Mutagenetix > Incidental Mutation

Incidental Mutation 'R7345:Pole'

570136

Institutional Source

Beutler Lab

Gene Symbol

Pole

Ensembl Gene

ENSMUSG00000007080

Gene Name

polymerase (DNA directed), epsilon

Synonyms

pol-epsilon

MMRRC Submission

045379-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7345 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

110286306-110337474 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 110303903 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 870 (N870K)

Ref Sequence

ENSEMBL: ENSMUSP00000007296 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000007296]

AlphaFold

Q9WVF7

Predicted Effect

possibly damaging
Transcript: ENSMUST00000007296
AA Change: N870K

PolyPhen 2 Score 0.817 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000007296
Gene: ENSMUSG00000007080
AA Change: N870K

Domain	Start	End	E-Value	Type
POLBc	267	870	9.42e-97	SMART
Blast:POLBc	903	970	1e-28	BLAST
Blast:POLBc	1014	1073	2e-22	BLAST
Blast:POLBc	1195	1266	7e-21	BLAST
low complexity region	1275	1294	N/A	INTRINSIC
Blast:DUF1744	1401	1430	2e-7	BLAST
DUF1744	1524	1924	1.9e-236	SMART
coiled coil region	1936	1963	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 98.9%

Validation Efficiency

100% (55/55)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the catalytic subunit of DNA polymerase epsilon. The enzyme is involved in DNA repair and chromosomal DNA replication. Mutations in this gene have been associated with colorectal cancer 12 and facial dysmorphism, immunodeficiency, livedo, and short stature. [provided by RefSeq, Sep 2013]
PHENOTYPE: Mice homozygous for a knock-in allele exhibit increased incidence of tumors and premature death. Mice homozygous for a transgenic gene disruption exhibit embryonic lethality at E7. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Anks3	A	G	16: 4,955,910 (GRCm38)	M174T	possibly damaging	Het
Arhgap23	G	A	11: 97,466,478 (GRCm38)	R934Q	possibly damaging	Het
Atad5	T	C	11: 80,096,006 (GRCm38)	S640P	probably damaging	Het
B3galnt2	C	T	13: 13,980,480 (GRCm38)		probably null	Het
B430305J03Rik	T	C	3: 61,364,118 (GRCm38)	S69G	unknown	Het
C87499	T	C	4: 88,628,179 (GRCm38)	K309E	possibly damaging	Het
Cd163	A	T	6: 124,318,938 (GRCm38)	N747I	possibly damaging	Het
Cep126	A	G	9: 8,099,816 (GRCm38)	S906P	probably damaging	Het
Cyp4f39	G	A	17: 32,486,779 (GRCm38)	G318R	probably damaging	Het
D630003M21Rik	C	T	2: 158,217,209 (GRCm38)	G257D	probably damaging	Het
Dcaf10	T	C	4: 45,342,583 (GRCm38)	L139P	probably damaging	Het
Dcc	A	G	18: 71,378,824 (GRCm38)	V840A	probably benign	Het
