Mutagenetix > Incidental Mutation

Incidental Mutation 'R7316:Prorp'

567994

Institutional Source

Beutler Lab

Gene Symbol

Prorp

Ensembl Gene

ENSMUSG00000021023

Gene Name

protein only RNase P catalytic subunit

Synonyms

Mrpp3, 1110008L16Rik

MMRRC Submission

045413-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.550) question?

Stock #

R7316 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

55349422-55429276 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 55351429 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 246 (D246G)

Ref Sequence

ENSEMBL: ENSMUSP00000139252 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021410] [ENSMUST00000021411] [ENSMUST00000183475] [ENSMUST00000183654] [ENSMUST00000184766] [ENSMUST00000184980]

AlphaFold

Q8JZY4

Predicted Effect

probably benign
Transcript: ENSMUST00000021410

SMART Domains

Protein: ENSMUSP00000021410
Gene: ENSMUSG00000021022

Domain	Start	End	E-Value	Type
PDB:4I5K\|B	188	437	1e-25	PDB
SCOP:d1dgua_	258	413	4e-8	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000021411
AA Change: D246G

PolyPhen 2 Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000021411
Gene: ENSMUSG00000021023
AA Change: D246G

Domain	Start	End	E-Value	Type
Pfam:PRORP	339	575	4.8e-106	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000183475
AA Change: D246G

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000139252
Gene: ENSMUSG00000021023
AA Change: D246G

Domain	Start	End	E-Value	Type
low complexity region	410	424	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000183654

SMART Domains

Protein: ENSMUSP00000138821
Gene: ENSMUSG00000021023

Domain	Start	End	E-Value	Type
Pfam:RNase_Zc3h12a	33	185	8e-7	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000184249

Predicted Effect

probably damaging
Transcript: ENSMUST00000184766
AA Change: D246G

PolyPhen 2 Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000139204
Gene: ENSMUSG00000021023
AA Change: D246G

Domain	Start	End	E-Value	Type
PDB:4G26\|A	153	581	1e-9	PDB

Predicted Effect

probably benign
Transcript: ENSMUST00000184980

SMART Domains

Protein: ENSMUSP00000139123
Gene: ENSMUSG00000021023

Domain	Start	End	E-Value	Type
low complexity region	113	127	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000218116

Meta Mutation Damage Score

0.3136

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

99% (93/94)

