Mutagenetix > Incidental Mutation

Incidental Mutation 'R7121:Neto2'

568579

Institutional Source

Beutler Lab

Gene Symbol

Neto2

Ensembl Gene

ENSMUSG00000036902

Gene Name

neuropilin (NRP) and tolloid (TLL)-like 2

Synonyms

MMRRC Submission

045210-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.183) question?

Stock #

R7121 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

85636588-85700924 bp(-) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

T to C at 85670391 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000150062 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000109686] [ENSMUST00000209479] [ENSMUST00000216286]

AlphaFold

Q8BNJ6

Predicted Effect

probably null
Transcript: ENSMUST00000109686

SMART Domains

Protein: ENSMUSP00000105308
Gene: ENSMUSG00000036902

Domain	Start	End	E-Value	Type
transmembrane domain	38	60	N/A	INTRINSIC
CUB	80	194	2.56e-40	SMART
CUB	205	320	9.11e-5	SMART
LDLa	324	361	5.73e-5	SMART
transmembrane domain	374	396	N/A	INTRINSIC
coiled coil region	432	460	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000209479

Predicted Effect

probably null
Transcript: ENSMUST00000216286

Meta Mutation Damage Score

0.9756

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

99% (71/72)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a predicted transmembrane protein containing two extracellular CUB domains followed by a low-density lipoprotein class A (LDLa) domain. A similar gene in rats encodes a protein that modulates glutamate signaling in the brain by regulating kainate receptor function. Expression of this gene may be a biomarker for proliferating infantile hemangiomas. A pseudogene of this gene is located on the long arm of chromosome 8. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jan 2011]
PHENOTYPE: Mice homozygous for a null mutation show normal brain morphology and kainate receptor mediated excitatory postsynaptic currents. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933411K16Rik	C	T	19: 42,052,673	A81V	probably benign	Het
Abcc9	A	T	6: 142,689,127	L137*	probably null	Het
Akap10	A	G	11: 61,886,698		probably null	Het
Alms1	T	A	6: 85,624,622	Y1683N	probably damaging	Het
Atl1	A	G	12: 69,931,634	S127G	probably damaging	Het
Cadm1	G	A	9: 47,799,410	V204M	probably damaging	Het
Cbr3	T	A	16: 93,690,550	I207N	probably damaging	Het
Ccdc148	A	T	2: 58,827,567	Y475N	probably damaging	Het
Ccdc33	A	T	9: 58,080,884	S144T	probably benign	Het
Ceacam5	C	A	7: 17,745,537	A193E	probably benign	Het
Chd2	T	C	7: 73,469,670	D1042G	probably benign	Het
Chmp5	A	T	4: 40,952,217		probably null	Het
Clca1	T	A	3: 145,011,806	N467I	probably damaging	Het
D130040H23Rik	T	C	8: 69,302,279	V112A	probably damaging	Het
Dbh	A	T	2: 27,168,306	D162V	probably damaging	Het
Dnah12	G	A	14: 26,778,912		probably null	Het
Dnm2	C	T	9: 21,474,566	T295I	probably benign	Het
Faiml	A	C	9: 99,234,393	D81E	probably benign	Het
Fer1l4	T	A	2: 156,044,557	Y720F	probably benign	Het
Fn1	A	C	1: 71,600,538		probably benign	Het
Ftsj3	T	C	11: 106,252,297	E397G	probably damaging	Het
Gm16506	T	C	14: 43,727,360	K42E		Het
Gpr179	A	G	11: 97,334,730	S2200P	probably benign	Het
Gusb	T	C	5: 130,000,043	D202G	probably benign	Het
Hspe1	A	G	1: 55,089,151	E35G	probably damaging	Het
Kptn	T	A	7: 16,123,098	H170Q	probably damaging	Het
Lama3	G	A	18: 12,462,782	A923T	probably benign	Het
Lmo7	T	A	14: 101,887,035	I432K	probably damaging	Het
Maneal	G	A	4: 124,857,112	P284S	probably benign	Het
Mrgbp	A	G	2: 180,582,889	T28A	probably benign	Het
Myo1h	T	C	5: 114,338,229	V493A		Het
Naxd	T	C	8: 11,506,745	L122P	probably damaging	Het
Obscn	T	A	11: 59,013,252	R7299*	probably null	Het
Odf2l	G	A	3: 145,139,820	V363I	possibly damaging	Het
Olfr117	T	C	17: 37,659,808	H175R	probably damaging	Het
Olfr1186	A	T	2: 88,525,826	D81V	probably damaging	Het
Olfr1458	T	A	19: 13,103,173	I44F	probably benign	Het
Olfr69	A	T	7: 103,767,733	Y221*	probably null	Het
Olfr721-ps1	A	G	14: 14,407,998	T257A	possibly damaging	Het
Otud3	G	A	4: 138,896,756	P325L	probably benign	Het
Palb2	T	C	7: 122,124,834	N564S	probably benign	Het
Pcnt	A	G	10: 76,427,927	V401A	possibly damaging	Het
Plcd4	G	A	1: 74,565,365	E767K	probably benign	Het
Ppp3ca	T	C	3: 136,868,626	F95S	probably damaging	Het
Prkar2a	A	G	9: 108,692,622	T56A	probably benign	Het
Psma2	T	A	13: 14,625,230	D186E	probably benign	Het
Psmd11	T	A	11: 80,438,273	Y72*	probably null	Het
Ror1	G	A	4: 100,302,945	D53N	probably benign	Het
Rubcn	C	T	16: 32,836,469	R527Q	probably damaging	Het
Sgca	G	A	11: 94,969,547	P255S	possibly damaging	Het
Skint11	A	T	4: 114,227,796	R167S	probably benign	Het
Slco5a1	A	G	1: 12,990,437	V20A	probably benign	Het
Snai2	T	C	16: 14,707,106	S159P	probably benign	Het
Taar2	T	G	10: 23,940,827	S88R	probably damaging	Het
Tacc3	T	A	5: 33,667,165	N378K	possibly damaging	Het
Tek	A	G	4: 94,811,410	K342E	probably benign	Het
Tm9sf3	G	T	19: 41,245,505	S198*	probably null	Het
Tmbim4	T	A	10: 120,215,609	F56I	possibly damaging	Het
Tsen34	T	A	7: 3,694,987	S85T	probably benign	Het
Ttc27	C	A	17: 74,747,715	Q339K	probably benign	Het
Ubap2	G	T	4: 41,205,550	P636T	probably benign	Het
Ubr1	G	A	2: 120,875,498	L1495F	probably benign	Het
Vsig10	T	C	5: 117,343,902	S386P	probably damaging	Het
Wnk2	C	A	13: 49,147,177	R19L	probably benign	Het
Wsb2	T	C	5: 117,370,879	L126P	probably damaging	Het
Xylb	A	G	9: 119,382,292	I402V	probably benign	Het
Yrdc	A	G	4: 124,850,955	S61G	probably benign	Het
Zbtb3	A	G	19: 8,803,407	D128G	probably damaging	Het
Zfp423	C	T	8: 87,780,861	G952R	probably damaging	Het
Zfp646	A	G	7: 127,879,772	T374A	possibly damaging	Het

