Mutagenetix > Incidental Mutation

Incidental Mutation 'R7320:Clcn4'

568132

Institutional Source

Beutler Lab

Gene Symbol

Clcn4

Ensembl Gene

ENSMUSG00000000605

Gene Name

chloride channel, voltage-sensitive 4

Synonyms

Clc4-2, Clcn4-2

MMRRC Submission

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7320 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

7282309-7300851 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 7291828 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Glutamine at position 311 (H311Q)

Ref Sequence

ENSEMBL: ENSMUSP00000000619 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000000619] [ENSMUST00000209916] [ENSMUST00000210061] [ENSMUST00000210362] [ENSMUST00000210594] [ENSMUST00000211574]

AlphaFold

Q61418

Predicted Effect

probably benign
Transcript: ENSMUST00000000619
AA Change: H311Q

PolyPhen 2 Score 0.195 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000000619
Gene: ENSMUSG00000000605
AA Change: H311Q

Domain	Start	End	E-Value	Type
transmembrane domain	57	79	N/A	INTRINSIC
Pfam:Voltage_CLC	149	552	2.7e-111	PFAM
CBS	596	646	1.07e-1	SMART
CBS	687	734	4.92e-10	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000209916

Predicted Effect

probably benign
Transcript: ENSMUST00000210061
AA Change: H311Q

PolyPhen 2 Score 0.195 (Sensitivity: 0.92; Specificity: 0.87)

Predicted Effect

probably benign
Transcript: ENSMUST00000210362

Predicted Effect

probably benign
Transcript: ENSMUST00000210594
AA Change: H251Q

PolyPhen 2 Score 0.195 (Sensitivity: 0.92; Specificity: 0.87)

