Mutagenetix > Incidental Mutation

Incidental Mutation 'R7316:Ift70a1'

567938

Institutional Source

Beutler Lab

Gene Symbol

Ift70a1

Ensembl Gene

ENSMUSG00000075271

Gene Name

intraflagellar transport 70A1

Synonyms

Ttc30a1, 4930506L13Rik

MMRRC Submission

045413-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.232) question?

Stock #

R7316 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

75809450-75812311 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 75811201 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Glutamine at position 294 (L294Q)

Ref Sequence

ENSEMBL: ENSMUSP00000097574 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000099994] [ENSMUST00000099995]

AlphaFold

Q99J38

Predicted Effect

probably damaging
Transcript: ENSMUST00000099994
AA Change: L294Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000097574
Gene: ENSMUSG00000075271
AA Change: L294Q

Domain	Start	End	E-Value	Type
TPR	45	78	1.1e-1	SMART
TPR	153	186	2.19e1	SMART
TPR	187	220	6.24e1	SMART
coiled coil region	380	411	N/A	INTRINSIC
TPR	423	456	2.24e1	SMART
Blast:TPR	457	491	1e-10	BLAST
low complexity region	514	528	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000099995

SMART Domains

Protein: ENSMUSP00000097575
Gene: ENSMUSG00000075272

Domain	Start	End	E-Value	Type
TPR	45	78	1.1e-1	SMART
TPR	153	186	2.77e1	SMART
Blast:TPR	187	224	1e-13	BLAST
coiled coil region	380	405	N/A	INTRINSIC
TPR	423	456	2.24e1	SMART
Blast:TPR	457	491	1e-10	BLAST
low complexity region	514	528	N/A	INTRINSIC

Meta Mutation Damage Score

0.8234

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

99% (93/94)

