Mutagenetix > Incidental Mutation

Incidental Mutation 'R7353:Nrd1'

570721

Institutional Source

Beutler Lab

Gene Symbol

Nrd1

Ensembl Gene

ENSMUSG00000053510

Gene Name

nardilysin, N-arginine dibasic convertase, NRD convertase 1

Synonyms

NRD-C

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.164) question?

Stock #

R7353 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

109000655-109061777 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 109039749 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 522 (T522A)

Ref Sequence

ENSEMBL: ENSMUSP00000068328 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065977] [ENSMUST00000102736] [ENSMUST00000106644] [ENSMUST00000125645]

AlphaFold

Q8BHG1

Predicted Effect

probably damaging
Transcript: ENSMUST00000065977
AA Change: T522A

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000068328
Gene: ENSMUSG00000053510
AA Change: T522A

Domain	Start	End	E-Value	Type
low complexity region	139	165	N/A	INTRINSIC
low complexity region	172	209	N/A	INTRINSIC
Pfam:Peptidase_M16	210	348	1.1e-43	PFAM
Pfam:Peptidase_M16_C	373	559	2.3e-22	PFAM
Pfam:Peptidase_M16_C	849	1032	1.5e-14	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000102736
AA Change: T478A

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000099797
Gene: ENSMUSG00000053510
AA Change: T478A

Domain	Start	End	E-Value	Type
low complexity region	139	165	N/A	INTRINSIC
low complexity region	172	209	N/A	INTRINSIC
Pfam:Peptidase_M16	210	348	1.4e-43	PFAM
Pfam:Peptidase_M16_C	400	515	1.1e-9	PFAM
Pfam:Peptidase_M16_C	805	988	2e-14	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000106644
AA Change: T590A

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000102255
Gene: ENSMUSG00000053510
AA Change: T590A

Domain	Start	End	E-Value	Type
low complexity region	139	165	N/A	INTRINSIC
coiled coil region	187	225	N/A	INTRINSIC
Pfam:Peptidase_M16	281	416	1e-41	PFAM
Pfam:Peptidase_M16_C	441	627	2.2e-23	PFAM
Pfam:Peptidase_M16_M	631	913	1e-91	PFAM
Pfam:Peptidase_M16_C	917	1100	6e-15	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000125645
AA Change: T274A

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000122808
Gene: ENSMUSG00000053510
AA Change: T274A

