Incidental Mutation 'R7335:Cenpc1'
ID 569424
Institutional Source Beutler Lab
Gene Symbol Cenpc1
Ensembl Gene ENSMUSG00000029253
Gene Name centromere protein C1
Synonyms
MMRRC Submission 045372-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R7335 (G1)
Quality Score 225.009
Status Validated
Chromosome 5
Chromosomal Location 86159883-86213442 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 86182212 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Lysine to Asparagine at position 557 (K557N)
Ref Sequence ENSEMBL: ENSMUSP00000031170 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000031170]
AlphaFold P49452
Predicted Effect possibly damaging
Transcript: ENSMUST00000031170
AA Change: K557N

PolyPhen 2 Score 0.948 (Sensitivity: 0.79; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000031170
Gene: ENSMUSG00000029253
AA Change: K557N

DomainStartEndE-ValueType
Pfam:CENP_C_N 7 121 6.1e-42 PFAM
Pfam:CENP_C_N 115 261 2.6e-46 PFAM
Pfam:CENP-C_mid 265 519 5.4e-100 PFAM
PDB:4INM|W 700 724 5e-9 PDB
Pfam:CENP-C_C 819 903 3.9e-28 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.1%
Validation Efficiency 100% (56/56)
MGI Phenotype FUNCTION: This gene encodes a centromeric protein component of a nucleosome-associated complex that plays a central role in kinetochore protein assembly, mitotic progression and chromosome segregation. The human ortholog encodes a protein with DNA-binding activity, that associates constitutively to kinetochores throughout the cell cycle, as part of a prekinetochore complex, together with centromeric protein-A and centromeric protein-B. Multiple pseudogenes of this gene have been identified. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2016]
PHENOTYPE: Homozygous mutation of this gene results in early embryonic lethality and mitotic abnormalities. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 57 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adamts2 A G 11: 50,493,093 (GRCm39) S35G probably benign Het
Adcy6 G T 15: 98,501,757 (GRCm39) Q286K probably benign Het
Agrn A G 4: 156,260,989 (GRCm39) S676P probably damaging Het
Arpp21 A T 9: 112,005,319 (GRCm39) probably null Het
Bmal2 A G 6: 146,711,217 (GRCm39) M74V probably benign Het
C1rb A T 6: 124,552,238 (GRCm39) I319F possibly damaging Het
C2cd3 T C 7: 100,071,810 (GRCm39) V629A Het
Cacna1i T G 15: 80,259,776 (GRCm39) F1287C probably damaging Het
Catspere2 A G 1: 177,926,074 (GRCm39) I247V probably benign Het
Cd101 C G 3: 100,926,045 (GRCm39) A229P probably benign Het
Cdh23 T C 10: 60,140,895 (GRCm39) D3151G probably damaging Het
Col6a4 G A 9: 105,954,091 (GRCm39) T416M possibly damaging Het
Cyp2c67 A T 19: 39,628,451 (GRCm39) C164* probably null Het
Dop1b A G 16: 93,544,396 (GRCm39) E179G probably benign Het
Duoxa2 A T 2: 122,131,821 (GRCm39) Y170F possibly damaging Het
Fras1 A G 5: 96,884,829 (GRCm39) K2569R possibly damaging Het
Fsip2 C A 2: 82,813,462 (GRCm39) H3260Q probably benign Het
