Mutagenetix > Incidental Mutation

Incidental Mutation 'R7355:Golga5'

570898

Institutional Source

Beutler Lab

Gene Symbol

Golga5

Ensembl Gene

ENSMUSG00000021192

Gene Name

golgin A5

Synonyms

Ret-II

MMRRC Submission

045441-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7355 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

102435394-102464166 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 102438494 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 70 (I70F)

Ref Sequence

ENSEMBL: ENSMUSP00000021609 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021609] [ENSMUST00000179218]

AlphaFold

Q9QYE6

Predicted Effect

possibly damaging
Transcript: ENSMUST00000021609
AA Change: I70F

PolyPhen 2 Score 0.827 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000021609
Gene: ENSMUSG00000021192
AA Change: I70F

Domain	Start	End	E-Value	Type
low complexity region	148	167	N/A	INTRINSIC
low complexity region	193	213	N/A	INTRINSIC
Pfam:Golgin_A5	233	709	1.1e-172	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000179218
AA Change: I70F

PolyPhen 2 Score 0.827 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000137305
Gene: ENSMUSG00000021192
AA Change: I70F

Domain	Start	End	E-Value	Type
low complexity region	148	167	N/A	INTRINSIC
low complexity region	193	213	N/A	INTRINSIC
Pfam:Golgin_A5	233	709	1.1e-172	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