Domain	Start	End	E-Value	Type
Pfam:Peptidase_M16	1	100	6.4e-27	PFAM
Pfam:Peptidase_M16_C	125	311	1.9e-23	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.9%
20x: 99.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a zinc-dependent endopeptidase that cleaves peptide substrates at the N-terminus of arginine residues in dibasic moieties and is a member of the peptidase M16 family. This protein interacts with heparin-binding EGF-like growth factor and plays a role in cell migration and proliferation. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2011]
PHENOTYPE: Mice homozygous for a knock-out allele mostly die within 48 hours of birth with surviving mice exhibiting cortical thinning, enlarged lateral ventricles, hypomyelination, reduced grip strength, impaired coordination, and impaired spatial working memory. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3110070M22Rik	C	A	13: 119,488,178	A11S	unknown	Het
Aadacl4	G	A	4: 144,617,920	V89I	probably damaging	Het
Abcc9	T	A	6: 142,601,005	I1369F	probably damaging	Het
Adgrf3	T	A	5: 30,198,497	I427F	probably damaging	Het
Alox12e	T	C	11: 70,321,435	Y139C	probably damaging	Het
Arhgef2	T	A	3: 88,635,686	V397E	possibly damaging	Het
Arhgef28	T	A	13: 98,075,202	Y91F	probably damaging	Het
Bcar3	A	G	3: 122,512,692	T454A	probably benign	Het
Bicc1	G	T	10: 70,947,900	T469K	probably benign	Het
Boc	C	T	16: 44,485,737	V1070M	unknown	Het
Ccdc88a	T	A	11: 29,463,368	N635K	probably benign	Het
Ccr2	T	C	9: 124,106,756	S358P	probably damaging	Het
Ccser2	T	C	14: 36,941,143	Q28R	possibly damaging	Het
Cenpf	T	A	1: 189,654,138	K1982*	probably null	Het
Csn1s2a	A	T	5: 87,785,302	I137F	possibly damaging	Het
Cttnbp2	A	T	6: 18,375,944	I1532K	possibly damaging	Het
Dnajc13	C	A	9: 104,230,031	R304L	possibly damaging	Het
Dopey1	T	A	9: 86,512,859	M664K	probably damaging	Het
Emilin3	T	A	2: 160,908,821	E336V	probably damaging	Het
Eml5	A	G	12: 98,825,424	Y63H		Het
Fbxo41	G	T	6: 85,479,976	R404S	possibly damaging	Het
Gm8897	G	A	5: 11,416,436	D7N	possibly damaging	Het
Gpr155	A	T	2: 73,367,491	Y456*	probably null	Het
Gpr156	T	A	16: 37,992,161	N286K	probably damaging	Het
Kcna5	A	G	6: 126,534,845	S107P	probably benign	Het
Kcne2	A	T	16: 92,296,822	H79L	possibly damaging	Het
Kcnh4	T	A	11: 100,757,199	M113L	probably benign	Het
Lad1	T	A	1: 135,827,775	L263Q	probably damaging	Het
Lctl	G	A	9: 64,126,967	G296D	probably damaging	Het
Lmtk3	A	T	7: 45,788,000	I205F	possibly damaging	Het
Magel2	G	T	7: 62,379,331	R661L	unknown	Het
Mcm10	G	A	2: 5,007,109	P180S	possibly damaging	Het
Mia3	G	T	1: 183,327,392	A446D		Het
N4bp2	G	A	5: 65,806,371	V588M	probably benign	Het
Naip6	C	T	13: 100,299,751	V755M	probably benign	Het
Neurl1a	T	C	19: 47,240,660	V213A	probably damaging	Het
Ntng1	T	C	3: 110,135,447	Q21R	probably damaging	Het
Nup160	T	C	2: 90,703,952	L707S	probably damaging	Het
Oas2	A	T	5: 120,738,522	V452D	probably damaging	Het
Olfr3	A	G	2: 36,812,903	L63P	probably damaging	Het
Olfr350	A	T	2: 36,850,069	M8L	probably benign	Het
Olfr351	G	A	2: 36,859,668	R227*	probably null	Het
Olfr519	A	G	7: 108,894,222	F67L	probably damaging	Het
Olfr593	A	C	7: 103,212,309	T150P	probably damaging	Het
Plekhg1	A	T	10: 3,964,327	T1405S		Het
Pnrc1	G	A	4: 33,248,300	P33L	probably damaging	Het
Prkag2	A	T	5: 24,880,686	V312E	possibly damaging	Het
Rps17	T	A	7: 81,344,345	E76V	possibly damaging	Het
Rsph10b	G	A	5: 143,967,220	G672S	possibly damaging	Het
Slc2a13	T	C	15: 91,321,604	N460S	probably benign	Het
Slco2b1	A	T	7: 99,690,557	C56S	possibly damaging	Het
Spn	T	C	7: 127,137,006	T110A	probably benign	Het
Sult2a8	T	C	7: 14,413,715	N217S	possibly damaging	Het
Tbx2	C	A	11: 85,833,489	T128N	probably damaging	Het
Tecpr2	A	T	12: 110,967,844	M1313L	probably benign	Het
Tmc2	G	A	2: 130,196,577		probably null	Het
Tstd1	G	T	1: 171,419,955	A69S	probably damaging	Het
Txnrd3	A	G	6: 89,661,585	D252G	probably benign	Het
Ulk2	T	C	11: 61,819,348	N345D	probably damaging	Het
Unc13c	T	C	9: 73,574,073	D1694G	probably benign	Het
Vill	T	C	9: 119,065,493	V406A	probably damaging	Het
Vmn2r115	T	C	17: 23,345,913	V258A	possibly damaging	Het
Vmn2r82	T	A	10: 79,396,618	M817K	probably benign	Het
Xpnpep3	T	C	15: 81,430,887	S263P	probably benign	Het
Zfp980	A	G	4: 145,702,144	D481G	probably benign	Het
Zmpste24	A	G	4: 121,095,581	S81P	probably damaging	Het
Znrf4	A	G	17: 56,512,169	V46A	probably benign	Het

