Mutagenetix > Incidental Mutation

Incidental Mutation 'R7307:Cramp1l'

567349

Institutional Source

Beutler Lab

Gene Symbol

Cramp1l

Ensembl Gene

ENSMUSG00000038002

Gene Name

cramped chromatin regulator homolog 1

Synonyms

5830477H08Rik, Tce4

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7307 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

24961228-25015230 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 24974745 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 920 (N920K)

Ref Sequence

ENSEMBL: ENSMUSP00000073060 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000073337]

AlphaFold

Q6PG95

Predicted Effect

possibly damaging
Transcript: ENSMUST00000073337
AA Change: N920K

PolyPhen 2 Score 0.942 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000073060
Gene: ENSMUSG00000038002
AA Change: N920K

Domain	Start	End	E-Value	Type
low complexity region	11	20	N/A	INTRINSIC
low complexity region	29	43	N/A	INTRINSIC
low complexity region	51	64	N/A	INTRINSIC
low complexity region	100	126	N/A	INTRINSIC
low complexity region	134	147	N/A	INTRINSIC
SANT	159	219	3.68e-3	SMART
low complexity region	479	503	N/A	INTRINSIC
low complexity region	548	562	N/A	INTRINSIC
low complexity region	792	803	N/A	INTRINSIC
low complexity region	833	845	N/A	INTRINSIC
low complexity region	889	903	N/A	INTRINSIC
low complexity region	1069	1086	N/A	INTRINSIC
low complexity region	1113	1124	N/A	INTRINSIC
low complexity region	1141	1156	N/A	INTRINSIC
low complexity region	1171	1185	N/A	INTRINSIC

Meta Mutation Damage Score

0.1712

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (75/75)