Gm3402 T C 5: 146,452,043 (GRCm39) I121T probably benign Het
Herc3 T A 6: 58,853,773 (GRCm39) H606Q possibly damaging Het
Hmcn2 T C 2: 31,282,169 (GRCm39) V1927A possibly damaging Het
Hnf4g A G 3: 3,717,924 (GRCm39) H347R possibly damaging Het
Hs3st3a1 A G 11: 64,411,163 (GRCm39) T234A probably benign Het
Hyal1 G T 9: 107,456,359 (GRCm39) V379L probably benign Het
Ighv1-19 A G 12: 114,672,571 (GRCm39) probably benign Het
Iqcc T A 4: 129,510,501 (GRCm39) Q338L not run Het
Kdm5b T C 1: 134,488,177 (GRCm39) V34A probably damaging Het
Lgals4 T C 7: 28,540,571 (GRCm39) F225L probably benign Het
Lmtk3 C T 7: 45,444,581 (GRCm39) T1088I unknown Het
Magel2 A T 7: 62,030,524 (GRCm39) S1143C unknown Het
Mapk4 A T 18: 74,070,338 (GRCm39) L185Q possibly damaging Het
Mtcl2 T C 2: 156,872,925 (GRCm39) Q862R possibly damaging Het
Ncam1 A G 9: 49,418,211 (GRCm39) S1030P Het
Nynrin A T 14: 56,101,371 (GRCm39) T347S probably benign Het
Pak5 T C 2: 135,940,219 (GRCm39) T532A probably damaging Het
Pcdhb15 A G 18: 37,607,389 (GRCm39) E207G probably damaging Het
Pde6h T C 6: 136,940,211 (GRCm39) W66R probably damaging Het
Pmaip1 T C 18: 66,591,885 (GRCm39) probably null Het
Prkd3 A G 17: 79,261,995 (GRCm39) F774S probably damaging Het
Prox1 T A 1: 189,894,042 (GRCm39) R134S possibly damaging Het
Ptpn22 T A 3: 103,793,335 (GRCm39) H495Q probably damaging Het
Ptprj G T 2: 90,271,126 (GRCm39) Q1201K probably benign Het
Rp1l1 A G 14: 64,269,447 (GRCm39) S1678G probably benign Het
Sez6l G T 5: 112,724,678 (GRCm39) probably null Het
Sgcg T A 14: 61,477,816 (GRCm39) Y91F probably damaging Het
Skint2 C T 4: 112,481,415 (GRCm39) L93F probably damaging Het
Slc22a22 A T 15: 57,126,771 (GRCm39) D99E probably benign Het
Slco3a1 A G 7: 73,934,090 (GRCm39) I694T probably damaging Het
Smurf2 A T 11: 106,736,911 (GRCm39) I305N possibly damaging Het
Stac3 T A 10: 127,340,769 (GRCm39) V178D probably benign Het
Suclg2 G A 6: 95,543,444 (GRCm39) A329V probably damaging Het
Suclg2 T A 6: 95,543,441 (GRCm39) N330I probably damaging Het
Tas2r118 C T 6: 23,969,749 (GRCm39) C104Y probably damaging Het
Tom1l2 T G 11: 60,135,991 (GRCm39) E327D probably benign Het
Trit1 T C 4: 122,910,572 (GRCm39) M57T possibly damaging Het
Vav1 G A 17: 57,603,720 (GRCm39) S134N probably benign Het
Vmn2r82 T C 10: 79,214,722 (GRCm39) L235P probably damaging Het
Zfp735 T A 11: 73,602,379 (GRCm39) V441E possibly damaging Het
Other mutations in Cenpc1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00921:Cenpc1 APN 5 86,185,387 (GRCm39) missense probably benign 0.02
IGL01287:Cenpc1 APN 5 86,170,313 (GRCm39) nonsense probably null
IGL01363:Cenpc1 APN 5 86,194,390 (GRCm39) nonsense probably null
IGL01720:Cenpc1 APN 5 86,193,284 (GRCm39) missense possibly damaging 0.84
IGL02217:Cenpc1 APN 5 86,177,059 (GRCm39) splice site probably benign
IGL02665:Cenpc1 APN 5 86,194,262 (GRCm39) missense probably benign 0.01
IGL03022:Cenpc1 APN 5 86,170,234 (GRCm39) splice site probably benign