Dnhd1	A	T	7: 105,703,967 (GRCm38)	I2776L	probably benign	Het
Fam166b	T	C	4: 43,428,022 (GRCm38)	D145G	possibly damaging	Het
Fbxo24	G	T	5: 137,621,261 (GRCm38)	F234L	probably damaging	Het
Gm21190	T	C	5: 15,527,904 (GRCm38)		probably null	Het
Grhl3	C	T	4: 135,546,246 (GRCm38)	R565Q	probably damaging	Het
Gtf3c1	A	T	7: 125,645,670 (GRCm38)	Y1731N	probably damaging	Het
Il1a	C	A	2: 129,304,773 (GRCm38)	R133S	probably benign	Het
Ipo4	C	T	14: 55,635,531 (GRCm38)	R23Q	probably benign	Het
Klc3	G	A	7: 19,394,889 (GRCm38)	T481M	probably benign	Het
Map2k6	A	T	11: 110,492,908 (GRCm38)	I127F		Het
Mapk8	A	T	14: 33,408,111 (GRCm38)	N63K	probably damaging	Het
Med13l	T	C	5: 118,742,760 (GRCm38)	W1306R	probably damaging	Het
Megf6	C	A	4: 154,267,315 (GRCm38)	Q1162K	probably benign	Het
Myo5b	A	G	18: 74,708,024 (GRCm38)	E992G	possibly damaging	Het
Ndst4	C	T	3: 125,714,659 (GRCm38)	T291M	probably benign	Het
Nek10	T	A	14: 14,955,503 (GRCm38)	F838L	probably benign	Het
Nrm	A	G	17: 35,864,584 (GRCm38)	H194R	probably damaging	Het
Nup188	T	C	2: 30,340,601 (GRCm38)	S1384P	probably benign	Het
Olfml2a	C	A	2: 38,960,127 (GRCm38)	D618E	probably damaging	Het
Olfr466	A	C	13: 65,152,743 (GRCm38)	N173T	possibly damaging	Het
Olfr506	C	T	7: 108,613,063 (GRCm38)	T252I	probably benign	Het
Olfr937	A	G	9: 39,060,579 (GRCm38)	L29P	probably damaging	Het
Olfr938	G	A	9: 39,078,334 (GRCm38)	S137F	probably damaging	Het
P2ry1	T	C	3: 61,003,674 (GRCm38)	F78S	possibly damaging	Het
Pcdhb18	T	C	18: 37,491,923 (GRCm38)	F769L	probably benign	Het
Poc5	A	G	13: 96,396,796 (GRCm38)	E144G	probably damaging	Het
Polr2b	T	C	5: 77,349,119 (GRCm38)	F1159L	possibly damaging	Het
Rubcnl	A	G	14: 75,042,353 (GRCm38)	Y392C	probably benign	Het
Sec31a	T	C	5: 100,385,270 (GRCm38)	T539A	probably damaging	Het
Serpinh1	A	C	7: 99,346,356 (GRCm38)	S340A	probably damaging	Het
Slc1a5	T	A	7: 16,796,160 (GRCm38)		probably null	Het
Soat2	A	G	15: 102,162,578 (GRCm38)	D469G	probably benign	Het
Speg	T	C	1: 75,384,835 (GRCm38)	L70P	probably damaging	Het
Spred2	T	C	11: 19,924,958 (GRCm38)		probably null	Het
Stac2	A	C	11: 98,042,613 (GRCm38)	S168A	probably damaging	Het
Stx1a	T	A	5: 135,037,188 (GRCm38)	D31E	probably benign	Het
Timeless	C	T	10: 128,249,754 (GRCm38)	T885M	probably damaging	Het
Tmem94	G	T	11: 115,786,256 (GRCm38)	R118L	possibly damaging	Het
Tsen34	T	C	7: 3,695,615 (GRCm38)	Y253H	probably damaging	Het
Unc13b	T	C	4: 43,173,966 (GRCm38)	V1598A	unknown	Het
Zfat	A	T	15: 68,105,043 (GRCm38)	Y1086N	probably damaging	Het
Zfp551	G	A	7: 12,416,595 (GRCm38)	H296Y	probably benign	Het