Allele List at MGI

Other mutations in this stock

Total: 94 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933434E20Rik	G	A	3: 89,969,020 (GRCm39)	M214I	probably benign	Het
Aadat	G	T	8: 60,979,668 (GRCm39)	G177C	probably damaging	Het
Adam4	T	C	12: 81,466,498 (GRCm39)	I708V	probably benign	Het
Aip	T	C	19: 4,164,793 (GRCm39)	N264S	probably benign	Het
Alox8	A	T	11: 69,077,064 (GRCm39)	D505E	probably benign	Het
Ap3d1	A	T	10: 80,553,693 (GRCm39)	I518N	probably damaging	Het
Arf3	G	A	15: 98,638,874 (GRCm39)	Q128*	probably null	Het
Asph	A	G	4: 9,537,746 (GRCm39)	V344A	probably benign	Het
Birc6	A	T	17: 74,911,489 (GRCm39)	R1500S	probably damaging	Het
Bptf	G	A	11: 106,963,935 (GRCm39)	T1753I	probably damaging	Het
Bptf	A	T	11: 107,001,740 (GRCm39)	C457*	probably null	Het
Brpf3	T	A	17: 29,033,660 (GRCm39)	I568N	probably damaging	Het
Btnl4	G	C	17: 34,688,031 (GRCm39)	N582K	probably benign	Het
Camsap3	C	A	8: 3,654,648 (GRCm39)	P773T	possibly damaging	Het
Capsl	A	T	15: 9,461,888 (GRCm39)	I95L	probably benign	Het
Cd96	T	A	16: 45,890,016 (GRCm39)	M336L	probably benign	Het
Cdan1	A	T	2: 120,558,813 (GRCm39)		probably null	Het
Chd3	A	T	11: 69,236,394 (GRCm39)	L1939Q	probably damaging	Het
Cngb3	A	T	4: 19,425,599 (GRCm39)	Y469F	probably benign	Het
Cp	T	C	3: 20,026,916 (GRCm39)	L448P	probably damaging	Het
Csnk1g2	T	C	10: 80,475,687 (GRCm39)	V418A	possibly damaging	Het
Dag1	A	T	9: 108,086,701 (GRCm39)	S147T	probably benign	Het
Dnajc25	T	A	4: 59,017,693 (GRCm39)	Y117*	probably null	Het
Dpysl2	A	T	14: 67,100,044 (GRCm39)	M64K	possibly damaging	Het
Dus3l	A	G	17: 57,072,551 (GRCm39)	H38R	possibly damaging	Het
Eme2	G	A	17: 25,113,840 (GRCm39)	R62W	probably damaging	Het
Enox1	A	T	14: 77,958,298 (GRCm39)	M616L	probably benign	Het
Epb41l4b	T	A	4: 57,019,867 (GRCm39)	T708S	probably benign	Het
Fat2	A	T	11: 55,176,893 (GRCm39)	I1534N	probably damaging	Het
Fer1l5	A	G	1: 36,457,197 (GRCm39)	T1649A	probably benign	Het
Fmo9	A	G	1: 166,491,215 (GRCm39)	V421A	probably benign	Het
Fsip2	A	C	2: 82,820,035 (GRCm39)	Y5256S	possibly damaging	Het
Gapvd1	G	A	2: 34,594,681 (GRCm39)	L804F	probably damaging	Het
Garin1a	A	G	6: 29,286,101 (GRCm39)	M187V	probably benign	Het
Gen1	A	G	12: 11,291,470 (GRCm39)	V838A	probably benign	Het
Gnptab	A	T	10: 88,236,572 (GRCm39)	N59I	probably damaging	Het
Grm5	A	G	7: 87,624,473 (GRCm39)	T347A	probably benign	Het
Gsdmc3	T	C	15: 63,730,251 (GRCm39)	N438D	possibly damaging	Het
Hmcn1	A	G	1: 150,608,697 (GRCm39)	L1495S	probably damaging	Het
Islr2	T	C	9: 58,105,250 (GRCm39)	E714G	probably damaging	Het
Larp4	A	T	15: 99,898,898 (GRCm39)	M430L	probably benign	Het
Lpcat2b	A	G	5: 107,580,979 (GRCm39)	I103V	not run	Het
Lrguk	C	T	6: 34,080,191 (GRCm39)	S1142F	unknown	Het
Lrit2	G	T	14: 36,790,815 (GRCm39)	V165F	probably damaging	Het
Mast3	T	A	8: 71,232,432 (GRCm39)	I1182F	probably damaging	Het
Mcm6	C	T	1: 128,287,245 (GRCm39)	D20N	probably damaging	Het
Mief1	A	G	15: 80,133,598 (GRCm39)	I218M	probably damaging	Het
Mmp2	A	G	8: 93,567,038 (GRCm39)	T453A	probably benign	Het
Ms4a18	T	A	19: 10,979,360 (GRCm39)	S219C	probably damaging	Het
Myo5c	A	T	9: 75,176,920 (GRCm39)	T622S	probably benign	Het
Neb	A	T	2: 52,161,450 (GRCm39)	M2114K	possibly damaging	Het
Nemp1	T	A	10: 127,525,212 (GRCm39)	L122*	probably null	Het
Nkx2-1	T	C	12: 56,581,583 (GRCm39)	N88S	probably benign	Het
Nr2c2	T	A	6: 92,131,444 (GRCm39)	C202S	probably damaging	Het
Ntsr1	A	C	2: 180,142,545 (GRCm39)	D112A	probably damaging	Het
Or14j3	A	G	17: 37,901,026 (GRCm39)	S73P	probably damaging	Het
Or56a41	A	T	7: 104,740,107 (GRCm39)	H246Q	probably damaging	Het
Or6n2	A	T	1: 173,897,727 (GRCm39)	I288F	probably benign	Het
Osbp2	C	A	11: 3,676,431 (GRCm39)	R73L	probably damaging	Het
Pbp2	T	A	6: 135,286,830 (GRCm39)	E172D	probably damaging	Het
Pcdhgc3	T	C	18: 37,941,501 (GRCm39)	I634T	probably benign	Het
Pcnx1	T	C	12: 82,042,323 (GRCm39)	S38P	probably benign	Het
Phyh	A	T	2: 4,940,855 (GRCm39)	K252*	probably null	Het
Plcb3	C	T	19: 6,943,753 (GRCm39)		probably null	Het
Ppargc1b	T	C	18: 61,440,909 (GRCm39)	S670G	probably damaging	Het
Prorp	A	G	12: 55,351,429 (GRCm39)	D246G	probably damaging	Het
Ptprc	T	C	1: 137,992,509 (GRCm39)	Y1067C	probably damaging	Het
Pwwp2b	A	C	7: 138,836,140 (GRCm39)	E527A	probably benign	Het
Pzp	T	C	6: 128,490,736 (GRCm39)	D409G	probably damaging	Het
Rbfox2	A	T	15: 77,016,929 (GRCm39)	N148K	possibly damaging	Het
Resf1	T	C	6: 149,228,136 (GRCm39)	L394P	probably damaging	Het
Rps24	T	C	14: 24,540,757 (GRCm39)		probably benign	Het
Slc35e4	T	C	11: 3,862,584 (GRCm39)	K202E	probably damaging	Het
Spata7	C	T	12: 98,624,871 (GRCm39)	R258W	probably damaging	Het
Spen	A	T	4: 141,204,365 (GRCm39)	S1421T	unknown	Het
Svep1	T	A	4: 58,068,763 (GRCm39)	I3008F	possibly damaging	Het
Tbc1d1	G	T	5: 64,492,620 (GRCm39)		probably null	Het
Thsd4	T	A	9: 59,894,642 (GRCm39)	H772L	probably benign	Het
Tle1	T	C	4: 72,036,529 (GRCm39)	I769V	probably benign	Het
Tm4sf19	T	A	16: 32,226,466 (GRCm39)	S127T	possibly damaging	Het
Tmprss9	C	A	10: 80,730,813 (GRCm39)	R780S	probably benign	Het
Tpp2	T	C	1: 44,009,591 (GRCm39)	V475A	probably benign	Het
Ttn	A	G	2: 76,692,509 (GRCm39)	V471A		Het
Ttn	A	T	2: 76,597,257 (GRCm39)	N19885K	probably damaging	Het
Tub	A	T	7: 108,629,378 (GRCm39)	T478S	possibly damaging	Het
Ube2q2l	T	C	6: 136,378,276 (GRCm39)	K185E	possibly damaging	Het
Vmn2r88	A	T	14: 51,651,712 (GRCm39)	Y342F		Het
Wdr18	C	A	10: 79,801,059 (GRCm39)	D157E	probably benign	Het
Xrra1	A	T	7: 99,525,423 (GRCm39)		probably null	Het
Zc3h4	G	C	7: 16,169,260 (GRCm39)	G1198A	unknown	Het
Zfp568	A	T	7: 29,721,681 (GRCm39)	I209F	possibly damaging	Het
Zfp787	C	A	7: 6,158,523 (GRCm39)		probably benign	Het
Zfp974	A	T	7: 27,609,863 (GRCm39)	Y621N	possibly damaging	Het
Zyg11b	A	G	4: 108,107,699 (GRCm39)	I493T	possibly damaging	Het