Other mutations in Nrd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00577:Nrd1	APN	4	109046687	unclassified	probably benign
IGL00857:Nrd1	APN	4	109054002	missense	probably damaging	1.00
IGL01417:Nrd1	APN	4	109000830	utr 5 prime	probably benign
IGL01457:Nrd1	APN	4	109047660	missense	probably benign	0.03
IGL02112:Nrd1	APN	4	109027432	splice site	probably benign
IGL02279:Nrd1	APN	4	109024194	splice site	probably benign
IGL02332:Nrd1	APN	4	109000988	missense	probably damaging	0.99
IGL02890:Nrd1	APN	4	109053919	missense	possibly damaging	0.55
IGL03179:Nrd1	APN	4	109046691	unclassified	probably benign
PIT4354001:Nrd1	UTSW	4	109054025	critical splice donor site	probably null
R0551:Nrd1	UTSW	4	109047708	missense	probably damaging	1.00
R1468:Nrd1	UTSW	4	109016668	missense	probably benign	0.01
R1468:Nrd1	UTSW	4	109016668	missense	probably benign	0.01
R1990:Nrd1	UTSW	4	109039775	nonsense	probably null
R4391:Nrd1	UTSW	4	109046644	missense	probably damaging	1.00
R4994:Nrd1	UTSW	4	109046612	missense	probably benign
R5164:Nrd1	UTSW	4	109039717	missense	probably damaging	0.99
R5229:Nrd1	UTSW	4	109049108	missense	probably damaging	1.00
R5387:Nrd1	UTSW	4	109039762	missense	probably damaging	1.00
R5530:Nrd1	UTSW	4	109047609	missense	probably damaging	0.96
R5672:Nrd1	UTSW	4	109038045	nonsense	probably null
R5990:Nrd1	UTSW	4	109019071	missense	probably damaging	1.00
R6018:Nrd1	UTSW	4	109013747	missense	probably benign	0.01
R6106:Nrd1	UTSW	4	109044585	missense	probably damaging	0.99
R6114:Nrd1	UTSW	4	109044585	missense	probably damaging	0.99
R6140:Nrd1	UTSW	4	109049111	missense	probably damaging	0.97
R6285:Nrd1	UTSW	4	109038006	missense	probably damaging	0.99
R6824:Nrd1	UTSW	4	109043425	missense	probably damaging	1.00
R7019:Nrd1	UTSW	4	109028802	missense	probably benign	0.33
R7735:Nrd1	UTSW	4	109037985	missense	probably damaging	1.00
R8261:Nrd1	UTSW	4	109016679	missense	possibly damaging	0.67
R8340:Nrd1	UTSW	4	109001154	missense	probably damaging	1.00
R8352:Nrd1	UTSW	4	109019063	missense	probably damaging	0.98
R8368:Nrd1	UTSW	4	109013698	missense	probably benign	0.02
R8452:Nrd1	UTSW	4	109019063	missense	probably damaging	0.98
R9350:Nrd1	UTSW	4	109032461	missense	possibly damaging	0.93
R9428:Nrd1	UTSW	4	109000924	missense	probably damaging	0.99
R9516:Nrd1	UTSW	4	109044666	missense	probably benign
R9526:Nrd1	UTSW	4	109058636	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- GTTTACATCAAAAGCTCAGGTTCC -3'
(R):5'- TTGGCAGCCTGAAGTCAGAG -3'

Sequencing Primer
(F):5'- CAAAAGCTCAGGTTCCAAAATTTTAC -3'
(R):5'- CAGCCTGAAGTCAGAGTTGTAC -3'

Posted On

2019-09-13