Other mutations in Pole

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00418:Pole	APN	5	110,303,565 (GRCm38)	splice site	probably benign
IGL00475:Pole	APN	5	110,291,096 (GRCm38)	nonsense	probably null
IGL00837:Pole	APN	5	110,302,009 (GRCm38)	missense	possibly damaging	0.91
IGL00976:Pole	APN	5	110,323,572 (GRCm38)	missense	probably benign	0.00
IGL01081:Pole	APN	5	110,337,240 (GRCm38)	missense	possibly damaging	0.92
IGL01503:Pole	APN	5	110,303,884 (GRCm38)	missense	probably damaging	1.00
IGL01640:Pole	APN	5	110,298,266 (GRCm38)	missense	probably null	0.08
IGL01987:Pole	APN	5	110,337,232 (GRCm38)	missense	probably benign	0.01
IGL02429:Pole	APN	5	110,299,800 (GRCm38)	missense	probably benign
IGL02733:Pole	APN	5	110,312,728 (GRCm38)	splice site	probably benign
IGL03102:Pole	APN	5	110,297,073 (GRCm38)	missense	probably damaging	1.00
IGL03157:Pole	APN	5	110,293,753 (GRCm38)	missense	probably benign
IGL03186:Pole	APN	5	110,299,920 (GRCm38)	critical splice donor site	probably null
IGL03271:Pole	APN	5	110,318,319 (GRCm38)	missense	probably benign
IGL03351:Pole	APN	5	110,301,998 (GRCm38)	splice site	probably benign
IGL03408:Pole	APN	5	110,294,560 (GRCm38)	missense	probably damaging	1.00
IGL03410:Pole	APN	5	110,324,559 (GRCm38)	missense	probably benign
ANU74:Pole	UTSW	5	110,289,370 (GRCm38)	missense	probably benign	0.44
PIT4495001:Pole	UTSW	5	110,303,914 (GRCm38)	missense	probably damaging	1.00
R0053:Pole	UTSW	5	110,293,340 (GRCm38)	missense	probably damaging	1.00
R0053:Pole	UTSW	5	110,293,340 (GRCm38)	missense	probably damaging	1.00
R0124:Pole	UTSW	5	110,303,992 (GRCm38)	missense	probably damaging	0.96
R0145:Pole	UTSW	5	110,324,425 (GRCm38)	missense	probably damaging	0.99
R0523:Pole	UTSW	5	110,303,593 (GRCm38)	missense	probably damaging	0.96
R0590:Pole	UTSW	5	110,317,926 (GRCm38)	missense	probably benign
R0625:Pole	UTSW	5	110,325,550 (GRCm38)	missense	possibly damaging	0.50
R0707:Pole	UTSW	5	110,298,988 (GRCm38)	missense	probably damaging	1.00
R1160:Pole	UTSW	5	110,295,253 (GRCm38)	missense	possibly damaging	0.85
R1320:Pole	UTSW	5	110,309,129 (GRCm38)	frame shift	probably null
R1384:Pole	UTSW	5	110,323,664 (GRCm38)	missense	possibly damaging	0.81
R1626:Pole	UTSW	5	110,293,369 (GRCm38)	missense	probably benign	0.25
R1643:Pole	UTSW	5	110,317,845 (GRCm38)	missense	probably damaging	1.00
R1655:Pole	UTSW	5	110,335,922 (GRCm38)	missense	probably damaging	1.00
R1668:Pole	UTSW	5	110,297,369 (GRCm38)	missense	probably damaging	1.00
R1783:Pole	UTSW	5	110,297,430 (GRCm38)	missense	probably damaging	1.00
R1843:Pole	UTSW	5	110,330,835 (GRCm38)	critical splice donor site	probably null
R1853:Pole	UTSW	5	110,306,853 (GRCm38)	missense	possibly damaging	0.95
R1867:Pole	UTSW	5	110,334,197 (GRCm38)	missense	probably benign	0.08
R1874:Pole	UTSW	5	110,323,664 (GRCm38)	missense	possibly damaging	0.81
