Incidental Mutation 'R7303:Cad'
ID 567087
Institutional Source Beutler Lab
Gene Symbol Cad
Ensembl Gene ENSMUSG00000013629
Gene Name carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
Synonyms 2410008J01Rik
MMRRC Submission 045364-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.968) question?
Stock # R7303 (G1)
Quality Score 225.009
Status Not validated
Chromosome 5
Chromosomal Location 31212124-31235823 bp(+) (GRCm39)
Type of Mutation critical splice donor site (2 bp from exon)
DNA Base Change (assembly) T to C at 31217557 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000013773 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000013773] [ENSMUST00000200953] [ENSMUST00000201182] [ENSMUST00000201838] [ENSMUST00000202795]
AlphaFold B2RQC6
Predicted Effect probably null
Transcript: ENSMUST00000013773
SMART Domains Protein: ENSMUSP00000013773
Gene: ENSMUSG00000013629

DomainStartEndE-ValueType
CPSase_sm_chain 1 139 8.81e-80 SMART
Pfam:GATase 179 356 4.7e-47 PFAM
low complexity region 397 407 N/A INTRINSIC
Pfam:ATP-grasp_4 511 692 1.2e-15 PFAM
Pfam:CPSase_L_D2 514 718 1.8e-85 PFAM
Pfam:ATP-grasp 522 690 1.5e-9 PFAM
Pfam:Dala_Dala_lig_C 527 687 2.2e-10 PFAM
CPSase_L_D3 798 921 9.7e-59 SMART
Pfam:ATP-grasp_4 1044 1223 1.8e-23 PFAM
Pfam:CPSase_L_D2 1047 1250 3.1e-28 PFAM
Pfam:Dala_Dala_lig_C 1054 1242 2.3e-7 PFAM
Pfam:ATP-grasp 1055 1222 2.1e-12 PFAM
MGS 1327 1428 1.35e-7 SMART
Pfam:Amidohydro_1 1462 1730 7.4e-12 PFAM
low complexity region 1820 1839 N/A INTRINSIC
low complexity region 1864 1880 N/A INTRINSIC
Pfam:OTCace_N 1924 2065 1.9e-44 PFAM
Pfam:OTCace 2071 2221 7.6e-37 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000200953
SMART Domains Protein: ENSMUSP00000144307
Gene: ENSMUSG00000013629

DomainStartEndE-ValueType
CPSase_sm_chain 1 139 8.81e-80 SMART
Pfam:GATase 179 356 4.5e-47 PFAM
low complexity region 397 407 N/A INTRINSIC
Pfam:CPSase_L_D2 514 616 1.5e-34 PFAM
Pfam:Dala_Dala_lig_C 527 625 2.4e-7 PFAM
Pfam:CPSase_L_D2 614 655 4.9e-15 PFAM
CPSase_L_D3 735 858 9.7e-59 SMART
Pfam:ATP-grasp_4 981 1160 1.7e-23 PFAM
Pfam:CPSase_L_D2 984 1187 3e-28 PFAM
Pfam:Dala_Dala_lig_C 991 1179 2.3e-7 PFAM
Pfam:ATP-grasp 992 1159 2.1e-12 PFAM
MGS 1264 1365 1.35e-7 SMART
Pfam:Amidohydro_1 1399 1667 7.1e-12 PFAM
low complexity region 1757 1776 N/A INTRINSIC
low complexity region 1801 1817 N/A INTRINSIC
Pfam:OTCace_N 1861 2002 1.8e-44 PFAM
Pfam:OTCace 2008 2158 7.3e-37 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000201182
SMART Domains Protein: ENSMUSP00000144684
Gene: ENSMUSG00000013629

DomainStartEndE-ValueType
CPSase_sm_chain 1 139 8.81e-80 SMART
Pfam:GATase 179 356 4.5e-47 PFAM
low complexity region 397 407 N/A INTRINSIC
Pfam:ATP-grasp_4 511 692 1.1e-15 PFAM
Pfam:CPSase_L_D2 514 718 1.7e-85 PFAM
Pfam:ATP-grasp 522 690 1.4e-9 PFAM
Pfam:Dala_Dala_lig_C 527 687 2.1e-10 PFAM
CPSase_L_D3 798 921 9.7e-59 SMART
Pfam:ATP-grasp_4 1044 1223 1.7e-23 PFAM
Pfam:CPSase_L_D2 1047 1250 3e-28 PFAM
