Mutagenetix > Incidental Mutation

Incidental Mutation 'R0638:Arfgap3'

56839

Institutional Source

Beutler Lab

Gene Symbol

Arfgap3

Ensembl Gene

ENSMUSG00000054277

Gene Name

ADP-ribosylation factor GTPase activating protein 3

Synonyms

1810035F16Rik, 1810004P07Rik, 9130416J18Rik, 0610009H19Rik

MMRRC Submission

038827-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.224) question?

Stock #

R0638 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

83183940-83234448 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to T at 83192389 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000154712 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067215] [ENSMUST00000067215] [ENSMUST00000226124] [ENSMUST00000226124] [ENSMUST00000226764]

AlphaFold

Q9D8S3

Predicted Effect

probably null
Transcript: ENSMUST00000067215

SMART Domains

Protein: ENSMUSP00000064893
Gene: ENSMUSG00000054277

Domain	Start	End	E-Value	Type
ArfGap	10	126	7.18e-44	SMART
Blast:ArfGap	160	200	2e-6	BLAST
low complexity region	220	237	N/A	INTRINSIC
low complexity region	348	362	N/A	INTRINSIC
low complexity region	459	466	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000067215

SMART Domains

Protein: ENSMUSP00000064893
Gene: ENSMUSG00000054277

Domain	Start	End	E-Value	Type
ArfGap	10	126	7.18e-44	SMART
Blast:ArfGap	160	200	2e-6	BLAST
low complexity region	220	237	N/A	INTRINSIC
low complexity region	348	362	N/A	INTRINSIC
low complexity region	459	466	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000226124