R1891:Pole	UTSW	5	110,332,542 (GRCm38)	missense	probably damaging	1.00
R1928:Pole	UTSW	5	110,327,778 (GRCm38)	missense	probably benign
R2073:Pole	UTSW	5	110,325,551 (GRCm38)	missense	probably damaging	0.99
R2341:Pole	UTSW	5	110,330,963 (GRCm38)	missense	possibly damaging	0.67
R2448:Pole	UTSW	5	110,297,092 (GRCm38)	missense	probably damaging	1.00
R2504:Pole	UTSW	5	110,290,502 (GRCm38)	splice site	probably null
R3053:Pole	UTSW	5	110,289,795 (GRCm38)	missense	probably damaging	1.00
R3892:Pole	UTSW	5	110,336,439 (GRCm38)	missense	probably damaging	1.00
R3964:Pole	UTSW	5	110,312,782 (GRCm38)	missense	probably damaging	1.00
R3965:Pole	UTSW	5	110,312,782 (GRCm38)	missense	probably damaging	1.00
R4374:Pole	UTSW	5	110,337,205 (GRCm38)	missense	possibly damaging	0.89
R4376:Pole	UTSW	5	110,337,205 (GRCm38)	missense	possibly damaging	0.89
R4377:Pole	UTSW	5	110,337,205 (GRCm38)	missense	possibly damaging	0.89
R4520:Pole	UTSW	5	110,297,924 (GRCm38)	missense	probably damaging	1.00
R4670:Pole	UTSW	5	110,306,387 (GRCm38)	missense	probably benign	0.01
R4778:Pole	UTSW	5	110,330,832 (GRCm38)	missense	probably benign	0.00
R4887:Pole	UTSW	5	110,324,753 (GRCm38)	missense	probably damaging	0.99
R4898:Pole	UTSW	5	110,290,224 (GRCm38)	critical splice acceptor site	probably null
R5184:Pole	UTSW	5	110,294,934 (GRCm38)	missense	possibly damaging	0.91
R5359:Pole	UTSW	5	110,332,488 (GRCm38)	missense	probably benign	0.03
R5483:Pole	UTSW	5	110,294,568 (GRCm38)	missense	probably damaging	1.00
R5529:Pole	UTSW	5	110,332,466 (GRCm38)	missense	probably benign	0.20
R5576:Pole	UTSW	5	110,312,065 (GRCm38)	nonsense	probably null
R5817:Pole	UTSW	5	110,312,972 (GRCm38)	missense	probably damaging	1.00
R5877:Pole	UTSW	5	110,332,463 (GRCm38)	missense	probably benign
R5956:Pole	UTSW	5	110,337,287 (GRCm38)	unclassified	probably benign
R5990:Pole	UTSW	5	110,302,144 (GRCm38)	missense	probably damaging	1.00
R6019:Pole	UTSW	5	110,324,515 (GRCm38)	missense	probably benign	0.01
R6019:Pole	UTSW	5	110,324,514 (GRCm38)	missense	probably benign	0.01
R6093:Pole	UTSW	5	110,312,090 (GRCm38)	missense	probably benign	0.01
R6376:Pole	UTSW	5	110,336,374 (GRCm38)	missense	probably damaging	0.99
R6494:Pole	UTSW	5	110,324,722 (GRCm38)	missense	possibly damaging	0.86
R6535:Pole	UTSW	5	110,324,807 (GRCm38)	missense	probably damaging	1.00
R6723:Pole	UTSW	5	110,323,616 (GRCm38)	missense	probably benign	0.11
R6757:Pole	UTSW	5	110,303,610 (GRCm38)	missense	probably damaging	1.00
R6930:Pole	UTSW	5	110,293,290 (GRCm38)	missense	probably benign	0.01
R6988:Pole	UTSW	5	110,329,583 (GRCm38)	missense	probably damaging	0.97
R6992:Pole	UTSW	5	110,332,499 (GRCm38)	missense	probably damaging	0.99
R7067:Pole	UTSW	5	110,334,218 (GRCm38)	missense	probably damaging	1.00
R7097:Pole	UTSW	5	110,325,102 (GRCm38)	splice site	probably null