Predicted Effect

probably benign
Transcript: ENSMUST00000211574

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The CLCN family of voltage-dependent chloride channel genes comprises nine members (CLCN1-7, Ka and Kb) which demonstrate quite diverse functional characteristics while sharing significant sequence homology. Chloride channel 4 has an evolutionary conserved CpG island and is conserved in both mouse and hamster. This gene is mapped in close proximity to APXL (Apical protein Xenopus laevis-like) and OA1 (Ocular albinism type I), which are both located on the human X chromosome at band p22.3. The physiological role of chloride channel 4 remains unknown but may contribute to the pathogenesis of neuronal disorders. Alternate splicing results in two transcript variants that encode different proteins. [provided by RefSeq, Mar 2012]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit no obvious phenotype. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5330417C22Rik	T	A	3: 108,464,303	K650*	probably null	Het
Abcc3	A	G	11: 94,367,645	I458T	probably benign	Het
Adam29	A	G	8: 55,872,714	I235T	possibly damaging	Het
AF529169	A	G	9: 89,601,626	S573P	probably benign	Het
Afap1	G	A	5: 35,948,223	V174I	probably damaging	Het
Ak8	A	T	2: 28,812,992	D456V	probably damaging	Het
Alb	T	C	5: 90,464,987		probably null	Het
Alox12	C	T	11: 70,254,472	A92T	probably benign	Het
Arhgap23	T	C	11: 97,451,545	S218P	probably benign	Het
Blm	G	A	7: 80,455,354	Q1389*	probably null	Het
C1ql4	A	T	15: 99,087,724	V2E	unknown	Het
Casp12	A	G	9: 5,348,897		probably null	Het
Ccdc73	A	T	2: 104,999,176	I1065F	possibly damaging	Het
Ccdc83	C	T	7: 90,224,034	G371D	probably damaging	Het
Cfap65	A	G	1: 74,926,604	S416P	probably damaging	Het
Cftr	T	A	6: 18,319,013	C1351S	probably damaging	Het
Cldn13	T	G	5: 134,915,020	I104L	probably benign	Het
Cul9	A	G	17: 46,510,909	V1880A	possibly damaging	Het
Ddx17	A	T	15: 79,531,904	D407E	probably damaging	Het
Ddx28	G	A	8: 106,011,325	P34S	probably damaging	Het
Dnah5	A	T	15: 28,270,470	N973Y	probably null	Het
Dock10	A	G	1: 80,549,704		probably null	Het
Dock3	T	C	9: 106,895,524	D510G	probably benign	Het
Dst	T	A	1: 34,191,094	D2589E	probably benign	Het
E2f7	T	C	10: 110,764,130	Y249H	not run	Het
Eef2kmt	T	C	16: 5,250,509	Y69C	possibly damaging	Het
Erlin1	T	C	19: 44,059,065	Y139C	probably damaging	Het
Exog	G	T	9: 119,462,478	V274L	possibly damaging	Het
Fam83e	G	A	7: 45,722,472	V98M	probably benign	Het
Fras1	C	T	5: 96,709,886	T2013I	probably benign	Het
Gart	G	T	16: 91,621,681	A970E	probably benign	Het
Gga2	T	A	7: 122,002,103	H259L	probably benign	Het
Glis3	C	A	19: 28,531,598	V329F	probably damaging	Het
Gm6356	T	A	14: 6,972,923	N53I	probably damaging	Het
Golgb1	C	A	16: 36,915,951	C1894*	probably null	Het
Ifi203	T	C	1: 173,929,167	N350S	unknown	Het
Isy1	T	A	6: 87,833,706	R55S	unknown	Het
Itsn1	A	T	16: 91,839,699	D678V	unknown	Het
Lhcgr	T	A	17: 88,742,078	R673S	probably benign	Het
Lnx2	C	A	5: 147,020,133	R601L	possibly damaging	Het
Map4	A	G	9: 110,081,517	T1093A	probably benign	Het
Mink1	A	G	11: 70,599,073	K92E	probably benign	Het
Moxd1	A	G	10: 24,301,465	I560V	probably benign	Het
Mrc2	C	A	11: 105,329,235	D327E	possibly damaging	Het
Notch2	A	G	3: 98,131,327	E1262G	possibly damaging	Het
Olfr1025-ps1	A	T	2: 85,918,374	I150F	probably benign	Het
Olfr1052	GTACTTTTT	GT	2: 86,297,994		probably null	Het
Olfr123	T	A	17: 37,796,357	N304K	probably benign	Het
Olfr1298	A	G	2: 111,645,952	L15S	probably benign	Het
Olfr1434	G	A	19: 12,283,816	G256D	possibly damaging	Het
Olfr1477	T	A	19: 13,503,180	M279K	possibly damaging	Het
Olfr653	C	A	7: 104,580,438	S264*	probably null	Het
Olfr785	A	T	10: 129,409,785	T140S	possibly damaging	Het
Pcbp2	T	A	15: 102,473,347	V5E	probably damaging	Het
Pcp4l1	G	A	1: 171,174,465	A42V	possibly damaging	Het
Pgghg	A	T	7: 140,943,040	Y104F	probably benign	Het
Plscr2	T	C	9: 92,291,140		probably null	Het
Ppfibp1	C	T	6: 146,978,053	A25V	probably damaging	Het
Ptgfr	C	T	3: 151,835,397	G158D	probably benign	Het
Ptgs2	T	C	1: 150,102,695	F186S	probably damaging	Het
Ptpn14	A	G	1: 189,832,759	E181G	probably benign	Het
Rpgrip1	A	G	14: 52,131,216	K291E	possibly damaging	Het
Rtn4rl1	T	C	11: 75,194,296		probably null	Het
Sema3b	T	A	9: 107,600,942	M415L	probably benign	Het
Sh3bp4	A	G	1: 89,145,494	E688G	probably damaging	Het
Slco6c1	G	A	1: 97,128,162	R5C	possibly damaging	Het
Slmap	A	G	14: 26,460,072	F369L	possibly damaging	Het
Sphk2	T	C	7: 45,712,470	N181S	possibly damaging	Het
Sqor	A	G	2: 122,799,810	T235A	probably benign	Het
St13	A	G	15: 81,389,653	L80P	probably damaging	Het
St3gal6	A	G	16: 58,493,711	Y20H	probably benign	Het
Sun1	T	G	5: 139,248,484	Y899D	probably damaging	Het
Synm	C	T	7: 67,735,380	E845K	possibly damaging	Het
Tg	A	T	15: 66,694,784	D1227V	possibly damaging	Het
Thbs1	A	G	2: 118,114,957	N306D	possibly damaging	Het
Tmcc3	A	T	10: 94,578,495	N51Y	possibly damaging	Het
Usp4	A	G	9: 108,388,306	D856G	probably benign	Het
Vil1	G	A	1: 74,418,444	A79T	probably damaging	Het
Vmn1r119	T	A	7: 21,012,346	H37L	probably damaging	Het
Vmn2r110	A	T	17: 20,596,054	M69K	probably benign	Het
Wdr78	A	T	4: 103,050,187	I634N	possibly damaging	Het
Ywhaq	A	G	12: 21,394,981	L221P	probably damaging	Het
Zfp142	G	A	1: 74,570,008	Q1543*	probably null	Het
Zfp384	T	A	6: 125,024,830	M146K	possibly damaging	Het