Other mutations in Neto2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01705:Neto2	APN	8	85641003	missense	probably damaging	1.00
IGL01938:Neto2	APN	8	85690855	missense	probably benign	0.00
IGL02238:Neto2	APN	8	85669663	missense	probably damaging	0.99
IGL02605:Neto2	APN	8	85663435	splice site	probably benign
IGL02813:Neto2	APN	8	85690886	missense	probably benign
R0138:Neto2	UTSW	8	85641044	missense	possibly damaging	0.72
R1934:Neto2	UTSW	8	85670404	missense	possibly damaging	0.96
R2402:Neto2	UTSW	8	85690912	missense	probably benign	0.00
R2423:Neto2	UTSW	8	85669767	missense	probably damaging	1.00
R3821:Neto2	UTSW	8	85663295	nonsense	probably null
R3822:Neto2	UTSW	8	85663295	nonsense	probably null
R3883:Neto2	UTSW	8	85663265	missense	probably damaging	1.00
R3939:Neto2	UTSW	8	85674118	missense	probably damaging	0.99
R3940:Neto2	UTSW	8	85674118	missense	probably damaging	0.99
R3941:Neto2	UTSW	8	85674118	missense	probably damaging	0.99
R4433:Neto2	UTSW	8	85641083	missense	probably damaging	1.00
R4668:Neto2	UTSW	8	85641062	missense	probably damaging	1.00
R4675:Neto2	UTSW	8	85669704	missense	probably damaging	1.00
R4908:Neto2	UTSW	8	85669764	missense	probably damaging	0.99
R5459:Neto2	UTSW	8	85670483	missense	probably benign	0.35
R5471:Neto2	UTSW	8	85640760	missense	probably benign	0.41
R5544:Neto2	UTSW	8	85647877	missense	possibly damaging	0.94
R5571:Neto2	UTSW	8	85640544	missense	probably damaging	1.00
R6083:Neto2	UTSW	8	85640585	missense	probably benign	0.00
R6339:Neto2	UTSW	8	85640558	missense	probably benign	0.33
R6381:Neto2	UTSW	8	85642509	missense	probably damaging	0.99
R6572:Neto2	UTSW	8	85670404	missense	possibly damaging	0.96
R6593:Neto2	UTSW	8	85669546	missense	probably damaging	1.00
R6662:Neto2	UTSW	8	85663215	missense	probably damaging	1.00
R6881:Neto2	UTSW	8	85640556	missense	probably damaging	1.00
R6950:Neto2	UTSW	8	85670443	missense	probably damaging	1.00
R7754:Neto2	UTSW	8	85669700	missense	probably damaging	0.98
R7755:Neto2	UTSW	8	85669656	missense	probably damaging	1.00
R8682:Neto2	UTSW	8	85640666	missense	probably benign	0.01
R9326:Neto2	UTSW	8	85642434	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GTGCAAAGGCCCAGTAAGTAC -3'
(R):5'- CAGAGTAGGCAATTGTTTTAGAGTG -3'

Sequencing Primer
(F):5'- AGACATCCCTTATCAGAGACGTTTC -3'
(R):5'- AATTGTTTTAGAGTGTTGGAGGAAAG -3'

Posted On

2019-08-26