Mutagenetix > Incidental Mutation

Incidental Mutation 'R7037:Tmem54'

568444

Institutional Source

Beutler Lab

Gene Symbol

Tmem54

Ensembl Gene

ENSMUSG00000028786

Gene Name

transmembrane protein 54

Synonyms

1810017F10Rik

MMRRC Submission

045137-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.061) question?

Stock #

R7037 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

128999341-129005419 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

T to A at 129004594 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000101679 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030572] [ENSMUST00000030575] [ENSMUST00000030575] [ENSMUST00000030575] [ENSMUST00000030577] [ENSMUST00000030577] [ENSMUST00000030577] [ENSMUST00000095807] [ENSMUST00000106064] [ENSMUST00000106064] [ENSMUST00000106064] [ENSMUST00000116442] [ENSMUST00000116444] [ENSMUST00000125931] [ENSMUST00000139450] [ENSMUST00000148979] [ENSMUST00000149763] [ENSMUST00000164649]

AlphaFold

Q9D7S1

Predicted Effect

probably benign
Transcript: ENSMUST00000030572

SMART Domains

Protein: ENSMUSP00000030572
Gene: ENSMUSG00000028785

Domain	Start	End	E-Value	Type
EFh	64	92	2.37e-3	SMART
EFh	100	128	3.1e-7	SMART
EFh	148	176	1.29e-4	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000030575

SMART Domains

Protein: ENSMUSP00000030575
Gene: ENSMUSG00000028786

Domain	Start	End	E-Value	Type
Pfam:BCLP	18	71	2.8e-23	PFAM
Pfam:BCLP	69	180	1.4e-43	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000030575

SMART Domains

Protein: ENSMUSP00000030575
Gene: ENSMUSG00000028786

Domain	Start	End	E-Value	Type
Pfam:BCLP	18	71	2.8e-23	PFAM
Pfam:BCLP	69	180	1.4e-43	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000030575

SMART Domains

Protein: ENSMUSP00000030575
Gene: ENSMUSG00000028786

Domain	Start	End	E-Value	Type
Pfam:BCLP	18	71	2.8e-23	PFAM
Pfam:BCLP	69	180	1.4e-43	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000030577

SMART Domains

Protein: ENSMUSP00000030577
Gene: ENSMUSG00000028786

Domain	Start	End	E-Value	Type
Pfam:BCLP	18	200	5e-80	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000030577

SMART Domains

Protein: ENSMUSP00000030577
Gene: ENSMUSG00000028786

Domain	Start	End	E-Value	Type
Pfam:BCLP	18	200	5e-80	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000030577

SMART Domains

Protein: ENSMUSP00000030577
Gene: ENSMUSG00000028786

Domain	Start	End	E-Value	Type
Pfam:BCLP	18	200	5e-80	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000095807

SMART Domains

Protein: ENSMUSP00000093486
Gene: ENSMUSG00000028785

Domain	Start	End	E-Value	Type
EFh	64	92	2.37e-3	SMART
EFh	100	128	3.1e-7	SMART
EFh	148	176	1.29e-4	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000106064

SMART Domains

Protein: ENSMUSP00000101679
Gene: ENSMUSG00000028786

Domain	Start	End	E-Value	Type
Pfam:BCLP	18	199	6.7e-66	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000106064

SMART Domains

Protein: ENSMUSP00000101679
Gene: ENSMUSG00000028786

Domain	Start	End	E-Value	Type
Pfam:BCLP	18	199	6.7e-66	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000106064

SMART Domains

Protein: ENSMUSP00000101679
Gene: ENSMUSG00000028786

Domain	Start	End	E-Value	Type
Pfam:BCLP	18	199	6.7e-66	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000116442

SMART Domains

Protein: ENSMUSP00000112143
Gene: ENSMUSG00000028785

Domain	Start	End	E-Value	Type
EFh	64	92	2.37e-3	SMART
EFh	100	128	3.1e-7	SMART
EFh	148	176	1.29e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000116444

SMART Domains

Protein: ENSMUSP00000112145
Gene: ENSMUSG00000028785

Domain	Start	End	E-Value	Type
EFh	64	92	2.37e-3	SMART
EFh	100	128	3.1e-7	SMART
EFh	148	176	1.29e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000125931

SMART Domains

Protein: ENSMUSP00000115031
Gene: ENSMUSG00000028785

Domain	Start	End	E-Value	Type
EFh	64	92	2.37e-3	SMART
EFh	100	128	3.1e-7	SMART
EFh	148	176	1.29e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000139450

SMART Domains

Protein: ENSMUSP00000119178
Gene: ENSMUSG00000028785

Domain	Start	End	E-Value	Type
EFh	64	92	2.37e-3	SMART
EFh	100	128	3.1e-7	SMART
EFh	148	176	1.29e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000148979

