Incidental Mutation 'R7372:Atrnl1'
ID 572194
Institutional Source Beutler Lab
Gene Symbol Atrnl1
Ensembl Gene ENSMUSG00000054843
Gene Name attractin like 1
Synonyms Alp
MMRRC Submission 045455-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.182) question?
Stock # R7372 (G1)
Quality Score 225.009
Status Validated
Chromosome 19
Chromosomal Location 57599466-58121775 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 57924078 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Alanine at position 1281 (V1281A)
Ref Sequence ENSEMBL: ENSMUSP00000076514 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000077282]
AlphaFold Q6A051
Predicted Effect possibly damaging
Transcript: ENSMUST00000077282
AA Change: V1281A

PolyPhen 2 Score 0.466 (Sensitivity: 0.89; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000076514
Gene: ENSMUSG00000054843
AA Change: V1281A

DomainStartEndE-ValueType
low complexity region 25 32 N/A INTRINSIC
EGF 61 90 5.71e-1 SMART
CUB 92 208 1.43e-11 SMART
EGF 209 244 1.95e1 SMART
Pfam:EGF_2 248 279 5.8e-7 PFAM
Pfam:Kelch_5 350 391 2.1e-9 PFAM
Pfam:Kelch_6 354 401 5.8e-8 PFAM
Pfam:Kelch_4 465 517 4.3e-7 PFAM
Pfam:Kelch_1 519 573 2.7e-6 PFAM
PSI 613 656 3.38e-1 SMART
PSI 665 708 2e-3 SMART
PSI 714 759 1.72e-2 SMART
CLECT 747 872 2.86e-20 SMART
PSI 888 938 6.26e-5 SMART
PSI 941 1011 1.73e-7 SMART
EGF_Lam 1013 1056 1.07e-5 SMART
low complexity region 1157 1173 N/A INTRINSIC
transmembrane domain 1229 1251 N/A INTRINSIC
low complexity region 1261 1272 N/A INTRINSIC
low complexity region 1326 1339 N/A INTRINSIC
Meta Mutation Damage Score 0.0977 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.2%
Validation Efficiency 99% (68/69)
MGI Phenotype PHENOTYPE: Mice homozygous for a null allele exhibit normal coat coloring and normal brain morphology. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 68 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abl2 G A 1: 156,450,189 (GRCm39) V119M probably damaging Het
Acss2 T C 2: 155,399,100 (GRCm39) V454A probably damaging Het
Adam6b T A 12: 113,453,784 (GRCm39) D200E probably benign Het
Adarb1 T A 10: 77,131,712 (GRCm39) probably null Het
Aqp12 C T 1: 92,934,088 (GRCm39) probably benign Het
Brdt A G 5: 107,518,160 (GRCm39) E761G possibly damaging Het
Bsn A T 9: 107,987,718 (GRCm39) I2678N unknown Het
C2cd2 A T 16: 97,676,580 (GRCm39) C136S Het
Camk4 A G 18: 33,318,178 (GRCm39) D445G probably benign Het
Cckar T C 5: 53,864,624 (GRCm39) T26A probably damaging Het
Cd209a T A 8: 3,798,857 (GRCm39) probably null Het
Cept1 A G 3: 106,411,056 (GRCm39) F379S probably benign Het
Crhr1 A G 11: 104,054,719 (GRCm39) probably null Het
Cryzl1 T C 16: 91,509,085 (GRCm39) E72G probably benign Het
Ctnnal1 T A 4: 56,826,285 (GRCm39) E526V possibly damaging Het
Cyp3a41a T C 5: 145,650,374 (GRCm39) I90V possibly damaging Het
Dek T C 13: 47,259,053 (GRCm39) E51G unknown Het
Dnaaf6rt A T 1: 31,262,432 (GRCm39) D138V probably damaging Het
Evc2 T A 5: 37,544,477 (GRCm39) V742E probably damaging Het
Fat4 G A 3: 38,944,358 (GRCm39) V1084M probably damaging Het
