Mutagenetix > Incidental Mutation

Incidental Mutation 'R7103:Tom1l1'

568419

Institutional Source

Beutler Lab

Gene Symbol

Tom1l1

Ensembl Gene

ENSMUSG00000020541

Gene Name

target of myb1-like 1 (chicken)

Synonyms

2310045L10Rik, Srcasm

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.174) question?

Stock #

R7103 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

90643465-90688366 bp(-) (GRCm38)

Type of Mutation

splice site (3 bp from exon)

DNA Base Change (assembly)

T to C at 90671081 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000103501 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020849] [ENSMUST00000107868] [ENSMUST00000107869] [ENSMUST00000154599]

AlphaFold

Q923U0

Predicted Effect

probably null
Transcript: ENSMUST00000020849

SMART Domains

Protein: ENSMUSP00000020849
Gene: ENSMUSG00000020541

Domain	Start	End	E-Value	Type
VHS	15	150	7.37e-53	SMART
Pfam:GAT	212	288	5.8e-17	PFAM
low complexity region	340	349	N/A	INTRINSIC
low complexity region	409	416	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000107868

SMART Domains

Protein: ENSMUSP00000103500
Gene: ENSMUSG00000020541

Domain	Start	End	E-Value	Type
Pfam:VHS	1	73	4.2e-10	PFAM
Pfam:GAT	119	220	5.5e-29	PFAM
low complexity region	263	272	N/A	INTRINSIC
low complexity region	332	339	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000107869

SMART Domains

Protein: ENSMUSP00000103501
Gene: ENSMUSG00000020541

Domain	Start	End	E-Value	Type
VHS	15	152	7.23e-38	SMART
low complexity region	264	273	N/A	INTRINSIC
low complexity region	333	340	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000154599

SMART Domains

Protein: ENSMUSP00000123329
Gene: ENSMUSG00000020541

Domain	Start	End	E-Value	Type
VHS	15	150	7.37e-53	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

98% (61/62)

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts2	A	G	11: 50,737,354	T294A	probably damaging	Het
Adamtsl2	G	A	2: 27,107,461	V893I	probably damaging	Het
Amph	T	A	13: 19,149,738	D656E	probably benign	Het
Aoah	T	C	13: 21,023,315	F568S	probably damaging	Het
Atr	G	A	9: 95,865,372	G236S	probably damaging	Het
Brd3	T	A	2: 27,450,394	Q601L	probably damaging	Het
Ccar2	T	C	14: 70,141,977	E524G	probably damaging	Het
Cog2	T	C	8: 124,541,114		probably null	Het
Csnka2ip	C	A	16: 64,478,757	V415F	unknown	Het
Dmp1	A	T	5: 104,211,863	D135V	probably damaging	Het
Dtna	T	C	18: 23,653,379		probably null	Het
Endou	A	G	15: 97,718,929	S238P	probably damaging	Het
Ep400	T	A	5: 110,733,785	E779D	unknown	Het
Fcgbp	A	G	7: 28,084,962	E149G	probably benign	Het
G6pc	C	A	11: 101,374,587		probably null	Het
Gm13119	C	T	4: 144,363,727	R446C	probably benign	Het
Gm9573	C	A	17: 35,621,540	A585S	unknown	Het
Gmeb1	T	C	4: 132,234,868	H160R	probably damaging	Het
Gramd1b	T	C	9: 40,401,606	Y22C	unknown	Het
Hcrtr2	C	T	9: 76,254,511	G199D	probably benign	Het
Hoxb2	T	C	11: 96,353,621	F353L	possibly damaging	Het
Itpr2	C	A	6: 146,325,074	V1391F	probably damaging	Het
Jakmip2	T	A	18: 43,540,583		probably null	Het
Kcnmb4	T	C	10: 116,473,259	Y88C	possibly damaging	Het
Kif1a	T	C	1: 93,077,785	Y89C	probably damaging	Het
Kif23	T	A	9: 61,919,892	K892N	probably damaging	Het
Lama3	T	A	18: 12,531,879	S646T	probably benign	Het
Lig3	T	A	11: 82,797,312	M709K	probably benign	Het
Mgea5	G	A	19: 45,783,166		probably benign	Het
Mindy3	C	A	2: 12,401,074	A137S	possibly damaging	Het
Mis18bp1	T	C	12: 65,149,283	E569G	possibly damaging	Het
Misp	T	A	10: 79,827,165	L472Q	probably damaging	Het
Mrps5	A	T	2: 127,601,410	T303S	probably damaging	Het
Msh3	T	G	13: 92,274,800	I630L	probably benign	Het
Myo16	A	G	8: 10,569,673	Y1408C	unknown	Het
N4bp2	T	C	5: 65,806,846	V746A	probably benign	Het
Olfr1225	A	G	2: 89,170,483	I243T	possibly damaging	Het
Olfr1423	A	G	19: 12,036,388	M118T	probably damaging	Het
Olfr477	A	G	7: 107,990,598	T78A	possibly damaging	Het
Ostf1	C	T	19: 18,596,351	M44I	probably null	Het
Pik3c2b	T	G	1: 133,105,974	L1572R	probably damaging	Het
Pilra	T	C	5: 137,831,226	D192G	possibly damaging	Het
Pkhd1l1	A	G	15: 44,573,631	I3462V	probably benign	Het
Plekhh1	A	G	12: 79,066,655	D619G	probably benign	Het
Ptprb	T	A	10: 116,338,813	Y797N	probably damaging	Het
Rb1	T	C	14: 73,262,644	D521G	probably damaging	Het
Rnf17	T	G	14: 56,471,306	F728V	possibly damaging	Het
Slc16a4	T	C	3: 107,311,471	S463P	probably damaging	Het
Slc4a1	A	T	11: 102,353,867	I634K	probably damaging	Het
Slc4a1ap	T	C	5: 31,543,857	V634A	probably benign	Het
Spam1	A	G	6: 24,800,584	M441V	probably benign	Het
Teddm3	A	C	16: 21,152,979	L280*	probably null	Het
Tmem231	T	C	8: 111,918,885		probably null	Het
Topors	C	T	4: 40,261,706	G526D	probably benign	Het
Trpm6	A	T	19: 18,813,547	I649F	possibly damaging	Het
Ttc16	T	A	2: 32,774,428	M66L	probably benign	Het
Tubgcp6	A	G	15: 89,101,029	F1619L	probably damaging	Het
Vps13d	G	T	4: 145,115,492	A2619E		Het
Vps8	G	A	16: 21,526,441	R838H	probably damaging	Het
Vwde	T	A	6: 13,215,800	M86L	probably benign	Het
Zfp64	A	T	2: 168,926,437	D418E	probably benign	Het
Zfp952	C	T	17: 33,003,632	P362S	possibly damaging	Het
Zglp1	T	C	9: 21,066,072	E149G	probably benign	Het

