Incidental Mutation 'R7278:Ccnk'
ID 571573
Institutional Source Beutler Lab
Gene Symbol Ccnk
Ensembl Gene ENSMUSG00000021258
Gene Name cyclin K
Synonyms CycK, CPR4
MMRRC Submission 045360-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R7278 (G1)
Quality Score 213.009
Status Validated
Chromosome 12
Chromosomal Location 108145838-108169618 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 108159964 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamine to Lysine at position 149 (Q149K)
Ref Sequence ENSEMBL: ENSMUSP00000152784 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000101055] [ENSMUST00000221167]
AlphaFold no structure available at present
Predicted Effect possibly damaging
Transcript: ENSMUST00000101055
AA Change: Q149K

PolyPhen 2 Score 0.632 (Sensitivity: 0.87; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000098616
Gene: ENSMUSG00000021258
AA Change: Q149K

DomainStartEndE-ValueType
CYCLIN 55 149 6.67e-16 SMART
Cyclin_C 158 278 4.83e-1 SMART
CYCLIN 162 256 1.23e-1 SMART
low complexity region 342 361 N/A INTRINSIC
low complexity region 365 392 N/A INTRINSIC
low complexity region 404 427 N/A INTRINSIC
low complexity region 428 446 N/A INTRINSIC
low complexity region 457 471 N/A INTRINSIC
low complexity region 476 576 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000221167
AA Change: Q149K

PolyPhen 2 Score 0.632 (Sensitivity: 0.87; Specificity: 0.91)
Meta Mutation Damage Score 0.1382 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency 99% (78/79)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the transcription cyclin family. These cyclins may regulate transcription through their association with and activation of cyclin-dependent kinases (CDK) that phosphorylate the C-terminal domain (CTD) of the large subunit of RNA polymerase II. This gene product may play a dual role in regulating CDK and RNA polymerase II activities. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a gene trap allele display complete embryonic lethality before implantation. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 78 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1110002E22Rik T C 3: 137,771,237 (GRCm39) L142P probably benign Het
Abca13 A T 11: 9,241,126 (GRCm39) R996S possibly damaging Het
Abcb6 A G 1: 75,151,017 (GRCm39) F558L possibly damaging Het
Acp7 T A 7: 28,330,307 (GRCm39) D2V unknown Het
Acvr1c T C 2: 58,174,948 (GRCm39) D280G probably damaging Het
Atp8a1 A G 5: 67,781,380 (GRCm39) S1124P Het
B4galnt1 A T 10: 127,003,657 (GRCm39) T207S probably benign Het
C2cd4d C A 3: 94,271,445 (GRCm39) T237N probably benign Het
C8b T C 4: 104,637,824 (GRCm39) C99R probably damaging Het
Chfr A G 5: 110,288,226 (GRCm39) D47G probably benign Het
Chid1 A T 7: 141,109,401 (GRCm39) probably null Het
Cibar2 T A 8: 120,895,342 (GRCm39) T187S possibly damaging Het
Cmya5 T A 13: 93,232,208 (GRCm39) E960V probably damaging Het
Col18a1 A G 10: 76,932,118 (GRCm39) S112P unknown Het
Cps1 G A 1: 67,210,080 (GRCm39) V637I probably damaging Het