Fscb G A 12: 64,518,598 (GRCm39) T956I unknown Het
Glipr2 T C 4: 43,968,184 (GRCm39) L29P probably damaging Het
Gm19402 A T 10: 77,526,261 (GRCm39) S111T unknown Het
Gm4553 ACCCTTGCAGCCACCACAGGAGCCACAGCCCCCACAGGAGCTACAGCCTCCCTTGCAGCCACCACAGGAGCCACAGCCCCCACAGGAGCTACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCC ACCCTTGCAGCCACCACAGGAGCCACAGCCCCCACAGGAGCTACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCC 7: 141,719,157 (GRCm39) probably benign Het
Gnl3 T C 14: 30,738,843 (GRCm39) K115E probably benign Het
Gpn1 T A 5: 31,658,465 (GRCm39) F147I probably damaging Het
Gsdmd T A 15: 75,737,618 (GRCm39) L232H probably benign Het
Helz2 A G 2: 180,880,216 (GRCm39) V500A possibly damaging Het
Hemk1 T C 9: 107,214,267 (GRCm39) E55G probably benign Het
Hs2st1 A T 3: 144,141,221 (GRCm39) probably null Het
Ighv1-63 A G 12: 115,459,486 (GRCm39) V37A probably damaging Het
Iqsec3 C A 6: 121,360,991 (GRCm39) E956* probably null Het
Kcnh8 T A 17: 53,201,129 (GRCm39) I521K probably damaging Het
Kif3c T A 12: 3,437,592 (GRCm39) M531K probably benign Het
Kif5c T A 2: 49,648,671 (GRCm39) probably null Het
Krt15 A T 11: 100,026,386 (GRCm39) V100E possibly damaging Het
Lcor T C 19: 41,573,945 (GRCm39) L900P probably damaging Het
Lrrc32 A G 7: 98,149,014 (GRCm39) D598G probably benign Het
Mug2 T C 6: 122,060,425 (GRCm39) V1387A possibly damaging Het
Nin T A 12: 70,102,803 (GRCm39) E275V Het
Or5p68 A G 7: 107,945,703 (GRCm39) F162L probably benign Het
Papolg A G 11: 23,816,439 (GRCm39) I698T probably benign Het
Pcdhb20 A G 18: 37,639,840 (GRCm39) N789D probably benign Het
Pik3cg C T 12: 32,247,196 (GRCm39) M842I probably damaging Het
Pnn T A 12: 59,115,765 (GRCm39) D135E probably damaging Het
Pold1 C A 7: 44,192,847 (GRCm39) R5L possibly damaging Het
Prl8a1 A T 13: 27,758,089 (GRCm39) F207I probably damaging Het
Prr11 A G 11: 86,989,600 (GRCm39) V257A probably benign Het
Prtg C T 9: 72,758,848 (GRCm39) R401* probably null Het
Rasgrp1 A G 2: 117,115,635 (GRCm39) M651T probably benign Het
Ryr2 T A 13: 11,695,885 (GRCm39) H2994L probably damaging Het
Snx13 A T 12: 35,128,950 (GRCm39) I23L probably benign Het
Snx7 A G 3: 117,576,000 (GRCm39) L429P probably damaging Het
Spta1 C T 1: 174,025,201 (GRCm39) Q689* probably null Het
Spty2d1 T C 7: 46,648,692 (GRCm39) D79G probably damaging Het
Tbc1d9b A G 11: 50,059,515 (GRCm39) probably null Het
Tnxb T C 17: 34,936,228 (GRCm39) F2722L possibly damaging Het
Tppp2 C T 14: 52,156,865 (GRCm39) R81C probably benign Het
Trim6 G T 7: 103,881,843 (GRCm39) A391S probably benign Het
Trim69 A C 2: 122,009,064 (GRCm39) T375P possibly damaging Het
Trim72 A G 7: 127,603,858 (GRCm39) N68S possibly damaging Het
Trrap G A 5: 144,726,208 (GRCm39) V386I probably benign Het
Ttn T C 2: 76,778,275 (GRCm39) I1371V unknown Het
Usp17lb A T 7: 104,490,913 (GRCm39) probably null Het
Vmn2r20 A T 6: 123,362,468 (GRCm39) L772Q probably damaging Het
Ypel3 A G 7: 126,379,200 (GRCm39) E91G probably benign Het
Zbtb21 C T 16: 97,751,569 (GRCm39) E905K possibly damaging Het