SMART Domains

Protein: ENSMUSP00000123006
Gene: ENSMUSG00000028786

Domain	Start	End	E-Value	Type
Pfam:BCLP	29	106	3.2e-35	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000149763

SMART Domains

Protein: ENSMUSP00000115619
Gene: ENSMUSG00000028785

Domain	Start	End	E-Value	Type
EFh	64	92	2.37e-3	SMART
EFh	100	128	3.1e-7	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000164649

SMART Domains

Protein: ENSMUSP00000129548
Gene: ENSMUSG00000028785

Domain	Start	End	E-Value	Type
EFh	64	92	2.37e-3	SMART
EFh	100	128	3.1e-7	SMART
EFh	148	176	1.29e-4	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

100% (70/70)

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsm3	A	T	7: 119,367,266 (GRCm39)	N33I	probably damaging	Het
Ahnak2	A	T	12: 112,740,712 (GRCm39)	V314D	probably damaging	Het
Arl14epl	T	G	18: 47,065,510 (GRCm39)	C92G	probably benign	Het
Atp6v1h	T	A	1: 5,220,215 (GRCm39)	M423K	possibly damaging	Het
Baiap3	G	A	17: 25,462,814 (GRCm39)	R1075C	probably benign	Het
Baz2b	C	T	2: 59,764,014 (GRCm39)		probably null	Het
Bicral	T	C	17: 47,135,560 (GRCm39)	H550R	probably benign	Het
C1rl	A	G	6: 124,485,598 (GRCm39)	Y323C	probably damaging	Het
Ccr9	T	A	9: 123,609,036 (GRCm39)	H239Q	possibly damaging	Het
Cdh16	T	A	8: 105,344,267 (GRCm39)	R91*	probably null	Het
Coro1c	A	G	5: 113,983,457 (GRCm39)	F357S	possibly damaging	Het
Cpsf4	G	A	5: 145,112,939 (GRCm39)	R141Q	possibly damaging	Het
Cryzl2	G	A	1: 157,298,318 (GRCm39)	V236I	probably damaging	Het
Cttnbp2	T	C	6: 18,435,117 (GRCm39)	E247G	probably damaging	Het
Dbr1	T	A	9: 99,458,621 (GRCm39)		probably null	Het
Dclk1	T	C	3: 55,370,469 (GRCm39)	S23P	probably damaging	Het
Dpyd	A	T	3: 118,692,938 (GRCm39)	I361F	probably benign	Het
Elac2	A	G	11: 64,874,537 (GRCm39)	E218G	probably benign	Het
Eml4	T	A	17: 83,732,756 (GRCm39)	D136E	probably benign	Het
Foxred1	A	T	9: 35,118,844 (GRCm39)	S223T	probably benign	Het
Garin5b	G	T	7: 4,761,584 (GRCm39)		probably benign	Het
Gask1a	G	T	9: 121,794,592 (GRCm39)	V249L	possibly damaging	Het
Gm11595	A	G	11: 99,663,474 (GRCm39)	C69R	unknown	Het
Gna14	A	T	19: 16,511,128 (GRCm39)	H59L		Het
H2-Ab1	T	A	17: 34,486,963 (GRCm39)	I239N	probably damaging	Het
Ints7	T	C	1: 191,351,717 (GRCm39)	S809P	probably benign	Het
Itgb4	T	A	11: 115,896,391 (GRCm39)	Y1379*	probably null	Het
Kank1	A	G	19: 25,407,705 (GRCm39)	D1233G	probably damaging	Het
Kif13a	C	T	13: 46,905,931 (GRCm39)	V671M	possibly damaging	Het
Lrrc66	A	T	5: 73,764,504 (GRCm39)	D846E	probably benign	Het
Lyst	A	G	13: 13,791,251 (GRCm39)	H38R	probably damaging	Het
Mc3r	T	C	2: 172,091,554 (GRCm39)	F259L	probably damaging	Het
Med25	A	G	7: 44,532,206 (GRCm39)	Y384H	probably damaging	Het
Met	A	T	6: 17,547,127 (GRCm39)		probably benign	Het
Mmp16	T	C	4: 18,116,148 (GRCm39)	V584A	possibly damaging	Het
Mrgprb3	A	G	7: 48,292,942 (GRCm39)	L203P	probably damaging	Het
Mus81	A	G	19: 5,536,108 (GRCm39)	L185P	probably damaging	Het
Naaa	A	G	5: 92,424,934 (GRCm39)	V75A	possibly damaging	Het
Obscn	T	A	11: 58,934,755 (GRCm39)	T5292S	probably damaging	Het
Obscn	T	C	11: 58,943,430 (GRCm39)	S4801G	probably damaging	Het
Or2ag19	T	C	7: 106,444,543 (GRCm39)	S242P	probably damaging	Het
Otof	T	C	5: 30,538,882 (GRCm39)	D1112G	probably benign	Het
Pals1	T	A	12: 78,843,973 (GRCm39)	I59N	probably damaging	Het
Pbx4	A	G	8: 70,317,525 (GRCm39)	R170G	probably damaging	Het
Pigt	CCAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGATCTGTAACCACAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGATCTGTAACCACAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGAT	CCAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGATCTGTAACCACAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGAT	2: 164,341,589 (GRCm39)		probably null	Het
Plce1	A	T	19: 38,690,461 (GRCm39)	D715V	probably damaging	Het
Pms1	T	C	1: 53,246,770 (GRCm39)	T311A	possibly damaging	Het
Popdc2	A	G	16: 38,194,629 (GRCm39)	D350G	probably damaging	Het
Prex1	A	G	2: 166,429,100 (GRCm39)	V661A	probably benign	Het
Ptbp2	A	G	3: 119,545,557 (GRCm39)	Y130H	probably damaging	Het
Rev3l	C	T	10: 39,727,971 (GRCm39)	R2707W	probably damaging	Het
Rpl37	G	A	15: 5,147,185 (GRCm39)	R75K	probably null	Het
Ryr3	T	A	2: 112,779,475 (GRCm39)	R259*	probably null	Het
Scai	A	T	2: 39,080,633 (GRCm39)	S8T	probably benign	Het
Scn4a	C	A	11: 106,211,726 (GRCm39)	L1430F	probably damaging	Het
Sema5a	A	G	15: 32,686,993 (GRCm39)	K1035R	probably damaging	Het
Siah3	A	G	14: 75,763,025 (GRCm39)	H92R	probably benign	Het
Smc4	G	A	3: 68,925,528 (GRCm39)	V342I	possibly damaging	Het
Spata31d1a	C	T	13: 59,848,138 (GRCm39)	C1330Y	possibly damaging	Het
St18	C	A	1: 6,873,260 (GRCm39)	H332N	possibly damaging	Het
Sycp1	T	A	3: 102,806,250 (GRCm39)	E480D	possibly damaging	Het
Tex14	A	T	11: 87,388,741 (GRCm39)	I323F	probably damaging	Het
Tm7sf2	A	T	19: 6,114,107 (GRCm39)		probably null	Het
Tmem241	G	T	18: 12,246,463 (GRCm39)	H62Q	probably benign	Het
Tomm34	A	G	2: 163,912,398 (GRCm39)	L39P	probably damaging	Het
Triml2	T	A	8: 43,646,573 (GRCm39)	V354D	probably damaging	Het
Usp19	T	C	9: 108,374,157 (GRCm39)	I738T	possibly damaging	Het
Utp25	A	C	1: 192,803,031 (GRCm39)		probably null	Het
Utrn	T	A	10: 12,702,514 (GRCm39)		probably null	Het
Zfp1005	G	T	2: 150,108,376 (GRCm39)	V46F	possibly damaging	Het

