Mutagenetix > Incidental Mutation

Incidental Mutation 'R7376:Hfm1'

572379

Institutional Source

Beutler Lab

Gene Symbol

Hfm1

Ensembl Gene

ENSMUSG00000043410

Gene Name

HFM1, ATP-dependent DNA helicase homolog

Synonyms

LOC381663, A330009G12Rik, Mer3, Sec63d1

MMRRC Submission

045459-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.080) question?

Stock #

R7376 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

106988058-107074187 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 107043084 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 650 (I650T)

Ref Sequence

ENSEMBL: ENSMUSP00000108310 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000112690] [ENSMUST00000117588] [ENSMUST00000148495]

AlphaFold

D3Z4R1

Predicted Effect

possibly damaging
Transcript: ENSMUST00000112690
AA Change: I650T

PolyPhen 2 Score 0.954 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000108310
Gene: ENSMUSG00000043410
AA Change: I650T

Domain	Start	End	E-Value	Type
DEXDc	276	490	3.66e-29	SMART
HELICc	571	657	1.56e-14	SMART
low complexity region	751	764	N/A	INTRINSIC
Sec63	775	1090	5.66e-60	SMART
Blast:Sec63	1130	1188	2e-18	BLAST

Predicted Effect

possibly damaging
Transcript: ENSMUST00000117588
AA Change: I650T

PolyPhen 2 Score 0.954 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000112590
Gene: ENSMUSG00000043410
AA Change: I650T

Domain	Start	End	E-Value	Type
DEXDc	276	490	3.66e-29	SMART
HELICc	571	657	1.56e-14	SMART
low complexity region	751	764	N/A	INTRINSIC
Sec63	775	1090	5.66e-60	SMART
Blast:Sec63	1130	1188	2e-18	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000148495
AA Change: I37T

PolyPhen 2 Score 0.123 (Sensitivity: 0.93; Specificity: 0.86)