Pfam:Dala_Dala_lig_C 1054 1242 2.3e-7 PFAM
Pfam:ATP-grasp 1055 1222 2.1e-12 PFAM
MGS 1327 1428 1.35e-7 SMART
Pfam:Amidohydro_1 1462 1730 7.1e-12 PFAM
low complexity region 1820 1839 N/A INTRINSIC
low complexity region 1864 1880 N/A INTRINSIC
Pfam:OTCace_N 1949 1994 1.4e-11 PFAM
Pfam:OTCace 2000 2150 7.3e-37 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000201838
SMART Domains Protein: ENSMUSP00000144127
Gene: ENSMUSG00000013629

DomainStartEndE-ValueType
CPSase_sm_chain 1 139 8.81e-80 SMART
Pfam:GATase 179 356 6.3e-48 PFAM
low complexity region 397 407 N/A INTRINSIC
Pfam:ATP-grasp_4 511 692 1.9e-16 PFAM
Pfam:CPSase_L_D2 514 718 3.7e-86 PFAM
Pfam:ATP-grasp 522 690 2.5e-10 PFAM
Pfam:Dala_Dala_lig_C 526 687 4.2e-11 PFAM
CPSase_L_D3 798 921 9.7e-59 SMART
SCOP:d1a9xa3 935 964 1e-7 SMART
Predicted Effect probably null
Transcript: ENSMUST00000202795
SMART Domains Protein: ENSMUSP00000144009
Gene: ENSMUSG00000013629

DomainStartEndE-ValueType
CPSase_sm_chain 1 139 8.81e-80 SMART
Pfam:GATase 179 356 1.9e-47 PFAM
low complexity region 397 407 N/A INTRINSIC
Pfam:ATP-grasp_4 511 692 5.9e-16 PFAM
Pfam:CPSase_L_D2 514 718 1.2e-85 PFAM
Pfam:ATP-grasp 522 690 7.3e-10 PFAM
Pfam:Dala_Dala_lig_C 527 687 1.3e-10 PFAM
CPSase_L_D3 798 921 9.7e-59 SMART
Pfam:ATP-grasp_4 1044 1223 8.9e-24 PFAM
Pfam:CPSase_L_D2 1047 1250 2.1e-28 PFAM
Pfam:Dala_Dala_lig_C 1054 1242 1.3e-7 PFAM
Pfam:ATP-grasp 1055 1222 1.1e-12 PFAM
MGS 1327 1428 1.35e-7 SMART
Pfam:Amidohydro_1 1462 1730 2.5e-11 PFAM
low complexity region 1820 1839 N/A INTRINSIC
low complexity region 1864 1880 N/A INTRINSIC
Pfam:OTCace_N 1970 2004 4.6e-11 PFAM
Pfam:OTCace 2010 2160 9.9e-37 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.1%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The de novo synthesis of pyrimidine nucleotides is required for mammalian cells to proliferate. This gene encodes a trifunctional protein which is associated with the enzymatic activities of the first 3 enzymes in the 6-step pathway of pyrimidine biosynthesis: carbamoylphosphate synthetase (CPS II), aspartate transcarbamoylase, and dihydroorotase. This protein is regulated by the mitogen-activated protein kinase (MAPK) cascade, which indicates a direct link between activation of the MAPK cascade and de novo biosynthesis of pyrimidine nucleotides. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Apr 2015]
Allele List at MGI
Other mutations in this stock
Total: 63 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca3 T G 17: 24,617,495 (GRCm39) L1064R possibly damaging Het
Abca7 A T 10: 79,850,822 (GRCm39) D2051V probably benign Het
Abcb5 T A 12: 118,875,295 (GRCm39) I626F probably damaging Het
Abcg5 A G 17: 84,977,774 (GRCm39) S333P probably damaging Het
Abl2 T C 1: 156,468,820 (GRCm39) S695P probably benign Het
Aen C T 7: 78,552,204 (GRCm39) P55S possibly damaging Het
Afg3l1 G T 8: 124,228,008 (GRCm39) A598S probably damaging Het
Aldh16a1 A T 7: 44,797,328 (GRCm39) L160Q probably damaging Het
