Mutagenetix > Incidental Mutation

Incidental Mutation 'R7382:Stxbp1'

572771

Institutional Source

Beutler Lab

Gene Symbol

Stxbp1

Ensembl Gene

ENSMUSG00000026797

Gene Name

syntaxin binding protein 1

Synonyms

Rb-sec1, Munc18-1, Munc-18a, Sxtbp1, Unc18h, N-sec1, nsec1

MMRRC Submission

045464-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.610) question?

Stock #

R7382 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

32787602-32847245 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 32798168 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 495 (D495G)

Ref Sequence

ENSEMBL: ENSMUSP00000089051 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000050000] [ENSMUST00000077458]

AlphaFold

O08599

Predicted Effect

probably damaging
Transcript: ENSMUST00000050000
AA Change: D495G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000052440
Gene: ENSMUSG00000026797
AA Change: D495G

Domain	Start	End	E-Value	Type
Pfam:Sec1	28	582	9.8e-152	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000077458
AA Change: D495G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000089051
Gene: ENSMUSG00000026797
AA Change: D495G

Domain	Start	End	E-Value	Type
Pfam:Sec1	29	581	2.8e-110	PFAM

Meta Mutation Damage Score

0.8591

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.4%

Validation Efficiency

99% (77/78)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a syntaxin-binding protein. The encoded protein appears to play a role in release of neurotransmitters via regulation of syntaxin, a transmembrane attachment protein receptor. Mutations in this gene have been associated with infantile epileptic encephalopathy-4. Alternatively spliced transcript variants have been described. [provided by RefSeq, Feb 2010]
PHENOTYPE: Mice homozygous for a null allele exhibit total loss of neurotransmitter secretion from synaptic vesicles throughout development and massive neuron apoptosis after initial synaptogenesis, leading to widespread neurodegeneration and complete neonatal lethality. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610008E11Rik	A	T	10: 79,067,269 (GRCm38)	H404Q	probably damaging	Het
Aadacl2fm2	T	A	3: 59,743,616 (GRCm38)	M53K	probably benign	Het
Adam8	T	A	7: 139,990,107 (GRCm38)	T82S	possibly damaging	Het
Adgrl2	T	G	3: 148,817,283 (GRCm38)	Q435P		Het
Ahr	A	T	12: 35,504,515 (GRCm38)	M535K	probably damaging	Het
Akap6	A	G	12: 53,142,171 (GRCm38)	I2123V	probably benign	Het
Ankrd2	G	T	19: 42,044,972 (GRCm38)	G318C		Het
Ap4e1	T	A	2: 127,008,902 (GRCm38)		probably null	Het
Atp8a2	G	A	14: 59,654,594 (GRCm38)	P1102S	probably benign	Het
Cacna2d4	C	T	6: 119,239,087 (GRCm38)	S105F	probably damaging	Het
Cad	C	A	5: 31,075,829 (GRCm38)	P1872T	probably benign	Het
Catsperg1	A	G	7: 29,204,844 (GRCm38)	F251L	probably benign	Het
Ccdc18	C	A	5: 108,139,007 (GRCm38)	Q136K	probably damaging	Het
Cd163	A	G	6: 124,311,312 (GRCm38)		probably null	Het
Cd209d	A	T	8: 3,877,965 (GRCm38)	Y46*	probably null	Het
Cdk5rap2	A	T	4: 70,290,025 (GRCm38)	M728K	probably benign	Het
Cdon	A	G	9: 35,478,648 (GRCm38)	D866G	probably damaging	Het
Cenpl	A	G	1: 161,078,461 (GRCm38)	H135R	probably benign	Het
Cep20	TTGTG	TTG	16: 14,300,145 (GRCm38)		probably null	Het
Clstn2	A	T	9: 97,799,398 (GRCm38)	L63*	probably null	Het
Cpeb4	A	G	11: 31,872,828 (GRCm38)	T181A	probably damaging	Het