Other mutations in Clcn4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00978:Clcn4	APN	7	7287673	missense	probably damaging	0.99
IGL01090:Clcn4	APN	7	7294036	missense	probably benign	0.01
IGL01650:Clcn4	APN	7	7284281	splice site	probably benign
IGL02404:Clcn4	APN	7	7287858	missense	probably benign	0.04
IGL02493:Clcn4	APN	7	7284244	missense	probably damaging	1.00
IGL02556:Clcn4	APN	7	7296066	missense	probably benign
IGL02661:Clcn4	APN	7	7291731	splice site	probably null
IGL02816:Clcn4	APN	7	7295088	missense	probably damaging	1.00
IGL02882:Clcn4	APN	7	7290465	missense	probably damaging	1.00
IGL03205:Clcn4	APN	7	7290420	missense	probably damaging	1.00
IGL03289:Clcn4	APN	7	7284258	missense	probably damaging	1.00
Delipidated	UTSW	7	7293061	missense	probably damaging	1.00
R0183:Clcn4	UTSW	7	7295091	nonsense	probably null
R0379:Clcn4	UTSW	7	7296792	missense	probably damaging	0.99
R0555:Clcn4	UTSW	7	7290504	missense	possibly damaging	0.65
R0890:Clcn4	UTSW	7	7288965	missense	possibly damaging	0.89
R1463:Clcn4	UTSW	7	7296764	nonsense	probably null
R1549:Clcn4	UTSW	7	7291682	missense	probably damaging	1.00
R1563:Clcn4	UTSW	7	7293982	missense	probably damaging	1.00
R1966:Clcn4	UTSW	7	7284185	makesense	probably null
R2764:Clcn4	UTSW	7	7296799	missense	possibly damaging	0.81
R2874:Clcn4	UTSW	7	7290521	missense	probably benign	0.33
R4023:Clcn4	UTSW	7	7290428	missense	probably damaging	1.00
R4024:Clcn4	UTSW	7	7290428	missense	probably damaging	1.00
R4152:Clcn4	UTSW	7	7294834	missense	probably benign	0.02
R4154:Clcn4	UTSW	7	7294834	missense	probably benign	0.02
R4298:Clcn4	UTSW	7	7296738	missense	possibly damaging	0.93
R4535:Clcn4	UTSW	7	7287814	missense	probably benign	0.01
R4574:Clcn4	UTSW	7	7287805	missense	probably benign	0.23
R4977:Clcn4	UTSW	7	7291437	missense	probably benign	0.00
R5158:Clcn4	UTSW	7	7291619	missense	possibly damaging	0.94
R5302:Clcn4	UTSW	7	7294051	missense	possibly damaging	0.95
R5369:Clcn4	UTSW	7	7296033	missense	probably benign	0.26
R5624:Clcn4	UTSW	7	7288944	missense	probably benign	0.35
R5626:Clcn4	UTSW	7	7289018	missense	probably damaging	1.00
R5723:Clcn4	UTSW	7	7291682	missense	probably damaging	1.00
R6154:Clcn4	UTSW	7	7291482	missense	probably benign	0.00
R6259:Clcn4	UTSW	7	7291530	missense	possibly damaging	0.92
R6396:Clcn4	UTSW	7	7294025	missense	probably damaging	1.00
R6783:Clcn4	UTSW	7	7299182	unclassified	probably benign
R7562:Clcn4	UTSW	7	7295082	missense	possibly damaging	0.92
R7586:Clcn4	UTSW	7	7293959	missense	probably benign	0.00
R7752:Clcn4	UTSW	7	7293937	missense	probably benign
R7860:Clcn4	UTSW	7	7293061	missense	probably damaging	1.00
R7872:Clcn4	UTSW	7	7287781	missense	probably benign
R7895:Clcn4	UTSW	7	7295168	missense	probably benign	0.26
R8069:Clcn4	UTSW	7	7296759	missense	probably damaging	0.99
R8083:Clcn4	UTSW	7	7291428	missense	possibly damaging	0.69
R9185:Clcn4	UTSW	7	7284198	missense	possibly damaging	0.74
R9281:Clcn4	UTSW	7	7291814	missense	probably benign	0.16
R9333:Clcn4	UTSW	7	7289193	missense	probably damaging	1.00
R9682:Clcn4	UTSW	7	7296798	missense	probably benign	0.02
X0019:Clcn4	UTSW	7	7291610	missense	probably damaging	1.00
Z1177:Clcn4	UTSW	7	7293040	nonsense	probably null
Z1177:Clcn4	UTSW	7	7294756	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- CAATCGTTGAAGAGCTCAGAGATG -3'
(R):5'- CCAAGGGAAAGGCTCTAAGC -3'

Sequencing Primer
(F):5'- CTCAGAGATGAGCTCACTGGTG -3'
(R):5'- ACCTTGTGGAGGTCATTC -3'

Posted On

2019-06-26