Zfp189 T A 4: 49,530,417 (GRCm39) C507S possibly damaging Het
Other mutations in Atrnl1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00323:Atrnl1 APN 19 57,680,249 (GRCm39) missense probably benign 0.02
IGL00707:Atrnl1 APN 19 57,661,697 (GRCm39) missense probably damaging 0.96
IGL00921:Atrnl1 APN 19 57,690,585 (GRCm39) missense probably damaging 1.00
IGL01410:Atrnl1 APN 19 58,119,536 (GRCm39) missense probably damaging 1.00
IGL01468:Atrnl1 APN 19 57,688,144 (GRCm39) missense probably benign 0.02
IGL01756:Atrnl1 APN 19 57,641,380 (GRCm39) missense probably benign
IGL01971:Atrnl1 APN 19 57,741,715 (GRCm39) missense probably damaging 1.00
IGL02019:Atrnl1 APN 19 57,680,195 (GRCm39) splice site probably benign
IGL02580:Atrnl1 APN 19 57,703,008 (GRCm39) splice site probably benign
IGL02649:Atrnl1 APN 19 57,638,873 (GRCm39) splice site probably benign
IGL02676:Atrnl1 APN 19 57,680,316 (GRCm39) missense probably damaging 1.00
IGL03276:Atrnl1 APN 19 57,641,359 (GRCm39) missense probably damaging 0.99
IGL03379:Atrnl1 APN 19 57,630,973 (GRCm39) missense probably benign 0.02
Magnetogorsk UTSW 19 57,618,738 (GRCm39) missense probably damaging 1.00
polar UTSW 19 57,641,382 (GRCm39) missense probably benign 0.00
PIT4812001:Atrnl1 UTSW 19 57,720,055 (GRCm39) missense probably benign 0.08
R0109:Atrnl1 UTSW 19 57,743,949 (GRCm39) missense possibly damaging 0.78
R0308:Atrnl1 UTSW 19 57,741,720 (GRCm39) missense probably benign 0.04
R0394:Atrnl1 UTSW 19 57,661,608 (GRCm39) missense probably benign 0.10
R0734:Atrnl1 UTSW 19 57,643,293 (GRCm39) missense probably damaging 1.00
R0811:Atrnl1 UTSW 19 57,661,573 (GRCm39) missense probably benign 0.07
R0812:Atrnl1 UTSW 19 57,661,573 (GRCm39) missense probably benign 0.07
R1183:Atrnl1 UTSW 19 57,638,725 (GRCm39) missense probably damaging 0.97
R1213:Atrnl1 UTSW 19 57,626,894 (GRCm39) missense probably benign 0.25
R1344:Atrnl1 UTSW 19 57,924,137 (GRCm39) critical splice donor site probably null
R1418:Atrnl1 UTSW 19 57,924,137 (GRCm39) critical splice donor site probably null
R1707:Atrnl1 UTSW 19 57,675,169 (GRCm39) missense probably benign 0.00
R1748:Atrnl1 UTSW 19 57,703,134 (GRCm39) missense probably damaging 0.99
R2051:Atrnl1 UTSW 19 57,680,281 (GRCm39) missense probably benign 0.01
R2113:Atrnl1 UTSW 19 57,744,048 (GRCm39) nonsense probably null
R2130:Atrnl1 UTSW 19 57,643,426 (GRCm39) missense probably damaging 1.00
R3710:Atrnl1 UTSW 19 57,645,546 (GRCm39) missense probably damaging 1.00
R3916:Atrnl1 UTSW 19 57,924,084 (GRCm39) missense possibly damaging 0.82
R4524:Atrnl1 UTSW 19 57,618,738 (GRCm39) missense probably damaging 1.00
R4707:Atrnl1 UTSW 19 57,617,590 (GRCm39) missense probably damaging 0.97
R4712:Atrnl1 UTSW 19 57,641,382 (GRCm39) missense probably benign 0.00
R4784:Atrnl1 UTSW 19 57,617,590 (GRCm39) missense probably damaging 0.97
R4785:Atrnl1 UTSW 19 57,617,590 (GRCm39) missense probably damaging 0.97
R4798:Atrnl1 UTSW 19 58,030,793 (GRCm39) missense probably benign
R5172:Atrnl1 UTSW 19 57,673,945 (GRCm39) nonsense probably null
R5226:Atrnl1 UTSW 19 57,638,767 (GRCm39) missense probably benign