Allele List at MGI

Other mutations in this stock

Total: 94 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933434E20Rik	G	A	3: 89,969,020 (GRCm39)	M214I	probably benign	Het
Aadat	G	T	8: 60,979,668 (GRCm39)	G177C	probably damaging	Het
Adam4	T	C	12: 81,466,498 (GRCm39)	I708V	probably benign	Het
Aip	T	C	19: 4,164,793 (GRCm39)	N264S	probably benign	Het
Alox8	A	T	11: 69,077,064 (GRCm39)	D505E	probably benign	Het
Ap3d1	A	T	10: 80,553,693 (GRCm39)	I518N	probably damaging	Het
Arf3	G	A	15: 98,638,874 (GRCm39)	Q128*	probably null	Het
Asph	A	G	4: 9,537,746 (GRCm39)	V344A	probably benign	Het
Birc6	A	T	17: 74,911,489 (GRCm39)	R1500S	probably damaging	Het
Bptf	G	A	11: 106,963,935 (GRCm39)	T1753I	probably damaging	Het
Bptf	A	T	11: 107,001,740 (GRCm39)	C457*	probably null	Het
Brpf3	T	A	17: 29,033,660 (GRCm39)	I568N	probably damaging	Het
Btnl4	G	C	17: 34,688,031 (GRCm39)	N582K	probably benign	Het
Camsap3	C	A	8: 3,654,648 (GRCm39)	P773T	possibly damaging	Het
Capsl	A	T	15: 9,461,888 (GRCm39)	I95L	probably benign	Het
Cd96	T	A	16: 45,890,016 (GRCm39)	M336L	probably benign	Het
Cdan1	A	T	2: 120,558,813 (GRCm39)		probably null	Het
Chd3	A	T	11: 69,236,394 (GRCm39)	L1939Q	probably damaging	Het
Cngb3	A	T	4: 19,425,599 (GRCm39)	Y469F	probably benign	Het
Cp	T	C	3: 20,026,916 (GRCm39)	L448P	probably damaging	Het
Csnk1g2	T	C	10: 80,475,687 (GRCm39)	V418A	possibly damaging	Het
Dag1	A	T	9: 108,086,701 (GRCm39)	S147T	probably benign	Het
Dnajc25	T	A	4: 59,017,693 (GRCm39)	Y117*	probably null	Het
Dpysl2	A	T	14: 67,100,044 (GRCm39)	M64K	possibly damaging	Het
Dus3l	A	G	17: 57,072,551 (GRCm39)	H38R	possibly damaging	Het
Eme2	G	A	17: 25,113,840 (GRCm39)	R62W	probably damaging	Het
Enox1	A	T	14: 77,958,298 (GRCm39)	M616L	probably benign	Het
Epb41l4b	T	A	4: 57,019,867 (GRCm39)	T708S	probably benign	Het
Fat2	A	T	11: 55,176,893 (GRCm39)	I1534N	probably damaging	Het
Fer1l5	A	G	1: 36,457,197 (GRCm39)	T1649A	probably benign	Het
Fmo9	A	G	1: 166,491,215 (GRCm39)	V421A	probably benign	Het
Fsip2	A	C	2: 82,820,035 (GRCm39)	Y5256S	possibly damaging	Het
Gapvd1	G	A	2: 34,594,681 (GRCm39)	L804F	probably damaging	Het
Garin1a	A	G	6: 29,286,101 (GRCm39)	M187V	probably benign	Het
Gen1	A	G	12: 11,291,470 (GRCm39)	V838A	probably benign	Het
Gnptab	A	T	10: 88,236,572 (GRCm39)	N59I	probably damaging	Het
Grm5	A	G	7: 87,624,473 (GRCm39)	T347A	probably benign	Het
Gsdmc3	T	C	15: 63,730,251 (GRCm39)	N438D	possibly damaging	Het
Hmcn1	A	G	1: 150,608,697 (GRCm39)	L1495S	probably damaging	Het
Ift70a1	A	T	2: 75,811,201 (GRCm39)	L294Q	probably damaging	Het
Islr2	T	C	9: 58,105,250 (GRCm39)	E714G	probably damaging	Het
Larp4	A	T	15: 99,898,898 (GRCm39)	M430L	probably benign	Het
Lpcat2b	A	G	5: 107,580,979 (GRCm39)	I103V	not run	Het
Lrguk	C	T	6: 34,080,191 (GRCm39)	S1142F	unknown	Het
Lrit2	G	T	14: 36,790,815 (GRCm39)	V165F	probably damaging	Het
Mast3	T	A	8: 71,232,432 (GRCm39)	I1182F	probably damaging	Het
Mcm6	C	T	1: 128,287,245 (GRCm39)	D20N	probably damaging	Het
Mief1	A	G	15: 80,133,598 (GRCm39)	I218M	probably damaging	Het
Mmp2	A	G	8: 93,567,038 (GRCm39)	T453A	probably benign	Het
Ms4a18	T	A	19: 10,979,360 (GRCm39)	S219C	probably damaging	Het
Myo5c	A	T	9: 75,176,920 (GRCm39)	T622S	probably benign	Het
Neb	A	T	2: 52,161,450 (GRCm39)	M2114K	possibly damaging	Het
Nemp1	T	A	10: 127,525,212 (GRCm39)	L122*	probably null	Het
Nkx2-1	T	C	12: 56,581,583 (GRCm39)	N88S	probably benign	Het
Nr2c2	T	A	6: 92,131,444 (GRCm39)	C202S	probably damaging	Het
Ntsr1	A	C	2: 180,142,545 (GRCm39)	D112A	probably damaging	Het
Or14j3	A	G	17: 37,901,026 (GRCm39)	S73P	probably damaging	Het
Or56a41	A	T	7: 104,740,107 (GRCm39)	H246Q	probably damaging	Het
Or6n2	A	T	1: 173,897,727 (GRCm39)	I288F	probably benign	Het
Osbp2	C	A	11: 3,676,431 (GRCm39)	R73L	probably damaging	Het
Pbp2	T	A	6: 135,286,830 (GRCm39)	E172D	probably damaging	Het
Pcdhgc3	T	C	18: 37,941,501 (GRCm39)	I634T	probably benign	Het
Pcnx1	T	C	12: 82,042,323 (GRCm39)	S38P	probably benign	Het
Phyh	A	T	2: 4,940,855 (GRCm39)	K252*	probably null	Het
Plcb3	C	T	19: 6,943,753 (GRCm39)		probably null	Het
Ppargc1b	T	C	18: 61,440,909 (GRCm39)	S670G	probably damaging	Het
Ptprc	T	C	1: 137,992,509 (GRCm39)	Y1067C	probably damaging	Het
Pwwp2b	A	C	7: 138,836,140 (GRCm39)	E527A	probably benign	Het
Pzp	T	C	6: 128,490,736 (GRCm39)	D409G	probably damaging	Het
Rbfox2	A	T	15: 77,016,929 (GRCm39)	N148K	possibly damaging	Het
Resf1	T	C	6: 149,228,136 (GRCm39)	L394P	probably damaging	Het
Rps24	T	C	14: 24,540,757 (GRCm39)		probably benign	Het
Slc35e4	T	C	11: 3,862,584 (GRCm39)	K202E	probably damaging	Het
Spata7	C	T	12: 98,624,871 (GRCm39)	R258W	probably damaging	Het
Spen	A	T	4: 141,204,365 (GRCm39)	S1421T	unknown	Het
Svep1	T	A	4: 58,068,763 (GRCm39)	I3008F	possibly damaging	Het
Tbc1d1	G	T	5: 64,492,620 (GRCm39)		probably null	Het
Thsd4	T	A	9: 59,894,642 (GRCm39)	H772L	probably benign	Het
Tle1	T	C	4: 72,036,529 (GRCm39)	I769V	probably benign	Het
Tm4sf19	T	A	16: 32,226,466 (GRCm39)	S127T	possibly damaging	Het
Tmprss9	C	A	10: 80,730,813 (GRCm39)	R780S	probably benign	Het
Tpp2	T	C	1: 44,009,591 (GRCm39)	V475A	probably benign	Het
Ttn	A	G	2: 76,692,509 (GRCm39)	V471A		Het
Ttn	A	T	2: 76,597,257 (GRCm39)	N19885K	probably damaging	Het
Tub	A	T	7: 108,629,378 (GRCm39)	T478S	possibly damaging	Het
Ube2q2l	T	C	6: 136,378,276 (GRCm39)	K185E	possibly damaging	Het
Vmn2r88	A	T	14: 51,651,712 (GRCm39)	Y342F		Het
Wdr18	C	A	10: 79,801,059 (GRCm39)	D157E	probably benign	Het
Xrra1	A	T	7: 99,525,423 (GRCm39)		probably null	Het
Zc3h4	G	C	7: 16,169,260 (GRCm39)	G1198A	unknown	Het
Zfp568	A	T	7: 29,721,681 (GRCm39)	I209F	possibly damaging	Het
Zfp787	C	A	7: 6,158,523 (GRCm39)		probably benign	Het
Zfp974	A	T	7: 27,609,863 (GRCm39)	Y621N	possibly damaging	Het
Zyg11b	A	G	4: 108,107,699 (GRCm39)	I493T	possibly damaging	Het

