Mutagenetix > Incidental Mutation

Incidental Mutation 'R7353:Nrdc'

570721

Institutional Source

Beutler Lab

Gene Symbol

Nrdc

Ensembl Gene

ENSMUSG00000053510

Gene Name

nardilysin convertase

Synonyms

NRD-C, Nrd1

MMRRC Submission

045439-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.165) question?

Stock #

R7353 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

108857852-108918974 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 108896946 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 522 (T522A)

Ref Sequence

ENSEMBL: ENSMUSP00000068328 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065977] [ENSMUST00000102736] [ENSMUST00000106644] [ENSMUST00000125645]

AlphaFold

Q8BHG1

Predicted Effect

probably damaging
Transcript: ENSMUST00000065977
AA Change: T522A

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000068328
Gene: ENSMUSG00000053510
AA Change: T522A

Domain	Start	End	E-Value	Type
low complexity region	139	165	N/A	INTRINSIC
low complexity region	172	209	N/A	INTRINSIC
Pfam:Peptidase_M16	210	348	1.1e-43	PFAM
Pfam:Peptidase_M16_C	373	559	2.3e-22	PFAM
Pfam:Peptidase_M16_C	849	1032	1.5e-14	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000102736
AA Change: T478A

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000099797
Gene: ENSMUSG00000053510
AA Change: T478A

Domain	Start	End	E-Value	Type
low complexity region	139	165	N/A	INTRINSIC
low complexity region	172	209	N/A	INTRINSIC
Pfam:Peptidase_M16	210	348	1.4e-43	PFAM
Pfam:Peptidase_M16_C	400	515	1.1e-9	PFAM
Pfam:Peptidase_M16_C	805	988	2e-14	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000106644
AA Change: T590A

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000102255
Gene: ENSMUSG00000053510
AA Change: T590A

Domain	Start	End	E-Value	Type
low complexity region	139	165	N/A	INTRINSIC
coiled coil region	187	225	N/A	INTRINSIC
Pfam:Peptidase_M16	281	416	1e-41	PFAM
Pfam:Peptidase_M16_C	441	627	2.2e-23	PFAM
Pfam:Peptidase_M16_M	631	913	1e-91	PFAM
Pfam:Peptidase_M16_C	917	1100	6e-15	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000125645
AA Change: T274A

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000122808
Gene: ENSMUSG00000053510
AA Change: T274A