R5289:Atrnl1 UTSW 19 57,645,514 (GRCm39) missense probably damaging 1.00
R5372:Atrnl1 UTSW 19 57,743,968 (GRCm39) missense probably benign
R5737:Atrnl1 UTSW 19 57,766,320 (GRCm39) missense possibly damaging 0.84
R5782:Atrnl1 UTSW 19 57,741,718 (GRCm39) missense possibly damaging 0.95
R5826:Atrnl1 UTSW 19 57,618,724 (GRCm39) nonsense probably null
R6169:Atrnl1 UTSW 19 57,630,895 (GRCm39) missense probably benign 0.00
R6242:Atrnl1 UTSW 19 57,630,910 (GRCm39) missense probably benign 0.02
R6342:Atrnl1 UTSW 19 57,626,942 (GRCm39) missense probably damaging 1.00
R6372:Atrnl1 UTSW 19 57,638,764 (GRCm39) missense probably benign 0.01
R6811:Atrnl1 UTSW 19 57,643,393 (GRCm39) missense probably damaging 0.98
R6897:Atrnl1 UTSW 19 58,030,800 (GRCm39) missense probably benign 0.01
R7024:Atrnl1 UTSW 19 57,626,882 (GRCm39) critical splice acceptor site probably null
R7085:Atrnl1 UTSW 19 57,680,289 (GRCm39) missense probably damaging 1.00
R7144:Atrnl1 UTSW 19 58,030,784 (GRCm39) missense probably damaging 1.00
R7259:Atrnl1 UTSW 19 57,924,038 (GRCm39) nonsense probably null
R7289:Atrnl1 UTSW 19 57,638,846 (GRCm39) missense probably benign 0.13
R7310:Atrnl1 UTSW 19 57,630,856 (GRCm39) missense possibly damaging 0.69
R7432:Atrnl1 UTSW 19 57,743,956 (GRCm39) missense probably damaging 1.00
R7478:Atrnl1 UTSW 19 57,684,744 (GRCm39) missense possibly damaging 0.89
R7556:Atrnl1 UTSW 19 57,643,278 (GRCm39) missense probably benign
R7567:Atrnl1 UTSW 19 57,687,955 (GRCm39) missense probably damaging 0.98
R7608:Atrnl1 UTSW 19 57,703,119 (GRCm39) missense probably damaging 1.00
R7632:Atrnl1 UTSW 19 57,618,738 (GRCm39) missense probably damaging 1.00
R7655:Atrnl1 UTSW 19 57,599,811 (GRCm39) nonsense probably null
R7656:Atrnl1 UTSW 19 57,599,811 (GRCm39) nonsense probably null
R7718:Atrnl1 UTSW 19 57,728,615 (GRCm39) nonsense probably null
R7721:Atrnl1 UTSW 19 57,684,763 (GRCm39) missense probably benign 0.00
R7726:Atrnl1 UTSW 19 57,690,504 (GRCm39) missense probably damaging 1.00
R7733:Atrnl1 UTSW 19 57,690,420 (GRCm39) missense probably benign 0.00
R7774:Atrnl1 UTSW 19 57,688,103 (GRCm39) missense probably damaging 1.00
R8010:Atrnl1 UTSW 19 57,670,878 (GRCm39) missense probably benign 0.14
R8119:Atrnl1 UTSW 19 57,630,895 (GRCm39) missense probably benign 0.00
R9242:Atrnl1 UTSW 19 57,645,660 (GRCm39) missense probably benign 0.07
R9265:Atrnl1 UTSW 19 57,766,359 (GRCm39) missense probably benign 0.11
R9272:Atrnl1 UTSW 19 57,643,420 (GRCm39) missense probably benign 0.00
R9480:Atrnl1 UTSW 19 57,690,420 (GRCm39) missense possibly damaging 0.61
R9526:Atrnl1 UTSW 19 57,617,551 (GRCm39) missense probably damaging 0.99
R9672:Atrnl1 UTSW 19 57,618,695 (GRCm39) missense possibly damaging 0.87
R9673:Atrnl1 UTSW 19 57,599,786 (GRCm39) start codon destroyed probably null 0.04
RF021:Atrnl1 UTSW 19 57,630,905 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- TCAGTGAAGTTGAACCAGGG -3'
(R):5'- TCTCGTCAGCCCCAGATAATCAG -3'

Sequencing Primer
(F):5'- AGGTAATGTTCGTCTTTAGCTTCTAC -3'
(R):5'- CCCAGATAATCAGACTCTGTGTGG -3'
Posted On 2019-09-13