100% (72/72)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The Golgi apparatus, which participates in glycosylation and transport of proteins and lipids in the secretory pathway, consists of a series of stacked cisternae (flattened membrane sacs). Interactions between the Golgi and microtubules are thought to be important for the reorganization of the Golgi after it fragments during mitosis. This gene encodes one of the golgins, a family of proteins localized to the Golgi. This protein is a coiled-coil membrane protein that has been postulated to play a role in vesicle tethering and docking. Translocations involving this gene and the ret proto-oncogene have been found in tumor tissues; the chimeric sequences have been designated RET-II and PTC5. A pseudogene of this gene is located on the short arm of chromosome 5. [provided by RefSeq, Jul 2013]
PHENOTYPE: Homozygous knockout does not result in an obvious phenotype and does not affect Golgi apparatus morphology. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca17	G	A	17: 24,486,621 (GRCm39)	R1469W	probably benign	Het
Acad10	G	T	5: 121,768,780 (GRCm39)	Y728*	probably null	Het
Adamts17	T	C	7: 66,725,052 (GRCm39)	V160A		Het
Astn1	A	T	1: 158,491,846 (GRCm39)		probably null	Het
Atp8a2	T	C	14: 60,282,453 (GRCm39)	K104E	possibly damaging	Het
Axl	T	C	7: 25,473,531 (GRCm39)	Y365C	probably benign	Het
Btbd16	A	T	7: 130,423,173 (GRCm39)	Y409F	probably benign	Het
Caln1	A	T	5: 130,443,732 (GRCm39)	T22S	probably benign	Het
Camk1	C	A	6: 113,315,307 (GRCm39)	G164C	probably damaging	Het
Cd96	T	C	16: 45,861,655 (GRCm39)	T512A	possibly damaging	Het
Ceacam5	A	G	7: 17,481,312 (GRCm39)	D353G	probably damaging	Het
Cep162	C	A	9: 87,136,008 (GRCm39)	E12*	probably null	Het
Cfh	A	T	1: 140,064,553 (GRCm39)	V365E	probably damaging	Het
Chd7	A	G	4: 8,752,196 (GRCm39)	H231R	unknown	Het
Cntnap3	T	C	13: 64,919,776 (GRCm39)	T694A	probably benign	Het
Colq	C	A	14: 31,267,066 (GRCm39)	G158V	probably damaging	Het
Ctif	G	A	18: 75,743,756 (GRCm39)	H139Y	probably damaging	Het
D630003M21Rik	A	T	2: 158,042,144 (GRCm39)	F934Y	probably damaging	Het
Dclre1a	T	A	19: 56,535,567 (GRCm39)	T6S	possibly damaging	Het
Dnmbp	T	C	19: 43,890,180 (GRCm39)	D529G	probably benign	Het
Fat2	T	A	11: 55,147,377 (GRCm39)	Q3955L	probably benign	Het
Gjd4	A	G	18: 9,280,860 (GRCm39)	S73P	probably damaging	Het
Gm19410	C	A	8: 36,274,226 (GRCm39)	Q1460K	probably benign	Het
Gon4l	T	A	3: 88,770,827 (GRCm39)	I502N	probably damaging	Het
Gtf2ird2	C	G	5: 134,245,491 (GRCm39)	A583G	probably benign	Het
Hectd1	A	C	12: 51,838,081 (GRCm39)	W694G	possibly damaging	Het
Ifit1bl2	C	T	19: 34,597,061 (GRCm39)	G185D	probably damaging	Het
Igfbp6	G	A	15: 102,056,375 (GRCm39)	A145T	probably benign	Het
Junb	C	T	8: 85,705,013 (GRCm39)	A16T	probably benign	Het
Kcnh4	C	T	11: 100,643,269 (GRCm39)	V333I	possibly damaging	Het
Ly6c1	T	C	15: 74,919,256 (GRCm39)	T45A	possibly damaging	Het
Mon2	T	A	10: 122,845,421 (GRCm39)	Q1428L	probably benign	Het
Nfatc2ip	C	T	7: 125,986,783 (GRCm39)		probably null	Het
Olfml3	C	A	3: 103,643,395 (GRCm39)	G329W	probably damaging	Het
Or10ag56	T	C	2: 87,139,754 (GRCm39)	V207A	probably benign	Het
Or10al2	A	G	17: 37,983,301 (GRCm39)	Y129C	probably benign	Het
Or6d15	T	A	6: 116,559,916 (GRCm39)		probably benign	Het
Or9g3	C	T	2: 85,584,023 (GRCm39)	P106L	probably benign	Het
Pcsk7	A	G	9: 45,820,672 (GRCm39)	M35V	probably benign	Het
Phf14	A	G	6: 12,081,006 (GRCm39)	N921S	probably benign	Het
Pla2g4e	G	A	2: 120,011,982 (GRCm39)	S396F	possibly damaging	Het
Ppp4r4	A	T	12: 103,570,841 (GRCm39)	K766*	probably null	Het
Pprc1	T	C	19: 46,053,785 (GRCm39)	V1105A	unknown	Het
Prdm9	T	G	17: 15,765,497 (GRCm39)	N428H	probably benign	Het
Prkcg	C	T	7: 3,372,025 (GRCm39)	T497I	possibly damaging	Het
Prkcz	A	G	4: 155,441,953 (GRCm39)	W60R	probably damaging	Het
Ptprn2	T	C	12: 116,822,571 (GRCm39)	F217L	probably benign	Het
Pum2	T	A	12: 8,763,906 (GRCm39)	Y283*	probably null	Het
Rest	A	G	5: 77,415,875 (GRCm39)	M30V	probably benign	Het
Rfxank	C	T	8: 70,587,957 (GRCm39)	R150H	probably damaging	Het
Ros1	T	A	10: 52,042,175 (GRCm39)	Q250L	probably damaging	Het
Sgk2	A	G	2: 162,854,987 (GRCm39)	D366G	probably benign	Het
Shoc1	T	C	4: 59,076,155 (GRCm39)	D596G	probably benign	Het
Siglec1	A	T	2: 130,922,371 (GRCm39)	L568Q	probably benign	Het
Slain1	AT	ATT	14: 103,940,012 (GRCm39)		probably null	Het
Slc10a5	A	T	3: 10,399,375 (GRCm39)	Y428*	probably null	Het
Slc25a54	T	C	3: 109,010,085 (GRCm39)	W195R	probably damaging	Het
Slf1	A	G	13: 77,239,422 (GRCm39)	I414T	probably damaging	Het
Snx4	C	T	16: 33,087,236 (GRCm39)	P127L	probably damaging	Het
Spdl1	A	T	11: 34,714,191 (GRCm39)	L166H	not run	Het
Tapt1	C	T	5: 44,334,459 (GRCm39)	V511I	probably benign	Het
Tbata	A	G	10: 61,010,099 (GRCm39)		probably benign	Het
Tbx4	T	A	11: 85,802,835 (GRCm39)	V264E	probably damaging	Het
Tecta	A	T	9: 42,278,438 (GRCm39)	Y1023*	probably null	Het
Thop1	A	G	10: 80,911,465 (GRCm39)	D117G	probably damaging	Het
Trip12	A	G	1: 84,792,604 (GRCm39)	L13P	probably damaging	Het
Tut7	T	C	13: 59,969,616 (GRCm39)	N93S	probably benign	Het
Unc13b	T	A	4: 43,237,754 (GRCm39)	V637E	probably damaging	Het
Vinac1	G	T	2: 128,879,149 (GRCm39)	Q926K	unknown	Het
Yipf3	T	A	17: 46,561,566 (GRCm39)	M168K	probably damaging	Het
Zfp119a	A	T	17: 56,173,287 (GRCm39)	C185*	probably null	Het
Zfyve21	A	T	12: 111,791,485 (GRCm39)	I157F	possibly damaging	Het
Zfyve26	A	T	12: 79,286,828 (GRCm39)	D2253E	probably damaging	Het