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 98.9%

Validation Efficiency

98% (60/61)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is thought to be an ATP-dependent DNA helicase and is expressed mainly in germ-line cells. Defects in this gene are a cause of premature ovarian failure 9 (POF9). [provided by RefSeq, Apr 2014]
PHENOTYPE: Meiosis ais disrupted in homozygotes and bothe sexes are sterile [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	A	G	11: 9,241,118 (GRCm39)	I994V	probably benign	Het
Acan	T	G	7: 78,738,055 (GRCm39)		probably null	Het
Adamts12	G	A	15: 11,277,425 (GRCm39)	V680I	possibly damaging	Het
Adgrg7	T	C	16: 56,545,342 (GRCm39)	I712V	probably damaging	Het
Adgrl3	A	G	5: 81,942,597 (GRCm39)	H1477R	probably damaging	Het
Adgrv1	T	A	13: 81,666,245 (GRCm39)	D1937V	probably damaging	Het
Alms1	T	C	6: 85,599,088 (GRCm39)	S1305P	probably benign	Het
Banp	T	A	8: 122,701,236 (GRCm39)	M39K	probably damaging	Het
Bbs10	A	G	10: 111,135,111 (GRCm39)	T75A	probably benign	Het
BC028528	CTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTT	CTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTT	3: 95,795,448 (GRCm39)		probably benign	Het
Bltp3b	G	A	10: 89,645,518 (GRCm39)	G1197D	probably damaging	Het
Brinp2	C	T	1: 158,078,938 (GRCm39)	C295Y	probably damaging	Het
Card11	C	T	5: 140,883,993 (GRCm39)	V429I	probably benign	Het
Cdca3	G	A	6: 124,809,538 (GRCm39)	R184H	probably benign	Het
Cep104	A	G	4: 154,067,509 (GRCm39)		probably null	Het
Clspn	A	G	4: 126,484,430 (GRCm39)	K1196R	possibly damaging	Het
Cntnap5b	A	G	1: 99,894,994 (GRCm39)	T89A	possibly damaging	Het
Cpne9	A	T	6: 113,266,974 (GRCm39)	I136L	probably damaging	Het
Crat	T	A	2: 30,296,477 (GRCm39)	I330F	probably damaging	Het
Ctbp2	G	T	7: 132,615,697 (GRCm39)	Q413K	possibly damaging	Het
D630045J12Rik	T	C	6: 38,151,238 (GRCm39)	E1220G	probably damaging	Het
Dap	A	G	15: 31,235,985 (GRCm39)	D41G	probably damaging	Het
Dnah14	A	G	1: 181,590,967 (GRCm39)	I3287V	probably benign	Het
Dsp	A	G	13: 38,356,819 (GRCm39)	H233R	probably damaging	Het
Dst	T	C	1: 34,231,770 (GRCm39)	I3121T	probably benign	Het
Espnl	T	G	1: 91,250,036 (GRCm39)	L61R	probably damaging	Het
Evc2	T	C	5: 37,527,983 (GRCm39)	S331P	possibly damaging	Het
Gars1	A	G	6: 55,050,344 (GRCm39)	E535G	probably benign	Het
Iyd	T	A	10: 3,495,690 (GRCm39)	I116N	probably damaging	Het
Kif16b	A	G	2: 142,553,792 (GRCm39)	L1002S	probably damaging	Het
Kifbp	C	T	10: 62,394,843 (GRCm39)	V600I	possibly damaging	Het
Lgi1	G	A	19: 38,272,468 (GRCm39)	G113D	probably damaging	Het
Lgi2	G	A	5: 52,695,604 (GRCm39)	R452C	probably damaging	Het
Man2b2	T	G	5: 36,970,722 (GRCm39)	N764T	probably damaging	Het
Mrps18b	A	G	17: 36,221,587 (GRCm39)	I246T	probably benign	Het
Muc5b	A	G	7: 141,426,287 (GRCm39)	T4795A	possibly damaging	Het
Mybl2	G	A	2: 162,924,513 (GRCm39)	G627D	possibly damaging	Het
Ndufb8	C	T	19: 44,543,794 (GRCm39)	R16K	probably benign	Het
Or5k17	A	T	16: 58,746,121 (GRCm39)	V271E	possibly damaging	Het
P4htm	C	T	9: 108,457,991 (GRCm39)	V335M	probably damaging	Het
Pbx3	A	G	2: 34,094,889 (GRCm39)	I249T	probably damaging	Het
Plod3	G	T	5: 137,019,335 (GRCm39)	V360L	probably benign	Het
Podxl2	C	T	6: 88,826,632 (GRCm39)	D161N	probably benign	Het
Polr1b	G	T	2: 128,960,993 (GRCm39)	V651L	probably benign	Het
Prr14	T	C	7: 127,075,749 (GRCm39)	S586P	probably benign	Het
Pum3	C	T	19: 27,371,728 (GRCm39)	G575D	probably benign	Het
Rnf157	C	A	11: 116,251,192 (GRCm39)	A111S	probably benign	Het
Robo3	A	G	9: 37,344,212 (GRCm39)	L29P	probably damaging	Het
Smarca5	T	C	8: 81,452,680 (GRCm39)	N342S	probably damaging	Het
Specc1	T	A	11: 62,009,078 (GRCm39)	I198K	probably benign	Het
Tmem177	A	T	1: 119,837,744 (GRCm39)	*312R	probably null	Het
Tom1l2	A	T	11: 60,152,026 (GRCm39)	M172K	probably benign	Het
Tsc22d4	T	C	5: 137,756,414 (GRCm39)	V3A	unknown	Het
Vmn1r128	G	T	7: 21,083,668 (GRCm39)	G124V	probably damaging	Het
Vmn1r15	T	C	6: 57,235,342 (GRCm39)	I70T	probably benign	Het
Vmn2r60	A	G	7: 41,844,631 (GRCm39)	T665A	probably damaging	Het
Vmn2r83	T	C	10: 79,314,790 (GRCm39)	F346S	probably benign	Het
Wdr7	T	A	18: 63,910,691 (GRCm39)	D694E	probably damaging	Het