IGL03162:Cenpc1 APN 5 86,185,764 (GRCm39) missense possibly damaging 0.94
IGL03343:Cenpc1 APN 5 86,164,181 (GRCm39) missense probably damaging 0.96
R0130:Cenpc1 UTSW 5 86,194,405 (GRCm39) missense probably benign 0.07
R0193:Cenpc1 UTSW 5 86,180,262 (GRCm39) missense probably benign 0.30
R0314:Cenpc1 UTSW 5 86,185,230 (GRCm39) missense probably benign 0.20
R0932:Cenpc1 UTSW 5 86,185,459 (GRCm39) missense possibly damaging 0.94
R0973:Cenpc1 UTSW 5 86,185,767 (GRCm39) missense probably damaging 1.00
R0973:Cenpc1 UTSW 5 86,185,767 (GRCm39) missense probably damaging 1.00
R0974:Cenpc1 UTSW 5 86,185,767 (GRCm39) missense probably damaging 1.00
R1240:Cenpc1 UTSW 5 86,183,369 (GRCm39) missense probably benign 0.32
R1454:Cenpc1 UTSW 5 86,161,369 (GRCm39) missense possibly damaging 0.71
R1677:Cenpc1 UTSW 5 86,209,857 (GRCm39) splice site probably benign
R2044:Cenpc1 UTSW 5 86,185,614 (GRCm39) missense probably benign 0.01
R2256:Cenpc1 UTSW 5 86,164,062 (GRCm39) missense probably damaging 1.00
R3085:Cenpc1 UTSW 5 86,185,476 (GRCm39) missense probably benign 0.01
R4516:Cenpc1 UTSW 5 86,195,446 (GRCm39) missense possibly damaging 0.72
R4518:Cenpc1 UTSW 5 86,195,446 (GRCm39) missense possibly damaging 0.72
R4561:Cenpc1 UTSW 5 86,195,491 (GRCm39) missense probably damaging 1.00
R4827:Cenpc1 UTSW 5 86,182,290 (GRCm39) missense possibly damaging 0.67
R4864:Cenpc1 UTSW 5 86,193,180 (GRCm39) missense probably damaging 1.00
R5222:Cenpc1 UTSW 5 86,185,606 (GRCm39) missense possibly damaging 0.77
R5707:Cenpc1 UTSW 5 86,183,293 (GRCm39) missense possibly damaging 0.82
R5920:Cenpc1 UTSW 5 86,168,769 (GRCm39) missense probably benign 0.00
R5999:Cenpc1 UTSW 5 86,160,122 (GRCm39) missense probably damaging 1.00
R6073:Cenpc1 UTSW 5 86,206,012 (GRCm39) critical splice donor site probably null
R6209:Cenpc1 UTSW 5 86,181,509 (GRCm39) missense probably benign 0.02
R6244:Cenpc1 UTSW 5 86,194,244 (GRCm39) missense probably damaging 1.00
R6278:Cenpc1 UTSW 5 86,183,394 (GRCm39) missense probably damaging 0.97
R6395:Cenpc1 UTSW 5 86,183,429 (GRCm39) missense probably benign 0.14
R7269:Cenpc1 UTSW 5 86,180,277 (GRCm39) missense probably benign 0.12
R7269:Cenpc1 UTSW 5 86,161,366 (GRCm39) missense probably damaging 1.00
R7378:Cenpc1 UTSW 5 86,194,358 (GRCm39) missense probably benign 0.02
R7968:Cenpc1 UTSW 5 86,181,551 (GRCm39) missense probably benign
R8380:Cenpc1 UTSW 5 86,194,275 (GRCm39) missense probably benign 0.00
R8780:Cenpc1 UTSW 5 86,164,209 (GRCm39) missense probably damaging 1.00
R8859:Cenpc1 UTSW 5 86,160,153 (GRCm39) missense probably benign 0.02
R8982:Cenpc1 UTSW 5 86,195,533 (GRCm39) missense probably damaging 1.00
R9157:Cenpc1 UTSW 5 86,166,316 (GRCm39) missense probably benign 0.00
RF018:Cenpc1 UTSW 5 86,193,228 (GRCm39) missense possibly damaging 0.94
Predicted Primers PCR Primer
(F):5'- GCCAAACCAGCAAATTCTGAATGAG -3'
(R):5'- GGTGTCAGTATTCAGTGAGCC -3'

Sequencing Primer
(F):5'- CCAGCAAATTCTGAATGAGAAAAAG -3'
(R):5'- GTCAGTATTCAGTGAGCCAGATC -3'
Posted On 2019-09-13