Other mutations in Tmem54

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02471:Tmem54	APN	4	129,002,111 (GRCm39)	missense	probably benign	0.00
IGL02475:Tmem54	APN	4	129,002,073 (GRCm39)	missense	probably damaging	1.00
IGL03107:Tmem54	APN	4	129,004,705 (GRCm39)	missense	probably damaging	1.00
R3804:Tmem54	UTSW	4	129,002,013 (GRCm39)	missense	probably benign	0.01
R4156:Tmem54	UTSW	4	129,004,504 (GRCm39)	missense	probably damaging	1.00
R4157:Tmem54	UTSW	4	129,004,504 (GRCm39)	missense	probably damaging	1.00
R4664:Tmem54	UTSW	4	129,004,704 (GRCm39)	missense	possibly damaging	0.95
R4959:Tmem54	UTSW	4	129,002,073 (GRCm39)	missense	probably damaging	1.00
R6699:Tmem54	UTSW	4	129,005,118 (GRCm39)	missense	probably benign	0.07
R9056:Tmem54	UTSW	4	129,002,120 (GRCm39)	missense	probably benign	0.16

Predicted Primers

PCR Primer
(F):5'- CCAAGGGTAGAGCACTATTGGC -3'
(R):5'- ATGTGAGGCCCTGTTCAGAAG -3'

Sequencing Primer
(F):5'- GCGGCCTGTACTTTTGAGAACC -3'
(R):5'- CCCTGTTCAGAAGGGGTGAG -3'

Posted On

2019-07-31