Other mutations in Hfm1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00944:Hfm1	APN	5	107,049,996 (GRCm39)	missense	possibly damaging	0.70
IGL01295:Hfm1	APN	5	107,065,472 (GRCm39)	missense	possibly damaging	0.46
IGL01725:Hfm1	APN	5	107,065,245 (GRCm39)	missense	probably benign	0.00
IGL01758:Hfm1	APN	5	107,052,659 (GRCm39)	missense	probably damaging	0.99
IGL01911:Hfm1	APN	5	107,059,410 (GRCm39)	missense	possibly damaging	0.92
IGL02337:Hfm1	APN	5	107,052,133 (GRCm39)	missense	possibly damaging	0.81
IGL02472:Hfm1	APN	5	107,021,794 (GRCm39)	splice site	probably benign
IGL02496:Hfm1	APN	5	107,049,627 (GRCm39)	missense	probably benign	0.00
IGL02545:Hfm1	APN	5	107,043,153 (GRCm39)	missense	probably damaging	1.00
IGL02584:Hfm1	APN	5	107,026,528 (GRCm39)	splice site	probably null
IGL02728:Hfm1	APN	5	107,026,689 (GRCm39)	missense	probably benign	0.13
IGL02881:Hfm1	APN	5	107,022,118 (GRCm39)	missense	probably damaging	1.00
IGL03108:Hfm1	APN	5	107,043,800 (GRCm39)	unclassified	probably benign
IGL03351:Hfm1	APN	5	107,059,441 (GRCm39)	nonsense	probably null
IGL03353:Hfm1	APN	5	107,004,795 (GRCm39)	missense	probably damaging	0.99
R0024:Hfm1	UTSW	5	107,004,790 (GRCm39)	missense	probably benign	0.41
R0024:Hfm1	UTSW	5	107,004,790 (GRCm39)	missense	probably benign	0.41
R0094:Hfm1	UTSW	5	107,065,344 (GRCm39)	missense	probably benign
R0633:Hfm1	UTSW	5	107,065,467 (GRCm39)	missense	possibly damaging	0.56
R0644:Hfm1	UTSW	5	107,046,122 (GRCm39)	critical splice donor site	probably null
R1078:Hfm1	UTSW	5	107,026,696 (GRCm39)	missense	probably damaging	1.00
R1120:Hfm1	UTSW	5	107,052,084 (GRCm39)	splice site	probably benign
R1166:Hfm1	UTSW	5	107,059,277 (GRCm39)	missense	probably benign	0.00
R1242:Hfm1	UTSW	5	107,022,767 (GRCm39)	missense	probably damaging	0.99
R1414:Hfm1	UTSW	5	107,020,219 (GRCm39)	missense	probably benign	0.01
R1450:Hfm1	UTSW	5	107,066,324 (GRCm39)	missense	probably damaging	0.99
R1529:Hfm1	UTSW	5	107,000,989 (GRCm39)	missense	probably benign	0.00
R1622:Hfm1	UTSW	5	107,041,389 (GRCm39)	missense	possibly damaging	0.58
R1710:Hfm1	UTSW	5	107,043,869 (GRCm39)	missense	probably damaging	0.96
R1710:Hfm1	UTSW	5	107,028,380 (GRCm39)	missense	probably damaging	1.00
R1757:Hfm1	UTSW	5	107,028,226 (GRCm39)	splice site	probably null
R1856:Hfm1	UTSW	5	106,995,542 (GRCm39)	missense	probably benign	0.00
R1984:Hfm1	UTSW	5	107,046,442 (GRCm39)	missense	probably damaging	0.98
R1985:Hfm1	UTSW	5	107,046,442 (GRCm39)	missense	probably damaging	0.98
R2040:Hfm1	UTSW	5	107,049,684 (GRCm39)	missense	probably damaging	1.00
R2122:Hfm1	UTSW	5	107,044,121 (GRCm39)	missense	probably damaging	1.00
R2426:Hfm1	UTSW	5	106,995,519 (GRCm39)	splice site	probably null
R2474:Hfm1	UTSW	5	107,020,282 (GRCm39)	missense	possibly damaging	0.81
R2926:Hfm1	UTSW	5	107,022,148 (GRCm39)	nonsense	probably null
R2944:Hfm1	UTSW	5	107,020,196 (GRCm39)	missense	probably damaging	1.00
R3705:Hfm1	UTSW	5	107,040,705 (GRCm39)	unclassified	probably benign
R4256:Hfm1	UTSW	5	107,052,663 (GRCm39)	missense	possibly damaging	0.83
R4455:Hfm1	UTSW	5	107,034,374 (GRCm39)	splice site	probably null
R4538:Hfm1	UTSW	5	107,022,756 (GRCm39)	missense	possibly damaging	0.47
R4540:Hfm1	UTSW	5	107,022,087 (GRCm39)	nonsense	probably null
R4591:Hfm1	UTSW	5	106,995,533 (GRCm39)	missense	probably benign	0.08
R4745:Hfm1	UTSW	5	107,049,709 (GRCm39)	missense	possibly damaging	0.87
R4747:Hfm1	UTSW	5	107,065,389 (GRCm39)	missense	probably benign
R4765:Hfm1	UTSW	5	106,990,405 (GRCm39)	missense	probably benign	0.21
R4821:Hfm1	UTSW	5	107,002,606 (GRCm39)	critical splice donor site	probably null