Predicted Effect

probably null
Transcript: ENSMUST00000226124

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000226411

Predicted Effect

probably benign
Transcript: ENSMUST00000226764

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000226816

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.1%
20x: 93.5%

Validation Efficiency

99% (76/77)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a GTPase-activating protein (GAP) that associates with the Golgi apparatus and regulates the early secretory pathway of proteins. The encoded protein promotes hydrolysis of ADP-ribosylation factor 1 (ARF1)-bound GTP, which is required for the dissociation of coat proteins from Golgi-derived membranes and vesicles. Dissociation of the coat proteins is a prerequisite for the fusion of these vesicles with target compartments. The activity of this protein is sensitive to phospholipids. Multiple transcript variants encoding different isoforms have been found for this gene. This gene was originally known as ARFGAP1, but that is now the name of a related but different gene. [provided by RefSeq, Nov 2008]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4932414N04Rik	C	A	2: 68,547,572 (GRCm39)	Q161K	probably benign	Het
Aatk	A	T	11: 119,900,748 (GRCm39)	L1216Q	probably damaging	Het
Aifm3	T	C	16: 17,321,535 (GRCm39)	F463L	possibly damaging	Het
Antxr2	C	T	5: 98,108,496 (GRCm39)	W338*	probably null	Het
Apc2	T	C	10: 80,140,801 (GRCm39)	S219P	probably damaging	Het
Arrdc5	A	G	17: 56,607,020 (GRCm39)	V75A	possibly damaging	Het
Atg16l2	A	T	7: 100,949,317 (GRCm39)		probably null	Het
Cacna1i	A	G	15: 80,265,281 (GRCm39)	N1511S	possibly damaging	Het
Cad	T	C	5: 31,235,032 (GRCm39)	Y2095H	probably damaging	Het
Chia1	T	C	3: 106,035,753 (GRCm39)		probably benign	Het
Crybg2	A	G	4: 133,801,765 (GRCm39)	D975G	probably damaging	Het
Dagla	T	C	19: 10,232,247 (GRCm39)	I480V	probably damaging	Het
Efl1	C	T	7: 82,301,095 (GRCm39)	T33I	probably damaging	Het
Esp36	A	G	17: 38,728,060 (GRCm39)	F74L	probably benign	Het
Faim	T	C	9: 98,874,149 (GRCm39)		probably benign	Het
Fam83h	G	T	15: 75,875,776 (GRCm39)	H520Q	probably benign	Het
Fbn2	A	T	18: 58,178,446 (GRCm39)	C1931S	probably damaging	Het
Frs3	A	G	17: 48,012,581 (GRCm39)	D96G	probably benign	Het
Gbp4	A	G	5: 105,269,706 (GRCm39)	M374T	probably damaging	Het
Gimap1	C	T	6: 48,718,359 (GRCm39)		probably benign	Het
Gm10010	A	G	6: 128,177,576 (GRCm39)		noncoding transcript	Het
Gm10355	T	C	3: 101,214,214 (GRCm39)		noncoding transcript	Het
Gmip	C	T	8: 70,264,095 (GRCm39)		probably benign	Het
Gpc2	A	T	5: 138,276,796 (GRCm39)	F110Y	possibly damaging	Het
Ifi44l	C	T	3: 151,468,396 (GRCm39)	V45M	probably benign	Het
Il15	T	C	8: 83,069,890 (GRCm39)	E58G	probably damaging	Het
Kat2b	T	C	17: 53,951,771 (GRCm39)		probably benign	Het
Kcnh7	C	A	2: 62,607,854 (GRCm39)	V576L	probably benign	Het
Lrrc66	T	A	5: 73,772,816 (GRCm39)		probably benign	Het
Mical1	A	G	10: 41,358,235 (GRCm39)	E416G	probably benign	Het
Mroh3	A	G	1: 136,118,740 (GRCm39)	Y526H	probably damaging	Het
Mtx2	T	C	2: 74,699,634 (GRCm39)		probably benign	Het
Naip6	A	T	13: 100,437,036 (GRCm39)	Y496N	probably benign	Het
Nfyc	A	G	4: 120,626,081 (GRCm39)	S73P	probably benign	Het
Or10v9	C	T	19: 11,832,487 (GRCm39)	V277M	probably damaging	Het
Or10v9	A	C	19: 11,832,732 (GRCm39)	V195G	probably damaging	Het
Or1e23	T	A	11: 73,407,750 (GRCm39)	I92F	probably damaging	Het
Or5ak25	A	G	2: 85,268,845 (GRCm39)	I219T	probably benign	Het
Or6c69b	T	A	10: 129,627,101 (GRCm39)	D119V	probably damaging	Het
P2ry14	A	G	3: 59,022,869 (GRCm39)	V206A	probably benign	Het
Polg	G	A	7: 79,109,896 (GRCm39)		probably benign	Het
Potefam1	T	C	2: 111,030,763 (GRCm39)	E382G	probably damaging	Het
Ptgs1	G	A	2: 36,130,868 (GRCm39)		probably benign	Het
Pus7l	A	G	15: 94,421,298 (GRCm39)	S671P	probably benign	Het
Ralgapa2	T	C	2: 146,184,112 (GRCm39)	T1547A	probably benign	Het
Rif1	T	C	2: 52,001,600 (GRCm39)	S1685P	probably benign	Het
Rnf213	T	C	11: 119,361,036 (GRCm39)	Y4452H	probably damaging	Het
Samd7	A	G	3: 30,810,670 (GRCm39)	D229G	probably benign	Het
Serpina3j	T	C	12: 104,281,078 (GRCm39)	S84P	possibly damaging	Het
Slc35d1	A	G	4: 103,070,441 (GRCm39)		probably benign	Het
Sorbs2	A	G	8: 46,249,347 (GRCm39)	D847G	probably damaging	Het
Sp110	A	C	1: 85,505,050 (GRCm39)	F434C	probably benign	Het
Steap4	T	C	5: 8,027,030 (GRCm39)		probably benign	Het
Tg	A	C	15: 66,589,057 (GRCm39)	T13P	probably damaging	Het
Timeless	T	A	10: 128,080,542 (GRCm39)	Y474*	probably null	Het
Tmem94	T	C	11: 115,682,886 (GRCm39)		probably null	Het
Trdmt1	G	A	2: 13,521,459 (GRCm39)		probably benign	Het
Trim23	T	C	13: 104,337,817 (GRCm39)	Y522H	probably benign	Het
Ttc13	A	T	8: 125,401,105 (GRCm39)	S624T	probably damaging	Het
Txnl1	A	G	18: 63,825,135 (GRCm39)		probably benign	Het
Unkl	T	C	17: 25,427,057 (GRCm39)		probably benign	Het
Usp54	T	A	14: 20,639,437 (GRCm39)		probably benign	Het
Vcam1	T	C	3: 115,910,908 (GRCm39)	K497E	possibly damaging	Het
Vmn1r49	C	A	6: 90,049,648 (GRCm39)	S118I	possibly damaging	Het
Vmn2r118	T	C	17: 55,915,466 (GRCm39)	K495E	probably benign	Het
Wrnip1	G	A	13: 33,005,073 (GRCm39)	C560Y	possibly damaging	Het
Xkr5	T	C	8: 18,983,563 (GRCm39)	R660G	probably benign	Het
Zfp280c	A	G	X: 47,637,580 (GRCm39)		probably benign	Het
Zfp707	G	A	15: 75,846,978 (GRCm39)	A291T	possibly damaging	Het

