTSW |
9 |
50,806,245 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9497:Alg9
|
UTSW |
9 |
50,800,136 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R9511:Alg9
|
UTSW |
9 |
50,806,225 (GRCm38) |
missense |
probably damaging |
1.00 |
|
RF003:Alg9
|
UTSW |
9 |
50,775,427 (GRCm38) |
unclassified |
probably benign |
|
|
RF006:Alg9
|
UTSW |
9 |
50,775,417 (GRCm38) |
unclassified |
probably benign |
|
|
RF058:Alg9
|
UTSW |
9 |
50,775,427 (GRCm38) |
unclassified |
probably benign |
|
|
Z1177:Alg9
|
UTSW |
9 |
50,788,173 (GRCm38) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- GTCTCTAATTTCAACACAGGCTG -3'
(R):5'- TTTCAAAGAGGAGGCCAGACAC -3'
Sequencing Primer
(F):5'- ATTTCAACACAGGCTGTTCAC -3'
(R):5'- GTCTGCAGAACATGGCAAGACTC -3'
|
| Posted On |
2019-06-26 |
Incidental Mutation