Mutagenetix > Incidental Mutation

Incidental Mutation 'R7386:Zfp398'

573086

Institutional Source

Beutler Lab

Gene Symbol

Zfp398

Ensembl Gene

ENSMUSG00000062519

Gene Name

zinc finger protein 398

Synonyms

5730513I23Rik

MMRRC Submission

045468-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7386 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

47812595-47850471 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 47835884 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Isoleucine at position 148 (V148I)

Ref Sequence

ENSEMBL: ENSMUSP00000078806 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000079881] [ENSMUST00000114598]

AlphaFold

Q8BV16

Predicted Effect

probably benign
Transcript: ENSMUST00000079881
AA Change: V148I

PolyPhen 2 Score 0.055 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000078806
Gene: ENSMUSG00000062519
AA Change: V148I

Domain	Start	End	E-Value	Type
low complexity region	17	29	N/A	INTRINSIC
Pfam:DUF3669	43	113	2.9e-10	PFAM
KRAB	143	203	1.38e-17	SMART
low complexity region	278	296	N/A	INTRINSIC
ZnF_C2H2	344	365	6.31e1	SMART
ZnF_C2H2	399	421	3.58e-2	SMART
ZnF_C2H2	428	450	1.36e-2	SMART
ZnF_C2H2	456	478	1.69e-3	SMART
ZnF_C2H2	484	506	2.24e-3	SMART
ZnF_C2H2	512	534	6.78e-3	SMART
ZnF_C2H2	540	562	9.08e-4	SMART
ZnF_C2H2	568	591	5.14e-3	SMART
low complexity region	598	611	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000114598
AA Change: V16I

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000110245
Gene: ENSMUSG00000062519
AA Change: V16I

Domain	Start	End	E-Value	Type
KRAB	11	71	1.38e-17	SMART
low complexity region	146	164	N/A	INTRINSIC
ZnF_C2H2	212	233	6.31e1	SMART
ZnF_C2H2	267	289	3.58e-2	SMART
ZnF_C2H2	296	318	1.36e-2	SMART
ZnF_C2H2	324	346	1.69e-3	SMART
ZnF_C2H2	352	374	2.24e-3	SMART
ZnF_C2H2	380	402	6.78e-3	SMART
ZnF_C2H2	408	430	9.08e-4	SMART
ZnF_C2H2	436	459	5.14e-3	SMART
low complexity region	466	479	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.2%

