Incidental Mutation 'R7395:Hdac10'
ID 573776
Institutional Source Beutler Lab
Gene Symbol Hdac10
Ensembl Gene ENSMUSG00000062906
Gene Name histone deacetylase 10
Synonyms
MMRRC Submission 045477-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7395 (G1)
Quality Score 225.009
Status Validated
Chromosome 15
Chromosomal Location 89007510-89012903 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 89012487 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Isoleucine at position 32 (T32I)
Ref Sequence ENSEMBL: ENSMUSP00000080832 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000082197] [ENSMUST00000088827] [ENSMUST00000109347]
AlphaFold Q6P3E7
Predicted Effect probably benign
Transcript: ENSMUST00000082197
AA Change: T32I

PolyPhen 2 Score 0.141 (Sensitivity: 0.92; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000080832
Gene: ENSMUSG00000062906
AA Change: T32I

DomainStartEndE-ValueType
Pfam:Hist_deacetyl 13 322 2.1e-85 PFAM
low complexity region 478 489 N/A INTRINSIC
low complexity region 583 595 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000088827
SMART Domains Protein: ENSMUSP00000086207
Gene: ENSMUSG00000022610

DomainStartEndE-ValueType
S_TKc 27 311 1.63e-96 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000109347
AA Change: T32I

PolyPhen 2 Score 0.028 (Sensitivity: 0.95; Specificity: 0.81)
SMART Domains Protein: ENSMUSP00000104971
Gene: ENSMUSG00000062906
AA Change: T32I