Crispld1 A G 1: 17,823,102 (GRCm39) T390A probably benign Het
Cyp2c54 A T 19: 40,058,697 (GRCm39) L245* probably null Het
Ddr2 G T 1: 169,812,530 (GRCm39) T654K probably damaging Het
Dnah10 T C 5: 124,868,855 (GRCm39) probably null Het
Elavl4 C T 4: 110,068,622 (GRCm39) probably null Het
Emilin1 T C 5: 31,078,004 (GRCm39) V921A probably benign Het
Evpl T A 11: 116,113,939 (GRCm39) E1250D probably damaging Het
Fam228a C T 12: 4,782,790 (GRCm39) G101E probably benign Het
Gemin4 T C 11: 76,102,932 (GRCm39) T610A probably damaging Het
Glis1 T C 4: 107,292,880 (GRCm39) M1T probably null Het
Gm14399 C T 2: 174,972,252 (GRCm39) probably benign Het
Gorasp2 C T 2: 70,509,849 (GRCm39) T170I probably damaging Het
Gpr37 A G 6: 25,669,341 (GRCm39) V501A possibly damaging Het
Grik4 T A 9: 42,533,356 (GRCm39) Q388L probably benign Het
Hspg2 T A 4: 137,278,436 (GRCm39) D3035E probably damaging Het
Htr4 A T 18: 62,545,247 (GRCm39) N11Y probably benign Het
Itgb2l A G 16: 96,230,243 (GRCm39) S356P probably damaging Het
Klk1b22 A G 7: 43,764,173 (GRCm39) N34D probably benign Het
Lmcd1 A G 6: 112,287,500 (GRCm39) D62G possibly damaging Het
Lrp2 C T 2: 69,316,696 (GRCm39) G2095E probably damaging Het
Macf1 T A 4: 123,334,536 (GRCm39) E4407V possibly damaging Het
Mcm5 T C 8: 75,851,487 (GRCm39) F631L probably benign Het
Mov10l1 A G 15: 88,878,071 (GRCm39) S170G probably benign Het
Muc5b A T 7: 141,411,239 (GRCm39) D1395V unknown Het
Muc6 G A 7: 141,226,842 (GRCm39) T1395M probably benign Het
Myh15 A G 16: 48,911,468 (GRCm39) D300G probably damaging Het
Naa80 T C 9: 107,460,498 (GRCm39) L131P probably damaging Het
Ndst4 A G 3: 125,231,952 (GRCm39) T174A probably benign Het
Nek5 T A 8: 22,580,500 (GRCm39) N406I probably benign Het
Nr2c2 G A 6: 92,136,359 (GRCm39) V400I probably damaging Het
Or1l4 T C 2: 37,092,092 (GRCm39) Y280H probably damaging Het
Or1l4b G T 2: 37,037,021 (GRCm39) V266L probably benign Het
Or51aa2 A T 7: 103,187,935 (GRCm39) Y169N probably benign Het
Or52m1 T C 7: 102,290,190 (GRCm39) S246P probably damaging Het
Or6b1 G A 6: 42,811,330 (GRCm39) probably null Het
Or6c5c T A 10: 129,298,620 (GRCm39) I25N probably damaging Het
Parn T C 16: 13,443,927 (GRCm39) probably null Het
Pfkl T C 10: 77,827,857 (GRCm39) T468A probably damaging Het
Pi16 C A 17: 29,538,208 (GRCm39) P7Q possibly damaging Het
Plce1 T C 19: 38,768,340 (GRCm39) I2205T possibly damaging Het
Prss16 A T 13: 22,187,317 (GRCm39) N442K probably damaging Het
Pus7 A G 5: 23,957,342 (GRCm39) S370P probably damaging Het
Ripk3 G T 14: 56,024,741 (GRCm39) Y210* probably null Het
Rps6ka2 C A 17: 7,539,034 (GRCm39) F317L probably damaging Het
Slc13a3 G A 2: 165,287,448 (GRCm39) R169W possibly damaging Het
Slc6a21 T A 7: 44,931,904 (GRCm39) I256N possibly damaging Het
Slc6a9 G A 4: 117,725,303 (GRCm39) R589Q probably benign Het
Slc8a2 T C 7: 15,875,077 (GRCm39) S442P probably damaging Het
Snupn T A 9: 56,890,028 (GRCm39) M283K probably damaging Het
Steap3 A T 1: 120,162,087 (GRCm39) M395K probably damaging Het