Domain	Start	End	E-Value	Type
Pfam:Peptidase_M16	1	100	6.4e-27	PFAM
Pfam:Peptidase_M16_C	125	311	1.9e-23	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.9%
20x: 99.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a zinc-dependent endopeptidase that cleaves peptide substrates at the N-terminus of arginine residues in dibasic moieties and is a member of the peptidase M16 family. This protein interacts with heparin-binding EGF-like growth factor and plays a role in cell migration and proliferation. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2011]
PHENOTYPE: Mice homozygous for a knock-out allele mostly die within 48 hours of birth with surviving mice exhibiting cortical thinning, enlarged lateral ventricles, hypomyelination, reduced grip strength, impaired coordination, and impaired spatial working memory. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3110070M22Rik	C	A	13: 119,624,714 (GRCm39)	A11S	unknown	Het
Aadacl4	G	A	4: 144,344,490 (GRCm39)	V89I	probably damaging	Het
Abcc9	T	A	6: 142,546,731 (GRCm39)	I1369F	probably damaging	Het
Adgrf3	T	A	5: 30,403,495 (GRCm39)	I427F	probably damaging	Het
Alox12e	T	C	11: 70,212,261 (GRCm39)	Y139C	probably damaging	Het
Arhgef2	T	A	3: 88,542,993 (GRCm39)	V397E	possibly damaging	Het
Arhgef28	T	A	13: 98,211,710 (GRCm39)	Y91F	probably damaging	Het
Bcar3	A	G	3: 122,306,341 (GRCm39)	T454A	probably benign	Het
Bicc1	G	T	10: 70,783,730 (GRCm39)	T469K	probably benign	Het
Boc	C	T	16: 44,306,100 (GRCm39)	V1070M	unknown	Het
Ccdc88a	T	A	11: 29,413,368 (GRCm39)	N635K	probably benign	Het
Ccr2	T	C	9: 123,906,793 (GRCm39)	S358P	probably damaging	Het
Ccser2	T	C	14: 36,663,100 (GRCm39)	Q28R	possibly damaging	Het
Cenpf	T	A	1: 189,386,335 (GRCm39)	K1982*	probably null	Het
Csn1s2a	A	T	5: 87,933,161 (GRCm39)	I137F	possibly damaging	Het
Cttnbp2	A	T	6: 18,375,943 (GRCm39)	I1532K	possibly damaging	Het
Dnajc13	C	A	9: 104,107,230 (GRCm39)	R304L	possibly damaging	Het
Dop1a	T	A	9: 86,394,912 (GRCm39)	M664K	probably damaging	Het
Emilin3	T	A	2: 160,750,741 (GRCm39)	E336V	probably damaging	Het
Eml5	A	G	12: 98,791,683 (GRCm39)	Y63H		Het
Fbxo41	G	T	6: 85,456,958 (GRCm39)	R404S	possibly damaging	Het
Gpr155	A	T	2: 73,197,835 (GRCm39)	Y456*	probably null	Het
Gpr156	T	A	16: 37,812,523 (GRCm39)	N286K	probably damaging	Het
Kcna5	A	G	6: 126,511,808 (GRCm39)	S107P	probably benign	Het
Kcne2	A	T	16: 92,093,710 (GRCm39)	H79L	possibly damaging	Het
Kcnh4	T	A	11: 100,648,025 (GRCm39)	M113L	probably benign	Het
Lad1	T	A	1: 135,755,513 (GRCm39)	L263Q	probably damaging	Het
Lctl	G	A	9: 64,034,249 (GRCm39)	G296D	probably damaging	Het
Lmtk3	A	T	7: 45,437,424 (GRCm39)	I205F	possibly damaging	Het
Magel2	G	T	7: 62,029,079 (GRCm39)	R661L	unknown	Het
Mcm10	G	A	2: 5,011,920 (GRCm39)	P180S	possibly damaging	Het
Mia3	G	T	1: 183,108,247 (GRCm39)	A446D		Het
N4bp2	G	A	5: 65,963,714 (GRCm39)	V588M	probably benign	Het
Naip6	C	T	13: 100,436,259 (GRCm39)	V755M	probably benign	Het
Neurl1a	T	C	19: 47,229,099 (GRCm39)	V213A	probably damaging	Het
Ntng1	T	C	3: 110,042,763 (GRCm39)	Q21R	probably damaging	Het
Nup160	T	C	2: 90,534,296 (GRCm39)	L707S	probably damaging	Het
Oas2	A	T	5: 120,876,587 (GRCm39)	V452D	probably damaging	Het
Or10a3n	A	G	7: 108,493,429 (GRCm39)	F67L	probably damaging	Het
Or1j1	A	G	2: 36,702,915 (GRCm39)	L63P	probably damaging	Het
Or1j4	A	T	2: 36,740,081 (GRCm39)	M8L	probably benign	Het
Or1n1	G	A	2: 36,749,680 (GRCm39)	R227*	probably null	Het
Or52s1	A	C	7: 102,861,516 (GRCm39)	T150P	probably damaging	Het
Plekhg1	A	T	10: 3,914,327 (GRCm39)	T1405S		Het
Pnrc1	G	A	4: 33,248,300 (GRCm39)	P33L	probably damaging	Het
Prkag2	A	T	5: 25,085,684 (GRCm39)	V312E	possibly damaging	Het
Rps17	T	A	7: 80,994,093 (GRCm39)	E76V	possibly damaging	Het
Rsph10b	G	A	5: 143,904,038 (GRCm39)	G672S	possibly damaging	Het
Slc2a13	T	C	15: 91,205,807 (GRCm39)	N460S	probably benign	Het
Slco2b1	A	T	7: 99,339,764 (GRCm39)	C56S	possibly damaging	Het
Speer1f	G	A	5: 11,466,403 (GRCm39)	D7N	possibly damaging	Het
Spn	T	C	7: 126,736,178 (GRCm39)	T110A	probably benign	Het
Sult2a8	T	C	7: 14,147,640 (GRCm39)	N217S	possibly damaging	Het
Tbx2	C	A	11: 85,724,315 (GRCm39)	T128N	probably damaging	Het
Tecpr2	A	T	12: 110,934,278 (GRCm39)	M1313L	probably benign	Het
Tmc2	G	A	2: 130,038,497 (GRCm39)		probably null	Het
Tstd1	G	T	1: 171,247,523 (GRCm39)	A69S	probably damaging	Het
Txnrd3	A	G	6: 89,638,567 (GRCm39)	D252G	probably benign	Het
Ulk2	T	C	11: 61,710,174 (GRCm39)	N345D	probably damaging	Het
Unc13c	T	C	9: 73,481,355 (GRCm39)	D1694G	probably benign	Het
Vill	T	C	9: 118,894,561 (GRCm39)	V406A	probably damaging	Het
Vmn2r115	T	C	17: 23,564,887 (GRCm39)	V258A	possibly damaging	Het
Vmn2r82	T	A	10: 79,232,452 (GRCm39)	M817K	probably benign	Het
Xpnpep3	T	C	15: 81,315,088 (GRCm39)	S263P	probably benign	Het
Zfp980	A	G	4: 145,428,714 (GRCm39)	D481G	probably benign	Het
Zmpste24	A	G	4: 120,952,778 (GRCm39)	S81P	probably damaging	Het
Znrf4	A	G	17: 56,819,169 (GRCm39)	V46A	probably benign	Het