R4842:Hfm1	UTSW	5	107,040,617 (GRCm39)	missense	probably damaging	1.00
R4944:Hfm1	UTSW	5	107,022,079 (GRCm39)	missense	possibly damaging	0.46
R5093:Hfm1	UTSW	5	107,049,597 (GRCm39)	missense	probably damaging	1.00
R5399:Hfm1	UTSW	5	107,065,428 (GRCm39)	missense	possibly damaging	0.91
R5414:Hfm1	UTSW	5	107,049,942 (GRCm39)	missense	probably damaging	1.00
R5436:Hfm1	UTSW	5	107,040,638 (GRCm39)	missense	possibly damaging	0.61
R5459:Hfm1	UTSW	5	107,052,629 (GRCm39)	missense	probably damaging	1.00
R5485:Hfm1	UTSW	5	106,995,528 (GRCm39)	critical splice donor site	probably null
R5585:Hfm1	UTSW	5	107,059,305 (GRCm39)	missense	probably benign	0.05
R5631:Hfm1	UTSW	5	107,052,629 (GRCm39)	missense	probably damaging	1.00
R5705:Hfm1	UTSW	5	107,059,319 (GRCm39)	missense	probably benign	0.21
R5804:Hfm1	UTSW	5	107,026,455 (GRCm39)	splice site	probably null
R5959:Hfm1	UTSW	5	107,022,783 (GRCm39)	missense	probably damaging	1.00
R6046:Hfm1	UTSW	5	107,046,509 (GRCm39)	splice site	probably null
R6191:Hfm1	UTSW	5	107,034,419 (GRCm39)	missense	possibly damaging	0.95
R6345:Hfm1	UTSW	5	106,989,504 (GRCm39)	missense	probably benign
R6580:Hfm1	UTSW	5	106,995,575 (GRCm39)	missense	probably benign	0.00
R6651:Hfm1	UTSW	5	106,995,553 (GRCm39)	missense	probably benign	0.00
R6761:Hfm1	UTSW	5	107,043,145 (GRCm39)	missense	probably damaging	1.00
R6835:Hfm1	UTSW	5	107,026,681 (GRCm39)	nonsense	probably null
R6891:Hfm1	UTSW	5	107,065,240 (GRCm39)	missense	possibly damaging	0.49
R6924:Hfm1	UTSW	5	106,998,276 (GRCm39)	splice site	probably null
R6980:Hfm1	UTSW	5	107,028,343 (GRCm39)	missense	probably benign	0.31
R7054:Hfm1	UTSW	5	107,043,909 (GRCm39)	missense	probably benign	0.01
R7058:Hfm1	UTSW	5	107,059,306 (GRCm39)	missense	probably benign	0.04
R7189:Hfm1	UTSW	5	107,049,569 (GRCm39)	critical splice donor site	probably null
R7250:Hfm1	UTSW	5	107,052,197 (GRCm39)	missense	probably benign	0.00
R7577:Hfm1	UTSW	5	107,043,909 (GRCm39)	missense	probably benign	0.01
R7636:Hfm1	UTSW	5	107,065,332 (GRCm39)	missense	probably benign	0.02
R7639:Hfm1	UTSW	5	107,046,341 (GRCm39)	missense	possibly damaging	0.46
R7639:Hfm1	UTSW	5	107,037,791 (GRCm39)	missense	probably benign	0.03
R7763:Hfm1	UTSW	5	107,029,727 (GRCm39)	missense	probably damaging	1.00
R7828:Hfm1	UTSW	5	107,029,657 (GRCm39)	critical splice donor site	probably null
R7905:Hfm1	UTSW	5	107,046,419 (GRCm39)	missense	probably damaging	1.00
R8160:Hfm1	UTSW	5	107,043,899 (GRCm39)	missense	probably null	0.00
R8477:Hfm1	UTSW	5	107,029,684 (GRCm39)	missense	probably benign	0.01
R8739:Hfm1	UTSW	5	107,046,371 (GRCm39)	missense	probably damaging	0.96
R8968:Hfm1	UTSW	5	107,065,439 (GRCm39)	missense	probably benign	0.00
R9072:Hfm1	UTSW	5	107,046,146 (GRCm39)	missense	probably benign	0.04
R9073:Hfm1	UTSW	5	107,046,146 (GRCm39)	missense	probably benign	0.04
R9152:Hfm1	UTSW	5	106,989,611 (GRCm39)	missense	probably benign	0.01
R9234:Hfm1	UTSW	5	107,041,334 (GRCm39)	missense	probably benign
R9244:Hfm1	UTSW	5	107,022,766 (GRCm39)	missense	probably damaging	0.96
R9576:Hfm1	UTSW	5	107,021,938 (GRCm39)	missense	probably benign	0.00
R9649:Hfm1	UTSW	5	107,066,329 (GRCm39)	missense	possibly damaging	0.82
R9743:Hfm1	UTSW	5	107,022,125 (GRCm39)	missense	possibly damaging	0.55
R9782:Hfm1	UTSW	5	107,021,896 (GRCm39)	missense	probably benign	0.38
R9789:Hfm1	UTSW	5	107,065,346 (GRCm39)	missense	probably benign	0.00
Z1177:Hfm1	UTSW	5	107,019,686 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- ATCCGCAGAGAGCAGCTTAG -3'
(R):5'- AGCAGATATCTTCCCAGGACAATTAAG -3'

Sequencing Primer
(F):5'- GTGTATATATCCCAGCTAGTGAGTC -3'
(R):5'- AGTTATAAGGCTTGGTTATCCCTCAC -3'

Posted On

2019-09-13