Other mutations in Arfgap3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00908:Arfgap3	APN	15	83,206,790 (GRCm39)	missense	probably benign	0.04
IGL01306:Arfgap3	APN	15	83,197,710 (GRCm39)	missense	possibly damaging	0.78
IGL01960:Arfgap3	APN	15	83,197,758 (GRCm39)	missense	probably benign	0.04
IGL03029:Arfgap3	APN	15	83,206,851 (GRCm39)	missense	probably damaging	1.00
IGL03036:Arfgap3	APN	15	83,191,127 (GRCm39)	missense	possibly damaging	0.91
IGL03328:Arfgap3	APN	15	83,227,282 (GRCm39)	missense	probably damaging	1.00
ANU23:Arfgap3	UTSW	15	83,197,710 (GRCm39)	missense	possibly damaging	0.78
R0103:Arfgap3	UTSW	15	83,206,922 (GRCm39)	splice site	probably benign
R0103:Arfgap3	UTSW	15	83,206,922 (GRCm39)	splice site	probably benign
R0125:Arfgap3	UTSW	15	83,227,340 (GRCm39)	missense	probably benign	0.01
R0243:Arfgap3	UTSW	15	83,214,714 (GRCm39)	splice site	probably benign
R0551:Arfgap3	UTSW	15	83,227,338 (GRCm39)	missense	probably damaging	1.00
R0557:Arfgap3	UTSW	15	83,187,386 (GRCm39)	missense	probably damaging	1.00
R1115:Arfgap3	UTSW	15	83,214,741 (GRCm39)	missense	probably benign	0.00
R1459:Arfgap3	UTSW	15	83,191,138 (GRCm39)	missense	probably benign	0.15
R1576:Arfgap3	UTSW	15	83,197,764 (GRCm39)	missense	possibly damaging	0.94
R1776:Arfgap3	UTSW	15	83,227,340 (GRCm39)	missense	probably benign	0.01
R1826:Arfgap3	UTSW	15	83,187,303 (GRCm39)	critical splice donor site	probably null
R2057:Arfgap3	UTSW	15	83,194,501 (GRCm39)	missense	probably benign
R2084:Arfgap3	UTSW	15	83,218,767 (GRCm39)	missense	probably damaging	0.96
R3407:Arfgap3	UTSW	15	83,206,808 (GRCm39)	missense	probably benign	0.00
R4072:Arfgap3	UTSW	15	83,187,330 (GRCm39)	missense	probably damaging	1.00
R4074:Arfgap3	UTSW	15	83,187,330 (GRCm39)	missense	probably damaging	1.00
R4206:Arfgap3	UTSW	15	83,206,869 (GRCm39)	missense	probably benign
R4449:Arfgap3	UTSW	15	83,218,759 (GRCm39)	missense	probably damaging	1.00
R5004:Arfgap3	UTSW	15	83,194,497 (GRCm39)	missense	possibly damaging	0.87
R5193:Arfgap3	UTSW	15	83,216,898 (GRCm39)	missense	probably benign	0.01
R5364:Arfgap3	UTSW	15	83,198,562 (GRCm39)	missense	probably damaging	1.00
R6142:Arfgap3	UTSW	15	83,234,328 (GRCm39)	missense	probably damaging	1.00
R6813:Arfgap3	UTSW	15	83,214,794 (GRCm39)	missense	probably benign	0.00
R7154:Arfgap3	UTSW	15	83,220,905 (GRCm39)	missense	probably damaging	1.00
R7422:Arfgap3	UTSW	15	83,191,150 (GRCm39)	missense	probably damaging	0.97
R7582:Arfgap3	UTSW	15	83,187,302 (GRCm39)	missense	possibly damaging	0.77
R7714:Arfgap3	UTSW	15	83,192,352 (GRCm39)	missense	probably benign	0.34
R8269:Arfgap3	UTSW	15	83,194,542 (GRCm39)	missense	probably benign	0.01
R9352:Arfgap3	UTSW	15	83,191,127 (GRCm39)	missense	possibly damaging	0.82
R9712:Arfgap3	UTSW	15	83,197,734 (GRCm39)	missense	probably benign	0.02
R9729:Arfgap3	UTSW	15	83,192,366 (GRCm39)	missense	probably damaging	1.00
Z1177:Arfgap3	UTSW	15	83,216,889 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- CTGATGAAAAGCAACTGCTGCCAC -3'
(R):5'- GAACCTGAGGTTGCCCCATAACTG -3'

Sequencing Primer
(F):5'- TCAAAAGCCACTGGCTGATG -3'
(R):5'- TTGCCCCATAACTGGGATG -3'

Posted On

2013-07-11