Ang A T 14: 51,338,973 (GRCm39) H38L probably benign Het
Ankar A T 1: 72,698,192 (GRCm39) I954N probably benign Het
Aox1 A T 1: 58,373,924 (GRCm39) K862* probably null Het
Brme1 G C 8: 84,887,862 (GRCm39) G71A probably benign Het
Cc2d2b A T 19: 40,797,438 (GRCm39) Y740F unknown Het
Ccdc182 T C 11: 88,185,042 (GRCm39) Y41H probably benign Het
Chd9 A G 8: 91,778,532 (GRCm39) R2848G unknown Het
Chrna6 A T 8: 27,897,019 (GRCm39) L286* probably null Het
Cimap1d G A 10: 79,478,525 (GRCm39) P80S probably benign Het
Cracr2b A G 7: 141,043,115 (GRCm39) probably benign Het
Fam184b C T 5: 45,699,568 (GRCm39) probably null Het
Flnc T C 6: 29,460,849 (GRCm39) S2647P probably benign Het
Ftsj3 T C 11: 106,145,506 (GRCm39) D76G probably damaging Het
Fxyd1 T A 7: 30,753,743 (GRCm39) M17L probably benign Het
Golim4 G A 3: 75,785,360 (GRCm39) S677L probably damaging Het
Gpr149 A G 3: 62,502,491 (GRCm39) V455A possibly damaging Het
H2-Q1 C A 17: 35,540,312 (GRCm39) S132R probably benign Het
H2-Q7 A G 17: 35,659,037 (GRCm39) I163V probably benign Het
Herc1 A T 9: 66,358,098 (GRCm39) D2393V possibly damaging Het
Hmgb2 A G 8: 57,965,762 (GRCm39) K44E possibly damaging Het
Itgad A G 7: 127,789,351 (GRCm39) D605G probably benign Het
Kbtbd12 G T 6: 88,591,094 (GRCm39) F16L unknown Het
Klhl23 T C 2: 69,655,045 (GRCm39) I305T probably benign Het
Lrguk A T 6: 34,006,411 (GRCm39) N7I probably benign Het
Lrp5 A G 19: 3,641,774 (GRCm39) L1396P probably damaging Het
Mapkapk5 T C 5: 121,678,637 (GRCm39) E13G probably benign Het
Mark3 T C 12: 111,621,970 (GRCm39) V704A probably damaging Het
Mast2 A G 4: 116,165,508 (GRCm39) S1303P possibly damaging Het
Mcm2 T C 6: 88,864,928 (GRCm39) D516G probably damaging Het
Mon2 A T 10: 122,874,364 (GRCm39) probably null Het
Mrc2 T A 11: 105,216,629 (GRCm39) N139K probably damaging Het
Myh14 C T 7: 44,261,125 (GRCm39) E1789K probably damaging Het
Myh7b T A 2: 155,460,660 (GRCm39) L271Q probably damaging Het
Oog2 A T 4: 143,921,912 (GRCm39) H274L probably benign Het
Oosp1 A C 19: 11,645,774 (GRCm39) S121R probably benign Het
Or13a28 T C 7: 140,218,267 (GRCm39) S218P probably damaging Het
Or8k3b A G 2: 86,521,166 (GRCm39) V51A probably benign Het
Pepd T C 7: 34,721,197 (GRCm39) probably null Het
Pik3c2a A C 7: 116,005,178 (GRCm39) S363R probably benign Het
Polr2b T C 5: 77,468,868 (GRCm39) Y215H probably benign Het
Ppcdc A T 9: 57,321,958 (GRCm39) V194E probably benign Het
Rabgap1l A C 1: 160,509,667 (GRCm39) I470S probably benign Het
Scgb1b3 G A 7: 31,075,383 (GRCm39) A78T probably benign Het
Slc9a5 T A 8: 106,083,345 (GRCm39) L368Q probably damaging Het
Spef2 T A 15: 9,647,576 (GRCm39) I944F possibly damaging Het
Syne1 T A 10: 5,206,805 (GRCm39) H3461L probably benign Het
Tas2r134 A G 2: 51,518,145 (GRCm39) Y208C probably benign Het
Tasor A G 14: 27,193,809 (GRCm39) E1003G probably damaging Het
Tm9sf3 G A 19: 41,227,198 (GRCm39) S291F probably damaging Het
Tra2a G A 6: 49,227,921 (GRCm39) T69I unknown Het