Validation Efficiency

100% (66/66)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the Kruppel family of C2H2-type zinc-finger transcription factor proteins. The encoded protein acts as a transcriptional activator. Two transcript variants encoding distinct isoforms have been identified for this gene. Other transcript variants have been described, but their full length sequence has not been determined. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930546C10Rik	A	T	18: 69,083,208 (GRCm39)	M2K	unknown	Het
Ablim3	T	C	18: 61,955,065 (GRCm39)	D308G	probably damaging	Het
Adamts17	A	T	7: 66,618,597 (GRCm39)	K370N	probably benign	Het
Adcy4	T	C	14: 56,015,784 (GRCm39)	Y435C	probably damaging	Het
Adgb	A	T	10: 10,253,693 (GRCm39)	F1216I	possibly damaging	Het
Akr1a1	G	A	4: 116,498,251 (GRCm39)	T98I	probably damaging	Het
Alyref2	G	T	1: 171,331,101 (GRCm39)		probably benign	Het
Ank3	T	A	10: 69,658,079 (GRCm39)	H168Q	unknown	Het
Bnc1	A	C	7: 81,624,240 (GRCm39)	L329R	possibly damaging	Het
Btaf1	G	A	19: 36,935,782 (GRCm39)	A191T	probably benign	Het
Carmil3	T	G	14: 55,735,204 (GRCm39)		probably null	Het
Cd200r1	C	A	16: 44,610,211 (GRCm39)	D143E	probably benign	Het
Cep112	A	G	11: 108,699,507 (GRCm39)	H98R	probably benign	Het
Cmya5	T	A	13: 93,205,831 (GRCm39)	Q3346L	probably damaging	Het
Cpne4	T	A	9: 104,749,939 (GRCm39)	V81E	possibly damaging	Het
Ctnnd2	T	A	15: 30,966,914 (GRCm39)	M955K	probably damaging	Het
Ctsj	A	T	13: 61,148,373 (GRCm39)	M307K	possibly damaging	Het
Ddhd2	G	T	8: 26,244,318 (GRCm39)	R103S	possibly damaging	Het
Depdc5	A	G	5: 33,085,280 (GRCm39)	T700A	probably benign	Het
Dhx57	A	C	17: 80,575,006 (GRCm39)	D657E	possibly damaging	Het
Dmbt1	G	A	7: 130,713,965 (GRCm39)	G1678S	unknown	Het
Dnajb1	A	G	8: 84,336,932 (GRCm39)	D234G	probably benign	Het
Dsc2	C	T	18: 20,174,983 (GRCm39)	V431M	possibly damaging	Het
Evi5	C	A	5: 107,957,689 (GRCm39)		probably null	Het
Exoc2	T	C	13: 31,090,646 (GRCm39)		probably null	Het
Foxo3	T	C	10: 42,073,356 (GRCm39)	D387G	probably benign	Het
Gda	A	G	19: 21,387,250 (GRCm39)	I325T	probably benign	Het
Iqgap1	A	G	7: 80,375,790 (GRCm39)	S1362P	probably damaging	Het
Klf10	G	T	15: 38,297,193 (GRCm39)	N282K	possibly damaging	Het
Mettl13	A	G	1: 162,375,723 (GRCm39)	Y35H	probably damaging	Het
Mill2	A	G	7: 18,592,215 (GRCm39)	T279A	probably benign	Het
Ncaph2	G	A	15: 89,254,459 (GRCm39)	W386*	probably null	Het
Nploc4	A	T	11: 120,299,707 (GRCm39)	S338T	probably benign	Het
Nrip1	T	C	16: 76,090,775 (GRCm39)	S261G	probably damaging	Het
Or2y16	T	C	11: 49,335,227 (GRCm39)	F183S	possibly damaging	Het
Or5al1	A	G	2: 85,989,874 (GRCm39)	V280A	possibly damaging	Het
Or7a38	T	A	10: 78,752,677 (GRCm39)	M1K	probably null	Het
Palld	A	G	8: 61,985,086 (GRCm39)	F1060L	unknown	Het
Pfas	C	G	11: 68,894,600 (GRCm39)	V22L	probably benign	Het
Pygo2	T	G	3: 89,340,128 (GRCm39)	F175L	probably benign	Het
Rnf2	T	C	1: 151,347,131 (GRCm39)	E316G	probably damaging	Het
Rtn4	T	A	11: 29,657,772 (GRCm39)	M642K	probably damaging	Het
Saa3	A	G	7: 46,364,347 (GRCm39)	C60R	unknown	Het
Saxo5	A	G	8: 3,537,079 (GRCm39)	K475R	probably benign	Het
Scap	A	G	9: 110,202,237 (GRCm39)	T202A	probably benign	Het
Scn9a	T	A	2: 66,370,894 (GRCm39)	D562V	probably damaging	Het
Slc6a19	A	T	13: 73,838,010 (GRCm39)	V163E	possibly damaging	Het
Smc5	G	A	19: 23,192,539 (GRCm39)	H850Y	possibly damaging	Het
Spef1l	A	T	7: 139,555,965 (GRCm39)	C225*	probably null	Het
Sqle	G	A	15: 59,202,603 (GRCm39)	R519Q	probably benign	Het
Sulf1	T	C	1: 12,908,585 (GRCm39)	Y533H	probably benign	Het
Thbs2	A	G	17: 14,893,412 (GRCm39)	S923P	possibly damaging	Het
Themis	A	G	10: 28,665,743 (GRCm39)	D602G	probably benign	Het
Tmem132c	A	G	5: 127,640,990 (GRCm39)	K1054E	probably benign	Het
Tmem161b	C	A	13: 84,370,537 (GRCm39)		probably benign	Het
Tnrc6c	T	A	11: 117,612,780 (GRCm39)	C313S	probably benign	Het
Top6bl	G	A	19: 4,713,586 (GRCm39)	R285*	probably null	Het
Tpm1	T	C	9: 66,935,449 (GRCm39)	I284M	probably benign	Het
Trpm4	A	T	7: 44,964,064 (GRCm39)	L722H	possibly damaging	Het
Trub2	T	G	2: 29,676,607 (GRCm39)	Q41P	probably benign	Het
Usp17le	A	C	7: 104,417,514 (GRCm39)		probably null	Het
Zfp40	T	C	17: 23,395,981 (GRCm39)	E202G	probably damaging	Het
Zfp618	T	A	4: 63,013,622 (GRCm39)		probably null	Het
Zfp667	T	A	7: 6,308,949 (GRCm39)	I539N	possibly damaging	Het
Zfp738	A	T	13: 67,818,369 (GRCm39)	C541S	probably damaging	Het