Other mutations in Golga5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01104:Golga5	APN	12	102,460,073 (GRCm39)	missense	probably damaging	0.99
IGL01487:Golga5	APN	12	102,461,955 (GRCm39)	intron	probably benign
IGL01585:Golga5	APN	12	102,445,954 (GRCm39)	missense	probably benign
IGL01901:Golga5	APN	12	102,446,061 (GRCm39)	critical splice donor site	probably null
IGL02063:Golga5	APN	12	102,438,418 (GRCm39)	missense	probably benign	0.00
IGL02118:Golga5	APN	12	102,462,011 (GRCm39)	missense	possibly damaging	0.67
IGL02568:Golga5	APN	12	102,438,338 (GRCm39)	missense	probably benign	0.33
golgotha	UTSW	12	102,450,835 (GRCm39)	critical splice donor site	probably null
BB007:Golga5	UTSW	12	102,450,681 (GRCm39)	missense	probably benign	0.31
BB017:Golga5	UTSW	12	102,450,681 (GRCm39)	missense	probably benign	0.31
FR4976:Golga5	UTSW	12	102,441,919 (GRCm39)	splice site	probably null
R0244:Golga5	UTSW	12	102,442,447 (GRCm39)	missense	probably benign
R0432:Golga5	UTSW	12	102,442,467 (GRCm39)	missense	possibly damaging	0.50
R0552:Golga5	UTSW	12	102,450,752 (GRCm39)	missense	possibly damaging	0.75
R0659:Golga5	UTSW	12	102,442,467 (GRCm39)	missense	possibly damaging	0.50
R1244:Golga5	UTSW	12	102,438,554 (GRCm39)	missense	probably benign	0.01
R1542:Golga5	UTSW	12	102,440,979 (GRCm39)	missense	probably damaging	1.00
R1791:Golga5	UTSW	12	102,458,390 (GRCm39)	missense	possibly damaging	0.48
R2310:Golga5	UTSW	12	102,458,420 (GRCm39)	missense	probably damaging	0.99
R5110:Golga5	UTSW	12	102,438,336 (GRCm39)	missense	probably benign	0.02
R5704:Golga5	UTSW	12	102,455,707 (GRCm39)	missense	probably benign	0.00
R6228:Golga5	UTSW	12	102,450,740 (GRCm39)	missense	probably benign	0.00
R6229:Golga5	UTSW	12	102,450,740 (GRCm39)	missense	probably benign	0.00
R6241:Golga5	UTSW	12	102,438,732 (GRCm39)	missense	probably damaging	0.96
R7236:Golga5	UTSW	12	102,441,034 (GRCm39)	critical splice donor site	probably null
R7404:Golga5	UTSW	12	102,450,778 (GRCm39)	missense	probably damaging	0.97
R7493:Golga5	UTSW	12	102,450,835 (GRCm39)	critical splice donor site	probably null
R7930:Golga5	UTSW	12	102,450,681 (GRCm39)	missense	probably benign	0.31
R8062:Golga5	UTSW	12	102,450,739 (GRCm39)	missense	probably benign
R8231:Golga5	UTSW	12	102,438,558 (GRCm39)	missense	probably benign
R8765:Golga5	UTSW	12	102,445,963 (GRCm39)	missense	probably benign	0.01
R9083:Golga5	UTSW	12	102,458,476 (GRCm39)	missense	probably benign	0.01
R9085:Golga5	UTSW	12	102,458,476 (GRCm39)	missense	probably benign	0.01
R9086:Golga5	UTSW	12	102,458,476 (GRCm39)	missense	probably benign	0.01
R9301:Golga5	UTSW	12	102,443,057 (GRCm39)	missense	probably benign	0.00
R9655:Golga5	UTSW	12	102,446,008 (GRCm39)	missense	possibly damaging	0.55
Z1177:Golga5	UTSW	12	102,438,264 (GRCm39)	start gained	probably benign
Z1187:Golga5	UTSW	12	102,440,853 (GRCm39)	missense	probably benign	0.13

Predicted Primers

PCR Primer
(F):5'- TGCTGGAAGGGCTGAAGATC -3'
(R):5'- ACCTGACGGAGAACTTGGAG -3'

Sequencing Primer
(F):5'- GGGCTGAAGATCTTTTAAACCG -3'
(R):5'- CCAGTGGGCTCTTTTTGGGAAC -3'

Posted On

2019-09-13