Dlgap1	A	G	17: 70,787,174 (GRCm38)	E830G	probably damaging	Het
Endou	T	A	15: 97,718,926 (GRCm38)	K239*	probably null	Het
Ezh2	T	C	6: 47,551,836 (GRCm38)	N263S	possibly damaging	Het
Fbxw2	T	C	2: 34,807,302 (GRCm38)	D351G	probably benign	Het
Fer1l4	A	T	2: 156,020,749 (GRCm38)	Y1720*	probably null	Het
Fmo9	A	T	1: 166,663,660 (GRCm38)		probably null	Het
Frmpd1	T	A	4: 45,278,880 (GRCm38)	V535E	probably benign	Het
Fxr2	T	C	11: 69,641,556 (GRCm38)	V139A	probably benign	Het
Gpr180	T	G	14: 118,162,623 (GRCm38)	V401G	possibly damaging	Het
Heatr5b	G	T	17: 78,803,507 (GRCm38)	R971S	possibly damaging	Het
Igkv8-34	C	A	6: 70,044,119 (GRCm38)	A120S	probably benign	Het
Inpp5b	T	A	4: 124,751,577 (GRCm38)	H219Q	probably benign	Het
Itprid1	G	T	6: 55,978,419 (GRCm38)	G1004V	probably benign	Het
Kremen2	T	C	17: 23,743,552 (GRCm38)		probably null	Het
Mael	G	A	1: 166,201,598 (GRCm38)	P419S	probably benign	Het
Map1a	A	G	2: 121,290,785 (GRCm38)	T102A	probably damaging	Het
Mfsd2a	A	T	4: 122,952,123 (GRCm38)	I119N	possibly damaging	Het
Muc5b	T	C	7: 141,858,948 (GRCm38)	V1877A	unknown	Het
Myo5c	A	C	9: 75,304,050 (GRCm38)	S1733R	probably damaging	Het
Nelfcd	T	C	2: 174,423,383 (GRCm38)	V248A	probably benign	Het
Npc1	A	T	18: 12,201,706 (GRCm38)	I663N	probably damaging	Het
Olig3	T	A	10: 19,356,665 (GRCm38)	S13T	unknown	Het
Or1j17	G	T	2: 36,688,034 (GRCm38)	E11*	probably null	Het
Or8k39	T	C	2: 86,732,785 (GRCm38)	I276V	probably benign	Het
Piezo2	A	C	18: 63,017,519 (GRCm38)		probably null	Het
Pkd1l2	G	T	8: 117,054,871 (GRCm38)	L812M	possibly damaging	Het
Plcd1	G	A	9: 119,074,691 (GRCm38)	T387I	probably damaging	Het
Ppara	C	T	15: 85,787,228 (GRCm38)	S110L	probably damaging	Het
Ranbp9	C	T	13: 43,425,114 (GRCm38)	R161Q	probably damaging	Het
Rufy2	G	T	10: 62,997,969 (GRCm38)	R270L	probably benign	Het
Septin12	C	T	16: 4,988,482 (GRCm38)	E272K	probably damaging	Het
Sgms1	T	C	19: 32,159,782 (GRCm38)	E128G	possibly damaging	Het
Sh3bgr	G	A	16: 96,205,893 (GRCm38)	S21N	probably benign	Het
Sil1	A	T	18: 35,325,413 (GRCm38)	D176E	probably benign	Het
Slc13a2	A	T	11: 78,404,795 (GRCm38)	Y82N	probably damaging	Het
Slc41a1	C	T	1: 131,846,632 (GRCm38)	P479L	probably damaging	Het
Smarca4	A	G	9: 21,658,933 (GRCm38)	K744R	probably damaging	Het
Sugp2	T	C	8: 70,242,844 (GRCm38)	S156P	probably benign	Het
Syt3	A	T	7: 44,392,746 (GRCm38)	D343V	probably damaging	Het
Tbl3	G	T	17: 24,705,291 (GRCm38)	T164N	probably benign	Het
Tbpl2	A	T	2: 24,087,314 (GRCm38)		probably null	Het
Tcf7l2	T	A	19: 55,926,740 (GRCm38)	W461R	unknown	Het
Tmprss11c	A	T	5: 86,231,864 (GRCm38)	F395Y	probably benign	Het
Tnc	A	T	4: 64,014,043 (GRCm38)	Y711*	probably null	Het
Tnpo2	G	A	8: 85,050,119 (GRCm38)	R485H	probably damaging	Het
Ttc41	A	G	10: 86,776,510 (GRCm38)	K1216E	probably damaging	Het
Ube2q2	A	C	9: 55,163,014 (GRCm38)	D80A	probably damaging	Het
Ube2u	A	T	4: 100,532,182 (GRCm38)	K227*	probably null	Het
Uhrf2	T	C	19: 30,071,388 (GRCm38)	Y265H	possibly damaging	Het
Vmn1r208	T	G	13: 22,772,586 (GRCm38)	Y247S	probably damaging	Het
Vmn2r27	A	G	6: 124,197,317 (GRCm38)	C525R	probably damaging	Het
Vps13a	T	C	19: 16,619,485 (GRCm38)	T3090A	probably damaging	Het
Whrn	T	C	4: 63,418,336 (GRCm38)	K674R	probably benign	Het
Zfp202	G	T	9: 40,211,505 (GRCm38)	R521I	probably damaging	Het
Zfp433	T	C	10: 81,720,825 (GRCm38)	V387A	probably benign	Het
Zpld1	T	C	16: 55,246,683 (GRCm38)		probably null	Het