DomainStartEndE-ValueType
Pfam:Hist_deacetyl 13 251 6.1e-66 PFAM
low complexity region 270 282 N/A INTRINSIC
low complexity region 398 409 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.8%
Validation Efficiency 99% (92/93)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the histone deacetylase family, members of which deacetylate lysine residues on the N-terminal part of the core histones. Histone deacetylation modulates chromatin structure, and plays an important role in transcriptional regulation, cell cycle progression, and developmental events. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2011]
Allele List at MGI
Other mutations in this stock
Total: 94 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
3830403N18Rik G T X: 55,184,140 (GRCm39) probably null Het
4930433I11Rik A T 7: 40,639,102 (GRCm39) T13S probably damaging Het
Abca13 A G 11: 9,241,658 (GRCm39) I1174V probably benign Het
Acoxl G A 2: 127,726,336 (GRCm39) V237M probably damaging Het
Adam33 A C 2: 130,903,089 (GRCm39) W52G probably benign Het
Adgrv1 T C 13: 81,707,467 (GRCm39) H1313R probably damaging Het
Ap3d1 T C 10: 80,566,716 (GRCm39) T89A probably benign Het
Armc8 T C 9: 99,415,185 (GRCm39) E165G probably damaging Het
Atp6v1c1 T C 15: 38,691,949 (GRCm39) *383Q probably null Het
Atp8b4 A T 2: 126,217,614 (GRCm39) L634Q possibly damaging Het
B3glct A G 5: 149,649,069 (GRCm39) probably null Het
Bhlhe40 TG TGG 6: 108,641,818 (GRCm39) 254 probably null Het
Bicd2 A G 13: 49,531,706 (GRCm39) D316G possibly damaging Het
Bop1 A T 15: 76,338,041 (GRCm39) S610T probably damaging Het
Car11 T A 7: 45,350,745 (GRCm39) Y80* probably null Het
Ccdc121rt2 A T 5: 112,598,035 (GRCm39) E194V possibly damaging Het
Ccdc96 T C 5: 36,642,609 (GRCm39) I205T probably benign Het
Ces2a A G 8: 105,466,273 (GRCm39) E390G probably benign Het
Cfap54 C A 10: 92,720,565 (GRCm39) V2630L unknown Het
Chek2 G T 5: 111,019,974 (GRCm39) probably null Het
Cntn3 C T 6: 102,314,355 (GRCm39) probably null Het
Cpne3 A T 4: 19,528,239 (GRCm39) D339E probably damaging Het
Crocc2 C T 1: 93,143,829 (GRCm39) Q1403* probably null Het
Crppa A T 12: 36,551,994 (GRCm39) I283F possibly damaging Het
Csnka2ip G A 16: 64,299,803 (GRCm39) T187I Het
Ctu1 A G 7: 43,326,019 (GRCm39) H226R possibly damaging Het
Cubn G T 2: 13,291,875 (GRCm39) Q3317K probably damaging Het
Cyp17a1 A G 19: 46,659,134 (GRCm39) L169P probably benign Het
Dcc T A 18: 71,507,640 (GRCm39) K911* probably null Het
Dcun1d2 G A 8: 13,328,675 (GRCm39) R75* probably null Het
Defb19 A T 2: 152,421,943 (GRCm39) probably null Het
Dffb A T 4: 154,053,570 (GRCm39) S257R probably damaging Het
Dip2c A C 13: 9,664,413 (GRCm39) N942T probably damaging Het
Dnah3 T A 7: 119,565,474 (GRCm39) I169F Het
Dnah3 T C 7: 119,660,183 (GRCm39) M830V probably benign Het
Dnajc5g G A 5: 31,269,009 (GRCm39) S130N possibly damaging Het
Dscaml1 C A 9: 45,613,703 (GRCm39) Q939K possibly damaging Het
Evpl G C 11: 116,117,905 (GRCm39) N761K possibly damaging Het
Fbxw8 A T 5: 118,206,280 (GRCm39) I556N probably damaging Het
Fry G T 5: 150,304,348 (GRCm39) M579I possibly damaging Het
Ggt7 A T 2: 155,337,800 (GRCm39) M488K probably benign Het
Gnpnat1 T A 14: 45,619,038 (GRCm39) H107L probably benign Het
Golga2 C A 2: 32,195,599 (GRCm39) P798Q possibly damaging Het
Gpr35 G A 1: 92,910,929 (GRCm39) A214T probably damaging Het
Greb1 A T 12: 16,759,431 (GRCm39) probably null Het
Hkdc1 G A 10: 62,221,478 (GRCm39) T860I probably damaging Het
Icam5 C A 9: 20,946,738 (GRCm39) P422Q possibly damaging Het
Ist1 A C 8: 110,404,159 (GRCm39) S238A probably benign Het
Lrig2 T C 3: 104,404,836 (GRCm39) N91D probably benign Het
Mapt A C 11: 104,218,949 (GRCm39) D352A probably damaging Het
Micall2 G A 5: 139,702,124 (GRCm39) P373L possibly damaging Het
Mocs1 A G 17: 49,761,585 (GRCm39) S560G possibly damaging Het
Mpo A G 11: 87,691,950 (GRCm39) D461G probably damaging Het
Myo1a G T 10: 127,546,309 (GRCm39) V271L probably damaging Het
Ncoa1 G A 12: 4,345,188 (GRCm39) P720S not run Het
Ncr1 T A 7: 4,341,150 (GRCm39) I47N probably damaging Het
Ndufb6 G A 4: 40,277,730 (GRCm39) R66C probably damaging Het
Obox5 A T 7: 15,492,668 (GRCm39) S208C probably damaging Het
Or10q1 T C 19: 13,726,502 (GRCm39) S11P probably damaging Het
Or2n1d A T 17: 38,646,755 (GRCm39) K236* probably null Het
Or5p75-ps1 T A 7: 108,107,611 (GRCm39) F116Y unknown Het
Or7d9 T A 9: 20,197,826 (GRCm39) M285K probably damaging Het
Padi4 A C 4: 140,488,983 (GRCm39) V152G probably damaging Het
Pdzd7 A T 19: 45,025,450 (GRCm39) D348E probably damaging Het
Pdzph1 T A 17: 59,186,154 (GRCm39) K1212N possibly damaging Het
Piezo2 C T 18: 63,160,634 (GRCm39) G2341R probably damaging Het