Other mutations in Nrdc

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00577:Nrdc	APN	4	108,903,884 (GRCm39)	unclassified	probably benign
IGL00857:Nrdc	APN	4	108,911,199 (GRCm39)	missense	probably damaging	1.00
IGL01417:Nrdc	APN	4	108,858,027 (GRCm39)	utr 5 prime	probably benign
IGL01457:Nrdc	APN	4	108,904,857 (GRCm39)	missense	probably benign	0.03
IGL02112:Nrdc	APN	4	108,884,629 (GRCm39)	splice site	probably benign
IGL02279:Nrdc	APN	4	108,881,391 (GRCm39)	splice site	probably benign
IGL02332:Nrdc	APN	4	108,858,185 (GRCm39)	missense	probably damaging	0.99
IGL02890:Nrdc	APN	4	108,911,116 (GRCm39)	missense	possibly damaging	0.55
IGL03179:Nrdc	APN	4	108,903,888 (GRCm39)	unclassified	probably benign
PIT4354001:Nrdc	UTSW	4	108,911,222 (GRCm39)	critical splice donor site	probably null
R0551:Nrdc	UTSW	4	108,904,905 (GRCm39)	missense	probably damaging	1.00
R1468:Nrdc	UTSW	4	108,873,865 (GRCm39)	missense	probably benign	0.01
R1468:Nrdc	UTSW	4	108,873,865 (GRCm39)	missense	probably benign	0.01
R1990:Nrdc	UTSW	4	108,896,972 (GRCm39)	nonsense	probably null
R4391:Nrdc	UTSW	4	108,903,841 (GRCm39)	missense	probably damaging	1.00
R4994:Nrdc	UTSW	4	108,903,809 (GRCm39)	missense	probably benign
R5164:Nrdc	UTSW	4	108,896,914 (GRCm39)	missense	probably damaging	0.99
R5229:Nrdc	UTSW	4	108,906,305 (GRCm39)	missense	probably damaging	1.00
R5387:Nrdc	UTSW	4	108,896,959 (GRCm39)	missense	probably damaging	1.00
R5530:Nrdc	UTSW	4	108,904,806 (GRCm39)	missense	probably damaging	0.96
R5672:Nrdc	UTSW	4	108,895,242 (GRCm39)	nonsense	probably null
R5990:Nrdc	UTSW	4	108,876,268 (GRCm39)	missense	probably damaging	1.00
R6018:Nrdc	UTSW	4	108,870,944 (GRCm39)	missense	probably benign	0.01
R6106:Nrdc	UTSW	4	108,901,782 (GRCm39)	missense	probably damaging	0.99
R6114:Nrdc	UTSW	4	108,901,782 (GRCm39)	missense	probably damaging	0.99
R6140:Nrdc	UTSW	4	108,906,308 (GRCm39)	missense	probably damaging	0.97
R6285:Nrdc	UTSW	4	108,895,203 (GRCm39)	missense	probably damaging	0.99
R6824:Nrdc	UTSW	4	108,900,622 (GRCm39)	missense	probably damaging	1.00
R7019:Nrdc	UTSW	4	108,885,999 (GRCm39)	missense	probably benign	0.33
R7735:Nrdc	UTSW	4	108,895,182 (GRCm39)	missense	probably damaging	1.00
R8261:Nrdc	UTSW	4	108,873,876 (GRCm39)	missense	possibly damaging	0.67
R8340:Nrdc	UTSW	4	108,858,351 (GRCm39)	missense	probably damaging	1.00
R8352:Nrdc	UTSW	4	108,876,260 (GRCm39)	missense	probably damaging	0.98
R8368:Nrdc	UTSW	4	108,870,895 (GRCm39)	missense	probably benign	0.02
R8452:Nrdc	UTSW	4	108,876,260 (GRCm39)	missense	probably damaging	0.98
R9350:Nrdc	UTSW	4	108,889,658 (GRCm39)	missense	possibly damaging	0.93
R9428:Nrdc	UTSW	4	108,858,121 (GRCm39)	missense	probably damaging	0.99
R9516:Nrdc	UTSW	4	108,901,863 (GRCm39)	missense	probably benign
R9526:Nrdc	UTSW	4	108,915,833 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- GTTTACATCAAAAGCTCAGGTTCC -3'
(R):5'- TTGGCAGCCTGAAGTCAGAG -3'

Sequencing Primer
(F):5'- CAAAAGCTCAGGTTCCAAAATTTTAC -3'
(R):5'- CAGCCTGAAGTCAGAGTTGTAC -3'

Posted On

2019-09-13