MGI Phenotype

PHENOTYPE: Mice homozygous for a transgenic gene disruption exhibit cleft palate. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610318N02Rik	G	A	16: 17,118,395	P155L	probably benign	Het
Adamts12	G	T	15: 11,217,813	L285F	probably damaging	Het
Ankrd6	A	T	4: 32,816,949	Y393N	possibly damaging	Het
Arhgap45	A	G	10: 80,029,182	Q993R	probably benign	Het
Arhgef33	G	C	17: 80,347,120		probably null	Het
B4galnt3	T	C	6: 120,215,431	D448G	probably benign	Het
Capn1	C	G	19: 5,993,908	E564D	possibly damaging	Het
Ccdc85a	A	G	11: 28,399,384	S474P	probably benign	Het
Cdk12	T	A	11: 98,249,800	L1289*	probably null	Het
Cubn	C	T	2: 13,340,332	S2091N	probably damaging	Het
Ddx1	A	T	12: 13,223,959	I581N	probably damaging	Het
Dnm2	A	T	9: 21,485,687	N487Y	probably damaging	Het
Enc1	A	C	13: 97,245,093	N37T	probably damaging	Het
Ephb3	T	G	16: 21,222,226	I932S	probably benign	Het
Frk	T	A	10: 34,591,938	M316K	probably damaging	Het
Gdap2	C	T	3: 100,202,033	R25C	unknown	Het
Gm10436	A	C	12: 88,181,749	C32W	probably damaging	Het
Gpat2	T	A	2: 127,434,890	D671E	probably damaging	Het
Gpr179	C	T	11: 97,338,846	E828K	probably benign	Het
Greb1l	T	C	18: 10,538,142	Y1052H	probably damaging	Het
Gtf2f1	C	T	17: 57,007,833	S69N	probably damaging	Het
Hid1	A	C	11: 115,348,482	I785S	probably damaging	Het
Hmcn2	T	C	2: 31,343,081	I214T	probably damaging	Het
Hsd3b5	G	T	3: 98,619,769	F120L	probably damaging	Het
Kif16b	C	T	2: 142,712,931	R649Q	probably benign	Het
Kif17	A	T	4: 138,262,643	E47D	probably benign	Het
Kmt2b	T	C	7: 30,580,471	H1368R	probably damaging	Het
Kmt2d	A	T	15: 98,849,418	S3342T	unknown	Het
Krt82	A	G	15: 101,542,907	C356R	probably damaging	Het
Lrit2	A	G	14: 37,072,199	K407E	probably benign	Het
Malt1	T	A	18: 65,451,569	H325Q	possibly damaging	Het
Mccc2	T	G	13: 99,988,600	D187A	possibly damaging	Het
Mgll	T	A	6: 88,814,121		probably null	Het
Mindy2	T	G	9: 70,610,959	E449A	possibly damaging	Het
Muc5b	G	A	7: 141,842,294	V96M	unknown	Het
Nlrp4e	A	G	7: 23,321,528	E480G	probably benign	Het
Nup98	A	G	7: 102,134,795	I1093T	probably benign	Het
Olfr1288	A	T	2: 111,478,760		probably benign	Het
Olfr243	G	T	7: 103,716,966	R124L	probably damaging	Het
Olfr350	G	A	2: 36,850,125	M26I	probably benign	Het
Olfr541	G	A	7: 140,705,147	V299I	probably benign	Het
Pcdhb6	A	T	18: 37,335,478	H484L	probably benign	Het
Phldb1	T	C	9: 44,694,047	T604A	possibly damaging	Het
Pitpnm3	G	T	11: 72,070,964	A275D	probably damaging	Het
Polr2a	A	T	11: 69,747,292		probably null	Het
Polr3a	A	G	14: 24,459,987	C960R	probably benign	Het
Pou6f2	G	A	13: 18,239,713	A159V		Het
Pramef6	A	C	4: 143,896,775	Y276*	probably null	Het
Psmc4	A	G	7: 28,042,660	V303A	probably benign	Het
Ptdss2	A	G	7: 141,151,732	N151S	possibly damaging	Het
Ptprk	T	A	10: 28,589,008	Y1295*	probably null	Het
Rbm19	A	G	5: 120,186,218	K881E	possibly damaging	Het
Rcan2	T	A	17: 44,021,102	Y183*	probably null	Het
Rnd1	T	C	15: 98,670,799	E166G	probably damaging	Het
Rnf113a2	T	A	12: 84,418,179	C282S	probably damaging	Het
S100b	G	A	10: 76,257,092	G20R	probably benign	Het
Sae1	G	T	7: 16,368,544	Y168*	probably null	Het
Samd9l	C	A	6: 3,372,600	G1554*	probably null	Het
Samhd1	T	C	2: 157,135,020	S55G	probably benign	Het
Sgsm1	T	C	5: 113,273,646	D525G	probably benign	Het
Slc28a3	A	T	13: 58,563,172	M512K	probably damaging	Het
Slc9b2	T	A	3: 135,318,390	N67K	probably benign	Het
Smarca4	T	A	9: 21,638,800	I402N	probably damaging	Het
St7l	T	C	3: 104,889,353	F261L	probably benign	Het
Syde2	T	A	3: 146,015,798	V1140D	probably damaging	Het
Syt6	T	A	3: 103,587,472	I251N	probably damaging	Het
Taok2	T	C	7: 126,866,818	E916G	probably damaging	Het
Tecta	A	G	9: 42,377,992	S426P	probably damaging	Het
Thra	T	C	11: 98,764,308	I338T	probably damaging	Het
Trub1	A	T	19: 57,472,703	Y137F	probably damaging	Het
Vps13b	T	C	15: 35,841,545	F2574L	probably benign	Het
Ythdf3	T	C	3: 16,183,500	S2P	possibly damaging	Het
Zc3h13	T	A	14: 75,330,541	D1091E	probably damaging	Het
Zdhhc6	A	G	19: 55,313,250	Y100H	probably damaging	Het