Other mutations in Stxbp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01989:Stxbp1	APN	2	32,812,064 (GRCm38)	missense	probably benign	0.00
IGL02743:Stxbp1	APN	2	32,819,901 (GRCm38)	missense	probably damaging	0.98
volume	UTSW	2	32,801,893 (GRCm38)	missense	probably damaging	0.99
volume2	UTSW	2	32,801,883 (GRCm38)	missense	possibly damaging	0.95
P0021:Stxbp1	UTSW	2	32,823,538 (GRCm38)	missense	probably damaging	0.96
R0217:Stxbp1	UTSW	2	32,801,870 (GRCm38)	missense	possibly damaging	0.69
R0269:Stxbp1	UTSW	2	32,802,783 (GRCm38)	missense	probably damaging	1.00
R0285:Stxbp1	UTSW	2	32,823,542 (GRCm38)	missense	probably benign	0.00
R0335:Stxbp1	UTSW	2	32,802,905 (GRCm38)	splice site	probably benign
R0565:Stxbp1	UTSW	2	32,819,848 (GRCm38)	missense	probably benign	0.07
R0617:Stxbp1	UTSW	2	32,802,783 (GRCm38)	missense	probably damaging	1.00
R0690:Stxbp1	UTSW	2	32,800,695 (GRCm38)	splice site	probably benign
R1022:Stxbp1	UTSW	2	32,814,967 (GRCm38)	splice site	probably null
R1024:Stxbp1	UTSW	2	32,814,967 (GRCm38)	splice site	probably null
R1295:Stxbp1	UTSW	2	32,794,636 (GRCm38)	missense	probably benign	0.18
R1296:Stxbp1	UTSW	2	32,794,636 (GRCm38)	missense	probably benign	0.18
R1472:Stxbp1	UTSW	2	32,794,636 (GRCm38)	missense	probably benign	0.18
R1699:Stxbp1	UTSW	2	32,800,617 (GRCm38)	missense	probably damaging	0.99
R1744:Stxbp1	UTSW	2	32,806,719 (GRCm38)	critical splice donor site	probably null
R2004:Stxbp1	UTSW	2	32,798,189 (GRCm38)	missense	probably damaging	0.99
R2151:Stxbp1	UTSW	2	32,802,856 (GRCm38)	missense	probably damaging	1.00
R2153:Stxbp1	UTSW	2	32,802,856 (GRCm38)	missense	probably damaging	1.00
R2154:Stxbp1	UTSW	2	32,802,856 (GRCm38)	missense	probably damaging	1.00
R5170:Stxbp1	UTSW	2	32,794,674 (GRCm38)	missense	probably benign	0.01
R6083:Stxbp1	UTSW	2	32,796,018 (GRCm38)	missense	possibly damaging	0.95
R6295:Stxbp1	UTSW	2	32,794,609 (GRCm38)	missense	probably damaging	0.98
R6504:Stxbp1	UTSW	2	32,801,883 (GRCm38)	missense	possibly damaging	0.95
R6770:Stxbp1	UTSW	2	32,819,889 (GRCm38)	missense	probably benign	0.01
R6954:Stxbp1	UTSW	2	32,801,893 (GRCm38)	missense	probably damaging	0.99
R7283:Stxbp1	UTSW	2	32,815,014 (GRCm38)	missense	probably damaging	1.00
R7541:Stxbp1	UTSW	2	32,818,505 (GRCm38)	missense	probably damaging	0.99
R7734:Stxbp1	UTSW	2	32,801,820 (GRCm38)	missense	probably benign	0.00
R8364:Stxbp1	UTSW	2	32,806,762 (GRCm38)	missense	possibly damaging	0.72
R8462:Stxbp1	UTSW	2	32,817,281 (GRCm38)	splice site	probably null
R9143:Stxbp1	UTSW	2	32,798,145 (GRCm38)	missense	probably damaging	0.99
R9246:Stxbp1	UTSW	2	32,789,574 (GRCm38)	missense	possibly damaging	0.85
R9267:Stxbp1	UTSW	2	32,818,505 (GRCm38)	missense	probably damaging	1.00
R9501:Stxbp1	UTSW	2	32,802,813 (GRCm38)	missense	probably benign	0.00
R9600:Stxbp1	UTSW	2	32,811,108 (GRCm38)	missense	possibly damaging	0.80
RF010:Stxbp1	UTSW	2	32,821,915 (GRCm38)	missense	probably benign	0.06
X0060:Stxbp1	UTSW	2	32,802,768 (GRCm38)	missense	probably damaging	1.00
Z1177:Stxbp1	UTSW	2	32,809,128 (GRCm38)	missense	probably damaging	0.99
Z1177:Stxbp1	UTSW	2	32,802,754 (GRCm38)	missense	probably null	1.00

Predicted Primers

PCR Primer
(F):5'- CGCCATAATGGATGACGTGG -3'
(R):5'- TCTGACAGAGTGACTCATGGGC -3'

Sequencing Primer
(F):5'- CGTGGGAAGGTTCAAATGGCAC -3'
(R):5'- CTGCTACAGAAGGAGTGTCC -3'

Posted On

2019-09-13