Other mutations in Tom1l1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00595:Tom1l1	APN	11	90674740	missense	probably damaging	1.00
IGL01995:Tom1l1	APN	11	90649861	missense	probably damaging	0.96
R0057:Tom1l1	UTSW	11	90685149	splice site	probably benign
R1557:Tom1l1	UTSW	11	90656384	missense	possibly damaging	0.92
R1614:Tom1l1	UTSW	11	90683254	missense	probably damaging	1.00
R1616:Tom1l1	UTSW	11	90656351	missense	possibly damaging	0.92
R2165:Tom1l1	UTSW	11	90649895	splice site	probably benign
R2517:Tom1l1	UTSW	11	90671125	missense	possibly damaging	0.66
R3745:Tom1l1	UTSW	11	90657741	missense	probably benign	0.01
R4614:Tom1l1	UTSW	11	90671126	missense	probably damaging	1.00
R4694:Tom1l1	UTSW	11	90646849	missense	possibly damaging	0.86
R4755:Tom1l1	UTSW	11	90685116	missense	probably damaging	1.00
R5397:Tom1l1	UTSW	11	90661774	missense	probably benign	0.02
R6294:Tom1l1	UTSW	11	90661761	nonsense	probably null
R6733:Tom1l1	UTSW	11	90685060	critical splice donor site	probably null
R6911:Tom1l1	UTSW	11	90644161	splice site	probably null
R7489:Tom1l1	UTSW	11	90656359	missense	probably benign	0.00
R7696:Tom1l1	UTSW	11	90672915	missense	probably benign	0.02
R8244:Tom1l1	UTSW	11	90657821	missense	probably benign	0.13
R8787:Tom1l1	UTSW	11	90671105	missense	probably benign	0.00
R9205:Tom1l1	UTSW	11	90657818	missense	probably damaging	1.00
R9307:Tom1l1	UTSW	11	90649822	small deletion	probably benign
R9308:Tom1l1	UTSW	11	90649822	small deletion	probably benign
R9309:Tom1l1	UTSW	11	90649822	small deletion	probably benign

Predicted Primers

PCR Primer
(F):5'- GACCATTACTACTGCATCTTTGACAG -3'
(R):5'- GCCAAGTGTCTGTGTGTCAC -3'

Sequencing Primer
(F):5'- CAGTAAAGTATTGCAAATGCCCAG -3'
(R):5'- GTGTGTCACATTTAATGACTGAAGC -3'

Posted On

2019-07-17