Other mutations in Cramp1l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00566:Cramp1l	APN	17	24983951	missense	probably benign	0.11
IGL01360:Cramp1l	APN	17	24997573	missense	probably damaging	1.00
IGL01966:Cramp1l	APN	17	24982943	missense	probably benign	0.01
IGL02211:Cramp1l	APN	17	24977636	missense	possibly damaging	0.94
IGL02474:Cramp1l	APN	17	24985050	missense	probably damaging	0.98
IGL02798:Cramp1l	APN	17	24968920	splice site	probably benign
IGL03340:Cramp1l	APN	17	24973542	missense	probably damaging	1.00
R0106:Cramp1l	UTSW	17	24972376	missense	probably benign	0.30
R1054:Cramp1l	UTSW	17	24983177	missense	probably damaging	1.00
R1220:Cramp1l	UTSW	17	24982237	missense	probably damaging	1.00
R1341:Cramp1l	UTSW	17	24977540	missense	probably damaging	1.00
R1491:Cramp1l	UTSW	17	24972349	missense	probably benign	0.17
R1610:Cramp1l	UTSW	17	24983951	missense	probably benign	0.11
R1649:Cramp1l	UTSW	17	24983243	missense	probably damaging	1.00
R1795:Cramp1l	UTSW	17	24964910	missense	probably damaging	1.00
R1856:Cramp1l	UTSW	17	24968978	missense	probably damaging	1.00
R1881:Cramp1l	UTSW	17	24977682	splice site	probably benign
R1968:Cramp1l	UTSW	17	24964939	missense	probably damaging	1.00
R2047:Cramp1l	UTSW	17	25003215	nonsense	probably null
R2099:Cramp1l	UTSW	17	24973085	missense	probably benign	0.01
R2298:Cramp1l	UTSW	17	24997480	missense	probably damaging	0.96
R3752:Cramp1l	UTSW	17	24971558	missense	probably damaging	1.00
R3821:Cramp1l	UTSW	17	24974782	missense	probably damaging	1.00
R3861:Cramp1l	UTSW	17	24997614	splice site	probably benign
R4399:Cramp1l	UTSW	17	24979585	missense	probably damaging	1.00
R4847:Cramp1l	UTSW	17	24985089	missense	probably damaging	1.00
R4883:Cramp1l	UTSW	17	24982319	missense	probably benign
R5579:Cramp1l	UTSW	17	24973113	missense	possibly damaging	0.89
R5631:Cramp1l	UTSW	17	24985603	missense	possibly damaging	0.93
R5716:Cramp1l	UTSW	17	24974735	missense	probably damaging	0.99
R6589:Cramp1l	UTSW	17	24977492	splice site	probably null
R6631:Cramp1l	UTSW	17	24983957	missense	probably benign	0.40
R7323:Cramp1l	UTSW	17	24982405	missense	possibly damaging	0.90
R7672:Cramp1l	UTSW	17	24982466	missense	probably damaging	0.96
R7832:Cramp1l	UTSW	17	24983222	missense	probably damaging	0.96
R8071:Cramp1l	UTSW	17	24982700	missense	probably damaging	0.99
R8244:Cramp1l	UTSW	17	24971410	missense	probably damaging	1.00
R8430:Cramp1l	UTSW	17	24977562	missense	probably damaging	1.00
R8783:Cramp1l	UTSW	17	24974758	missense	probably damaging	0.99
R8890:Cramp1l	UTSW	17	24983140	missense	probably damaging	1.00
R8892:Cramp1l	UTSW	17	24983140	missense	probably damaging	1.00
R8894:Cramp1l	UTSW	17	24983140	missense	probably damaging	1.00
R8937:Cramp1l	UTSW	17	24983982	missense	probably damaging	0.99
R8941:Cramp1l	UTSW	17	24983140	missense	probably damaging	1.00
R9029:Cramp1l	UTSW	17	25013910	missense	probably damaging	1.00
R9047:Cramp1l	UTSW	17	24979629	missense	possibly damaging	0.90
R9149:Cramp1l	UTSW	17	24968946	missense	probably damaging	0.99
R9262:Cramp1l	UTSW	17	25013946	missense	probably damaging	0.99
R9460:Cramp1l	UTSW	17	25003307	missense	probably damaging	1.00
R9614:Cramp1l	UTSW	17	24982809	missense	probably damaging	1.00
R9615:Cramp1l	UTSW	17	24982809	missense	probably damaging	1.00
R9651:Cramp1l	UTSW	17	24982809	missense	probably damaging	1.00
R9652:Cramp1l	UTSW	17	24982809	missense	probably damaging	1.00
R9653:Cramp1l	UTSW	17	24982809	missense	probably damaging	1.00
R9665:Cramp1l	UTSW	17	24977571	missense	probably damaging	1.00
R9753:Cramp1l	UTSW	17	24972346	missense	possibly damaging	0.81

Predicted Primers

PCR Primer
(F):5'- CCATAGTGGCAGCTAGATGC -3'
(R):5'- CTTGGAAAAGGTCTTATTCCCATC -3'

Sequencing Primer
(F):5'- GGACACAGTGTATAATTAGTGTATGC -3'
(R):5'- CCTCCTGGTTGACAGTTATG -3'

Posted On

2019-06-26