Sv2b G A 7: 74,797,402 (GRCm39) P331S probably damaging Het
Tlr1 A G 5: 65,084,115 (GRCm39) V154A probably benign Het
Tmem131 A G 1: 36,835,382 (GRCm39) S1580P probably damaging Het
Tmem51 TCCCC TCCC 4: 141,764,996 (GRCm39) probably null Het
Trav14d-3-dv8 G A 14: 53,316,218 (GRCm39) R26H probably benign Het
Trp53 C T 11: 69,482,081 (GRCm39) L365F probably benign Het
Trp53bp1 A T 2: 121,029,516 (GRCm39) I1838N probably damaging Het
Ugt1a5 A T 1: 88,094,608 (GRCm39) K279* probably null Het
Unc80 A G 1: 66,591,368 (GRCm39) E1141G possibly damaging Het
Vti1b T C 12: 79,213,153 (GRCm39) D49G probably benign Het
Wnt10a A T 1: 74,832,641 (GRCm39) H78L possibly damaging Het
Zfp869 G A 8: 70,159,128 (GRCm39) H482Y probably damaging Het
Zfyve1 A G 12: 83,598,314 (GRCm39) V638A probably damaging Het
Other mutations in Ccnk
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02331:Ccnk APN 12 108,155,343 (GRCm39) missense probably damaging 1.00
IGL02341:Ccnk APN 12 108,161,989 (GRCm39) missense unknown
IGL02557:Ccnk APN 12 108,161,985 (GRCm39) missense unknown
FR4449:Ccnk UTSW 12 108,168,766 (GRCm39) unclassified probably benign
FR4737:Ccnk UTSW 12 108,168,766 (GRCm39) unclassified probably benign
FR4976:Ccnk UTSW 12 108,168,766 (GRCm39) unclassified probably benign
R0481:Ccnk UTSW 12 108,165,568 (GRCm39) unclassified probably benign
R0725:Ccnk UTSW 12 108,161,834 (GRCm39) splice site probably benign
R1839:Ccnk UTSW 12 108,161,333 (GRCm39) missense probably damaging 1.00
R2144:Ccnk UTSW 12 108,155,349 (GRCm39) missense probably null 1.00
R2903:Ccnk UTSW 12 108,168,647 (GRCm39) unclassified probably benign
R4660:Ccnk UTSW 12 108,168,575 (GRCm39) unclassified probably benign
R5131:Ccnk UTSW 12 108,168,890 (GRCm39) unclassified probably benign
R5404:Ccnk UTSW 12 108,161,882 (GRCm39) missense possibly damaging 0.88
R5843:Ccnk UTSW 12 108,159,989 (GRCm39) missense probably damaging 1.00
R5860:Ccnk UTSW 12 108,153,466 (GRCm39) missense probably damaging 0.99
R6522:Ccnk UTSW 12 108,153,446 (GRCm39) missense probably damaging 0.99
R6864:Ccnk UTSW 12 108,168,473 (GRCm39) unclassified probably benign
R7135:Ccnk UTSW 12 108,152,734 (GRCm39) missense probably damaging 0.96
R7179:Ccnk UTSW 12 108,153,517 (GRCm39) missense probably damaging 1.00
R7592:Ccnk UTSW 12 108,152,724 (GRCm39) missense possibly damaging 0.79
R8191:Ccnk UTSW 12 108,159,933 (GRCm39) missense probably benign 0.27
R8271:Ccnk UTSW 12 108,162,114 (GRCm39) splice site probably benign
R8273:Ccnk UTSW 12 108,152,758 (GRCm39) missense probably damaging 1.00
R9155:Ccnk UTSW 12 108,159,978 (GRCm39) missense probably damaging 1.00
R9279:Ccnk UTSW 12 108,161,946 (GRCm39) missense unknown
R9558:Ccnk UTSW 12 108,155,397 (GRCm39) missense possibly damaging 0.71
R9566:Ccnk UTSW 12 108,152,695 (GRCm39) missense probably benign 0.04
Predicted Primers PCR Primer
(F):5'- TCTGGGCGGTTTAGATTACTAC -3'
(R):5'- GACTGGCTTCTAGAATGGCAAG -3'

Sequencing Primer
(F):5'- CTACTGTGTGCTCATGTAACAGACTG -3'
(R):5'- AACAATTGGGATGTGGCTCTCAG -3'
Posted On 2019-09-13