R7122:Pole	UTSW	5	110,325,102 (GRCm38)	splice site	probably null
R7202:Pole	UTSW	5	110,297,107 (GRCm38)	missense	possibly damaging	0.94
R7340:Pole	UTSW	5	110,334,464 (GRCm38)	missense	probably benign	0.06
R7509:Pole	UTSW	5	110,330,705 (GRCm38)	start gained	probably benign
R7557:Pole	UTSW	5	110,312,994 (GRCm38)	missense	probably damaging	1.00
R7740:Pole	UTSW	5	110,331,041 (GRCm38)	missense	probably benign	0.00
R7792:Pole	UTSW	5	110,297,466 (GRCm38)	splice site	probably null
R7832:Pole	UTSW	5	110,317,797 (GRCm38)	missense	probably benign	0.00
R7849:Pole	UTSW	5	110,332,548 (GRCm38)	missense	probably benign	0.04
R7852:Pole	UTSW	5	110,306,829 (GRCm38)	missense	probably damaging	1.00
R7960:Pole	UTSW	5	110,289,861 (GRCm38)	missense	possibly damaging	0.81
R8001:Pole	UTSW	5	110,312,734 (GRCm38)	missense	probably damaging	1.00
R8266:Pole	UTSW	5	110,294,920 (GRCm38)	missense	probably damaging	1.00
R8510:Pole	UTSW	5	110,334,446 (GRCm38)	missense	probably damaging	0.99
R8793:Pole	UTSW	5	110,297,748 (GRCm38)	missense	probably damaging	1.00
R8835:Pole	UTSW	5	110,306,909 (GRCm38)	missense	probably damaging	1.00
R8863:Pole	UTSW	5	110,289,367 (GRCm38)	missense	possibly damaging	0.94
R8929:Pole	UTSW	5	110,297,788 (GRCm38)	missense	probably damaging	0.98
R8968:Pole	UTSW	5	110,312,083 (GRCm38)	missense	possibly damaging	0.78
R8992:Pole	UTSW	5	110,323,622 (GRCm38)	missense	possibly damaging	0.88
R9018:Pole	UTSW	5	110,289,809 (GRCm38)	missense	probably benign	0.37
R9177:Pole	UTSW	5	110,332,422 (GRCm38)	missense	probably benign	0.04
R9250:Pole	UTSW	5	110,299,821 (GRCm38)	missense	possibly damaging	0.88
R9262:Pole	UTSW	5	110,325,557 (GRCm38)	missense	probably damaging	1.00
R9262:Pole	UTSW	5	110,325,556 (GRCm38)	missense	probably damaging	0.99
R9367:Pole	UTSW	5	110,297,089 (GRCm38)	missense	probably damaging	0.99
R9383:Pole	UTSW	5	110,291,026 (GRCm38)	missense	possibly damaging	0.61
R9626:Pole	UTSW	5	110,312,093 (GRCm38)	missense	possibly damaging	0.68
R9676:Pole	UTSW	5	110,295,565 (GRCm38)	missense	probably benign	0.00
R9720:Pole	UTSW	5	110,337,043 (GRCm38)	missense	probably benign	0.01
R9787:Pole	UTSW	5	110,318,000 (GRCm38)	critical splice donor site	probably null
R9794:Pole	UTSW	5	110,318,335 (GRCm38)	missense	probably benign	0.01
X0064:Pole	UTSW	5	110,317,904 (GRCm38)	nonsense	probably null
Y5377:Pole	UTSW	5	110,294,891 (GRCm38)	critical splice acceptor site	probably null
Y5380:Pole	UTSW	5	110,294,891 (GRCm38)	critical splice acceptor site	probably null
Z1088:Pole	UTSW	5	110,327,865 (GRCm38)	missense	possibly damaging	0.66
Z1177:Pole	UTSW	5	110,297,009 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACTGATTGAGCAGATCGGGTG -3'
(R):5'- AGTCTTACCATGACAGCTGAGG -3'

Sequencing Primer
(F):5'- CAGATCGGGTGAGTGTGACC -3'
(R):5'- TTACCATGACAGCTGAGGAAATTAAG -3'

Posted On

2019-09-13