Other mutations in Zfp398

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01420:Zfp398	APN	6	47,842,868 (GRCm39)	missense	probably benign
IGL01543:Zfp398	APN	6	47,842,997 (GRCm39)	missense	probably damaging	1.00
IGL01822:Zfp398	APN	6	47,843,205 (GRCm39)	missense	probably damaging	1.00
IGL02118:Zfp398	APN	6	47,835,879 (GRCm39)	missense	probably damaging	1.00
IGL02454:Zfp398	APN	6	47,817,301 (GRCm39)	missense	possibly damaging	0.93
IGL02725:Zfp398	APN	6	47,842,737 (GRCm39)	missense	probably benign	0.00
R0453:Zfp398	UTSW	6	47,842,782 (GRCm39)	missense	probably benign	0.01
R0635:Zfp398	UTSW	6	47,840,074 (GRCm39)	missense	probably damaging	1.00
R1759:Zfp398	UTSW	6	47,836,412 (GRCm39)	missense	possibly damaging	0.92
R2366:Zfp398	UTSW	6	47,840,143 (GRCm39)	missense	possibly damaging	0.93
R2696:Zfp398	UTSW	6	47,843,879 (GRCm39)	makesense	probably null
R4090:Zfp398	UTSW	6	47,843,159 (GRCm39)	missense	probably damaging	1.00
R4157:Zfp398	UTSW	6	47,812,843 (GRCm39)	missense	probably benign
R4610:Zfp398	UTSW	6	47,817,361 (GRCm39)	missense	probably damaging	1.00
R4784:Zfp398	UTSW	6	47,817,186 (GRCm39)	missense	probably benign
R4849:Zfp398	UTSW	6	47,836,446 (GRCm39)	missense	possibly damaging	0.79
R5166:Zfp398	UTSW	6	47,842,838 (GRCm39)	missense	probably benign
R5289:Zfp398	UTSW	6	47,840,115 (GRCm39)	missense	probably benign
R5877:Zfp398	UTSW	6	47,817,638 (GRCm39)	intron	probably benign
R6326:Zfp398	UTSW	6	47,843,355 (GRCm39)	missense	possibly damaging	0.90
R6383:Zfp398	UTSW	6	47,843,529 (GRCm39)	missense	probably damaging	1.00
R6825:Zfp398	UTSW	6	47,843,265 (GRCm39)	missense	probably damaging	1.00
R6882:Zfp398	UTSW	6	47,843,016 (GRCm39)	missense	probably damaging	0.99
R7038:Zfp398	UTSW	6	47,843,243 (GRCm39)	missense	probably damaging	1.00
R7114:Zfp398	UTSW	6	47,842,910 (GRCm39)	missense	probably benign	0.00
R7519:Zfp398	UTSW	6	47,836,407 (GRCm39)	missense	probably benign	0.00
R7525:Zfp398	UTSW	6	47,842,752 (GRCm39)	missense	probably benign
R7571:Zfp398	UTSW	6	47,843,666 (GRCm39)	missense	probably damaging	1.00
R8374:Zfp398	UTSW	6	47,836,468 (GRCm39)	critical splice donor site	probably null
R9055:Zfp398	UTSW	6	47,843,319 (GRCm39)	missense	possibly damaging	0.73
Z1176:Zfp398	UTSW	6	47,843,789 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CAGCACATGTGTAAAGGTACTAGG -3'
(R):5'- GAAAGTGTTTGAGTCCTCATGG -3'

Sequencing Primer
(F):5'- AGGCACTTCTCTTAGGTTACAAGGC -3'
(R):5'- GGACTGTGGCACCTCATTCAATAG -3'

Posted On

2019-09-13