Other mutations in Ift70a1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00493:Ift70a1	APN	2	75,812,085 (GRCm39)	unclassified	probably benign
IGL01140:Ift70a1	APN	2	75,810,259 (GRCm39)	missense	probably benign	0.01
IGL01527:Ift70a1	APN	2	75,810,860 (GRCm39)	missense	probably benign
IGL01690:Ift70a1	APN	2	75,810,277 (GRCm39)	missense	probably benign
IGL01916:Ift70a1	APN	2	75,811,223 (GRCm39)	missense	probably damaging	0.98
IGL02342:Ift70a1	APN	2	75,810,976 (GRCm39)	missense	probably benign	0.45
IGL02728:Ift70a1	APN	2	75,811,193 (GRCm39)	missense	probably benign	0.01
IGL03171:Ift70a1	APN	2	75,810,851 (GRCm39)	missense	probably benign	0.00
PIT4677001:Ift70a1	UTSW	2	75,810,113 (GRCm39)	missense	possibly damaging	0.60
R0781:Ift70a1	UTSW	2	75,810,320 (GRCm39)	missense	probably damaging	0.98
R1110:Ift70a1	UTSW	2	75,810,320 (GRCm39)	missense	probably damaging	0.98
R1185:Ift70a1	UTSW	2	75,810,696 (GRCm39)	missense	probably damaging	1.00
R1185:Ift70a1	UTSW	2	75,810,696 (GRCm39)	missense	probably damaging	1.00
R1750:Ift70a1	UTSW	2	75,810,599 (GRCm39)	missense	probably benign	0.21
R2016:Ift70a1	UTSW	2	75,811,801 (GRCm39)	missense	probably benign	0.42
R2017:Ift70a1	UTSW	2	75,811,801 (GRCm39)	missense	probably benign	0.42
R2020:Ift70a1	UTSW	2	75,811,279 (GRCm39)	missense	probably benign
R3606:Ift70a1	UTSW	2	75,811,621 (GRCm39)	missense	probably benign	0.06
R4272:Ift70a1	UTSW	2	75,810,818 (GRCm39)	missense	probably damaging	1.00
R4600:Ift70a1	UTSW	2	75,810,977 (GRCm39)	missense	probably benign	0.26
R4894:Ift70a1	UTSW	2	75,810,088 (GRCm39)	makesense	probably null
R4996:Ift70a1	UTSW	2	75,810,266 (GRCm39)	missense	probably benign
R5217:Ift70a1	UTSW	2	75,811,147 (GRCm39)	missense	probably damaging	1.00
R5721:Ift70a1	UTSW	2	75,811,715 (GRCm39)	missense	probably damaging	0.99
R6002:Ift70a1	UTSW	2	75,811,121 (GRCm39)	missense	possibly damaging	0.59
R6006:Ift70a1	UTSW	2	75,811,832 (GRCm39)	missense	probably benign	0.08
R7391:Ift70a1	UTSW	2	75,810,359 (GRCm39)	missense	probably benign	0.05
R7494:Ift70a1	UTSW	2	75,810,242 (GRCm39)	missense	probably damaging	1.00
R7960:Ift70a1	UTSW	2	75,811,188 (GRCm39)	missense	probably benign	0.00
R7972:Ift70a1	UTSW	2	75,810,802 (GRCm39)	missense	probably damaging	1.00
R7974:Ift70a1	UTSW	2	75,810,688 (GRCm39)	missense	probably damaging	1.00
R8443:Ift70a1	UTSW	2	75,811,519 (GRCm39)	missense	probably benign	0.00
R8792:Ift70a1	UTSW	2	75,811,898 (GRCm39)	nonsense	probably null
R8992:Ift70a1	UTSW	2	75,810,251 (GRCm39)	missense	probably benign	0.07
R9145:Ift70a1	UTSW	2	75,810,423 (GRCm39)	nonsense	probably null
R9268:Ift70a1	UTSW	2	75,811,279 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- GCAAGTGATCATGGCATCCAAG -3'
(R):5'- TGTTCGCAGTGTTGGCAAC -3'

Sequencing Primer
(F):5'- TGATCATGGCATCCAAGAAGTC -3'
(R):5'- GGCAACACTGTAGTCCTTCAC -3'

Posted On

2019-06-26