Other mutations in Prorp

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01701:Prorp	APN	12	55,355,660 (GRCm39)	splice site	probably benign
IGL01932:Prorp	APN	12	55,350,910 (GRCm39)	missense	probably benign
IGL03030:Prorp	APN	12	55,351,429 (GRCm39)	missense	probably damaging	1.00
R0102:Prorp	UTSW	12	55,429,082 (GRCm39)	missense	probably benign	0.37
R0892:Prorp	UTSW	12	55,429,033 (GRCm39)	splice site	probably null
R1479:Prorp	UTSW	12	55,426,172 (GRCm39)	missense	probably damaging	1.00
R1510:Prorp	UTSW	12	55,350,997 (GRCm39)	missense	probably benign	0.21
R1845:Prorp	UTSW	12	55,351,117 (GRCm39)	missense	possibly damaging	0.58
R1992:Prorp	UTSW	12	55,384,991 (GRCm39)	missense	probably damaging	1.00
R2307:Prorp	UTSW	12	55,351,101 (GRCm39)	missense	probably damaging	1.00
R4080:Prorp	UTSW	12	55,351,398 (GRCm39)	missense	possibly damaging	0.88
R4081:Prorp	UTSW	12	55,351,398 (GRCm39)	missense	possibly damaging	0.88
R4082:Prorp	UTSW	12	55,351,398 (GRCm39)	missense	possibly damaging	0.88
R5205:Prorp	UTSW	12	55,351,226 (GRCm39)	nonsense	probably null
R5590:Prorp	UTSW	12	55,351,257 (GRCm39)	missense	possibly damaging	0.89
R5940:Prorp	UTSW	12	55,351,659 (GRCm39)	missense	probably damaging	1.00
R5988:Prorp	UTSW	12	55,424,002 (GRCm39)	missense	probably damaging	1.00
R6147:Prorp	UTSW	12	55,426,093 (GRCm39)	missense	probably damaging	0.99
R7208:Prorp	UTSW	12	55,355,430 (GRCm39)	splice site	probably null
R7220:Prorp	UTSW	12	55,351,200 (GRCm39)	missense	possibly damaging	0.79
R7304:Prorp	UTSW	12	55,351,429 (GRCm39)	missense	probably damaging	1.00
R7502:Prorp	UTSW	12	55,351,206 (GRCm39)	missense	probably damaging	1.00
R7908:Prorp	UTSW	12	55,426,250 (GRCm39)	missense	possibly damaging	0.56
R7967:Prorp	UTSW	12	55,350,979 (GRCm39)	missense	probably benign
R9030:Prorp	UTSW	12	55,426,192 (GRCm39)	missense	probably damaging	1.00
R9125:Prorp	UTSW	12	55,355,611 (GRCm39)	missense	possibly damaging	0.77
R9135:Prorp	UTSW	12	55,426,189 (GRCm39)	missense	probably damaging	1.00
R9136:Prorp	UTSW	12	55,350,727 (GRCm39)	missense	probably benign
R9321:Prorp	UTSW	12	55,351,434 (GRCm39)	missense	possibly damaging	0.94
R9456:Prorp	UTSW	12	55,385,015 (GRCm39)	missense	probably damaging	1.00
R9621:Prorp	UTSW	12	55,429,042 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- AGCAGACGTCAGAAGTTATTGATG -3'
(R):5'- ACTGTGTGCAAATGACTCTCC -3'

Sequencing Primer
(F):5'- GACGTCAGAAGTTATTGATGTCTATG -3'
(R):5'- GTGTGCAAATGACTCTCCAGGATAC -3'

Posted On

2019-06-26