Ube2q1 T A 3: 89,683,898 (GRCm39) L171Q possibly damaging Het
Ufd1 A G 16: 18,636,715 (GRCm39) T78A probably damaging Het
Vmn1r13 T C 6: 57,187,587 (GRCm39) S249P probably damaging Het
Wdr91 G A 6: 34,861,258 (GRCm39) S648L probably benign Het
Zfp51 T A 17: 21,684,058 (GRCm39) N224K probably benign Het
Other mutations in Cad
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00821:Cad APN 5 31,218,828 (GRCm39) missense probably damaging 1.00
IGL00908:Cad APN 5 31,216,398 (GRCm39) missense possibly damaging 0.93
IGL01068:Cad APN 5 31,219,114 (GRCm39) splice site probably benign
IGL01638:Cad APN 5 31,224,958 (GRCm39) missense probably damaging 1.00
IGL02483:Cad APN 5 31,218,170 (GRCm39) critical splice acceptor site probably null
IGL02499:Cad APN 5 31,226,948 (GRCm39) missense probably damaging 1.00
IGL02691:Cad APN 5 31,212,638 (GRCm39) missense probably damaging 1.00
IGL03002:Cad APN 5 31,212,330 (GRCm39) missense probably benign 0.00
PIT4696001:Cad UTSW 5 31,229,438 (GRCm39) missense probably damaging 0.99
R0212:Cad UTSW 5 31,235,454 (GRCm39) missense probably damaging 1.00
R0317:Cad UTSW 5 31,229,665 (GRCm39) missense probably benign 0.01
R0335:Cad UTSW 5 31,231,329 (GRCm39) unclassified probably benign
R0401:Cad UTSW 5 31,231,330 (GRCm39) unclassified probably benign
R0445:Cad UTSW 5 31,230,053 (GRCm39) missense probably benign 0.08
R0494:Cad UTSW 5 31,234,856 (GRCm39) unclassified probably benign
R0532:Cad UTSW 5 31,219,531 (GRCm39) splice site probably benign
R0539:Cad UTSW 5 31,232,801 (GRCm39) splice site probably benign
R0578:Cad UTSW 5 31,216,120 (GRCm39) missense probably benign 0.01
R0590:Cad UTSW 5 31,219,575 (GRCm39) missense probably damaging 1.00
R0638:Cad UTSW 5 31,235,032 (GRCm39) missense probably damaging 0.98
R0831:Cad UTSW 5 31,224,944 (GRCm39) missense probably damaging 1.00
R1329:Cad UTSW 5 31,216,926 (GRCm39) missense probably damaging 1.00
R1513:Cad UTSW 5 31,226,106 (GRCm39) missense probably damaging 1.00
R1531:Cad UTSW 5 31,233,563 (GRCm39) missense probably benign 0.14
R1763:Cad UTSW 5 31,218,295 (GRCm39) missense probably damaging 1.00
R1785:Cad UTSW 5 31,215,416 (GRCm39) missense probably damaging 1.00
R1786:Cad UTSW 5 31,215,416 (GRCm39) missense probably damaging 1.00
R2131:Cad UTSW 5 31,215,416 (GRCm39) missense probably damaging 1.00
R2165:Cad UTSW 5 31,219,564 (GRCm39) missense probably damaging 1.00
R3103:Cad UTSW 5 31,219,018 (GRCm39) missense possibly damaging 0.95
R3113:Cad UTSW 5 31,231,481 (GRCm39) missense possibly damaging 0.50
R3762:Cad UTSW 5 31,232,890 (GRCm39) splice site probably null
R3847:Cad UTSW 5 31,218,994 (GRCm39) missense probably damaging 1.00
R3898:Cad UTSW 5 31,231,366 (GRCm39) missense probably benign 0.06
R3943:Cad UTSW 5 31,229,729 (GRCm39) critical splice donor site probably null
R4213:Cad UTSW 5 31,229,688 (GRCm39) missense probably benign 0.01
R4458:Cad UTSW 5 31,218,570 (GRCm39) missense probably damaging 1.00