Plb1 A G 5: 32,511,028 (GRCm39) K1298E probably benign Het
Prr14l A G 5: 32,985,982 (GRCm39) L1171P probably benign Het
Rab11fip5 T C 6: 85,318,850 (GRCm39) T680A probably benign Het
Rev1 A T 1: 38,127,146 (GRCm39) N371K possibly damaging Het
Rsf1 CGGCGGCGG CGGCGGCGGGGGCGGCGG 7: 97,229,133 (GRCm39) probably benign Het
Ryr2 A G 13: 11,799,997 (GRCm39) C917R probably damaging Het
Sall1 A T 8: 89,757,549 (GRCm39) S852T possibly damaging Het
Serpine2 A G 1: 79,779,272 (GRCm39) F296L probably damaging Het
Slc12a6 A T 2: 112,182,887 (GRCm39) N754I probably damaging Het
Slc39a6 A T 18: 24,718,332 (GRCm39) L575Q probably damaging Het
Smarcc2 T A 10: 128,321,475 (GRCm39) L890Q probably damaging Het
Smg5 T A 3: 88,268,378 (GRCm39) V1006D probably damaging Het
Ssh2 T C 11: 77,283,899 (GRCm39) V51A probably damaging Het
St14 T C 9: 31,008,195 (GRCm39) K547E probably benign Het
Stag1 T G 9: 100,678,781 (GRCm39) V234G probably damaging Het
Stag3 A T 5: 138,280,207 (GRCm39) Q24L probably benign Het
Stra6 T C 9: 58,048,380 (GRCm39) Y158H probably damaging Het
Tcstv1a A T 13: 120,355,666 (GRCm39) probably null Het
Tmem196 G A 12: 119,975,002 (GRCm39) C62Y probably damaging Het
Tmem265 T A 7: 127,164,039 (GRCm39) F84L Het
Tph1 C T 7: 46,306,627 (GRCm39) probably null Het
Ttn A G 2: 76,776,834 (GRCm39) I1522T unknown Het
Ulk4 T A 9: 121,084,178 (GRCm39) Q129L probably benign Het
Usp17la T A 7: 104,510,792 (GRCm39) S466T probably benign Het
Vmn2r31 A T 7: 7,387,744 (GRCm39) V609E probably damaging Het
Vmn2r52 C T 7: 9,904,744 (GRCm39) C365Y probably benign Het
Zbtb4 A T 11: 69,666,937 (GRCm39) T81S possibly damaging Het
Zfp605 A T 5: 110,259,885 (GRCm39) probably benign Het
Other mutations in Hdac10
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00229:Hdac10 APN 15 89,012,645 (GRCm39) missense probably damaging 1.00
IGL01063:Hdac10 APN 15 89,008,071 (GRCm39) missense possibly damaging 0.68
IGL01577:Hdac10 APN 15 89,010,416 (GRCm39) missense possibly damaging 0.90
IGL01690:Hdac10 APN 15 89,010,194 (GRCm39) missense probably benign 0.00
IGL01724:Hdac10 APN 15 89,008,912 (GRCm39) unclassified probably benign
IGL01866:Hdac10 APN 15 89,008,736 (GRCm39) missense probably damaging 1.00
IGL01989:Hdac10 APN 15 89,009,546 (GRCm39) missense probably damaging 1.00
IGL01995:Hdac10 APN 15 89,011,801 (GRCm39) missense probably damaging 1.00
IGL02256:Hdac10 APN 15 89,010,097 (GRCm39) unclassified probably benign
IGL02668:Hdac10 APN 15 89,009,847 (GRCm39) missense probably benign 0.10
R0240:Hdac10 UTSW 15 89,010,085 (GRCm39) missense possibly damaging 0.65
R0240:Hdac10 UTSW 15 89,010,085 (GRCm39) missense possibly damaging 0.65
R0454:Hdac10 UTSW 15 89,009,961 (GRCm39) splice site probably null
R0723:Hdac10 UTSW 15 89,010,621 (GRCm39) missense probably damaging 1.00
R0924:Hdac10 UTSW 15 89,010,065 (GRCm39) missense probably benign
R1553:Hdac10 UTSW 15 89,009,718 (GRCm39) missense possibly damaging 0.51
R1608:Hdac10 UTSW 15 89,009,521 (GRCm39) missense probably benign 0.04
R1619:Hdac10 UTSW 15 89,010,878 (GRCm39) missense probably damaging 1.00
R1715:Hdac10 UTSW 15 89,010,912 (GRCm39) splice site probably null
R2284:Hdac10 UTSW 15 89,011,607 (GRCm39) missense probably benign 0.00
R2872:Hdac10 UTSW 15 89,010,059 (GRCm39) missense possibly damaging 0.46
R2872:Hdac10 UTSW 15 89,010,059 (GRCm39) missense possibly damaging 0.46
R3688:Hdac10 UTSW 15 89,007,767 (GRCm39) critical splice donor site probably null
R4283:Hdac10 UTSW 15 89,009,826 (GRCm39) missense possibly damaging 0.94
R4604:Hdac10 UTSW 15 89,009,600 (GRCm39) critical splice acceptor site probably null
R4654:Hdac10 UTSW 15 89,011,036 (GRCm39) unclassified probably benign
R4898:Hdac10 UTSW 15 89,012,650 (GRCm39) start codon destroyed probably null 1.00
R4998:Hdac10 UTSW 15 89,008,143 (GRCm39) missense possibly damaging 0.94
R5393:Hdac10 UTSW 15 89,010,887 (GRCm39) missense probably damaging 1.00
R5769:Hdac10 UTSW 15 89,007,819 (GRCm39) missense probably benign 0.00
R5785:Hdac10 UTSW 15 89,011,148 (GRCm39) missense probably benign
R6992:Hdac10 UTSW 15 89,009,534 (GRCm39) missense probably benign 0.01
R7149:Hdac10 UTSW 15 89,011,652 (GRCm39) missense probably damaging 1.00
R7237:Hdac10 UTSW 15 89,009,580 (GRCm39) missense probably benign
R7276:Hdac10 UTSW 15 89,012,488 (GRCm39) missense probably benign 0.01
R9294:Hdac10 UTSW 15 89,010,480 (GRCm39) missense probably damaging 1.00
R9684:Hdac10 UTSW 15 89,011,402 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGGAGCAGAGATTCCTGGTG -3'
(R):5'- TGACCACGGTGTAGCTATGG -3'

Sequencing Primer
(F):5'- GGAGTGCCCACCCAGTAATC -3'
(R):5'- TAGCTATGGGCACAGCACTTG -3'
Posted On 2019-09-13