R4562:Cad UTSW 5 31,215,477 (GRCm39) missense possibly damaging 0.82
R4629:Cad UTSW 5 31,227,639 (GRCm39) missense probably damaging 1.00
R4717:Cad UTSW 5 31,224,030 (GRCm39) critical splice acceptor site probably null
R4811:Cad UTSW 5 31,232,034 (GRCm39) missense probably benign 0.02
R5044:Cad UTSW 5 31,212,365 (GRCm39) missense probably benign 0.00
R5630:Cad UTSW 5 31,217,917 (GRCm39) missense probably damaging 1.00
R5660:Cad UTSW 5 31,234,191 (GRCm39) missense probably damaging 1.00
R6008:Cad UTSW 5 31,226,456 (GRCm39) missense probably damaging 1.00
R6029:Cad UTSW 5 31,212,327 (GRCm39) missense possibly damaging 0.65
R6073:Cad UTSW 5 31,219,906 (GRCm39) missense possibly damaging 0.84
R6240:Cad UTSW 5 31,230,322 (GRCm39) missense probably benign 0.00
R6260:Cad UTSW 5 31,224,144 (GRCm39) missense probably null
R7145:Cad UTSW 5 31,224,956 (GRCm39) missense possibly damaging 0.89
R7352:Cad UTSW 5 31,215,422 (GRCm39) missense probably damaging 1.00
R7382:Cad UTSW 5 31,233,173 (GRCm39) missense probably benign
R7387:Cad UTSW 5 31,219,284 (GRCm39) missense probably damaging 1.00
R7455:Cad UTSW 5 31,231,506 (GRCm39) missense probably damaging 0.99
R7596:Cad UTSW 5 31,226,392 (GRCm39) missense probably benign
R7627:Cad UTSW 5 31,217,508 (GRCm39) missense probably damaging 1.00
R7898:Cad UTSW 5 31,218,829 (GRCm39) missense probably damaging 1.00
R8022:Cad UTSW 5 31,226,150 (GRCm39) missense probably damaging 1.00
R8115:Cad UTSW 5 31,218,271 (GRCm39) missense possibly damaging 0.82
R8511:Cad UTSW 5 31,233,165 (GRCm39) missense probably benign 0.00
R8523:Cad UTSW 5 31,215,450 (GRCm39) missense probably damaging 0.98
R8690:Cad UTSW 5 31,232,500 (GRCm39) missense possibly damaging 0.58
R8697:Cad UTSW 5 31,231,945 (GRCm39) missense probably benign 0.06
R8698:Cad UTSW 5 31,234,819 (GRCm39) missense probably benign
R8699:Cad UTSW 5 31,233,605 (GRCm39) missense possibly damaging 0.80
R8803:Cad UTSW 5 31,226,908 (GRCm39) missense probably damaging 1.00
R9262:Cad UTSW 5 31,225,009 (GRCm39) missense probably null
R9272:Cad UTSW 5 31,218,576 (GRCm39) missense possibly damaging 0.91
R9287:Cad UTSW 5 31,230,000 (GRCm39) missense possibly damaging 0.67
R9314:Cad UTSW 5 31,234,988 (GRCm39) missense probably damaging 1.00
R9609:Cad UTSW 5 31,228,018 (GRCm39) critical splice donor site probably null
R9665:Cad UTSW 5 31,229,703 (GRCm39) missense probably benign 0.28
RF001:Cad UTSW 5 31,217,556 (GRCm39) critical splice donor site probably benign
RF012:Cad UTSW 5 31,217,556 (GRCm39) critical splice donor site probably benign
X0021:Cad UTSW 5 31,225,475 (GRCm39) missense probably null 1.00
X0022:Cad UTSW 5 31,229,661 (GRCm39) missense probably damaging 0.99
Z1177:Cad UTSW 5 31,232,472 (GRCm39) missense probably benign 0.25
Z1177:Cad UTSW 5 31,225,765 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGCATTGAACCTCAGTCCTCTC -3'
(R):5'- ACTAGACCCTCACTTCCAGG -3'

Sequencing Primer
(F):5'- TCTGAGGCCACTGTAGCTCTG -3'
(R):5'- TTCCAGGCAAGCACAGAG -3'
Posted On 2019-06-26