Mutagenetix > Incidental Mutation

Incidental Mutation 'R7402:Atrn'

574240

Institutional Source

Beutler Lab

Gene Symbol

Atrn

Ensembl Gene

ENSMUSG00000027312

Gene Name

attractin

Synonyms

Mgca

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7402 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

130906495-131030333 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 130947600 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Arginine at position 328 (W328R)

Ref Sequence

ENSEMBL: ENSMUSP00000028781 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028781]

AlphaFold

Q9WU60

Predicted Effect

probably damaging
Transcript: ENSMUST00000028781
AA Change: W328R

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000028781
Gene: ENSMUSG00000027312
AA Change: W328R

Domain	Start	End	E-Value	Type
low complexity region	2	9	N/A	INTRINSIC
low complexity region	51	97	N/A	INTRINSIC
EGF	99	129	9.85e-5	SMART
CUB	131	247	7.85e-18	SMART
EGF	248	282	1.47e1	SMART
Pfam:Kelch_1	339	382	1.1e-7	PFAM
Pfam:Kelch_5	389	434	2.5e-7	PFAM
Pfam:Kelch_6	390	439	3.3e-8	PFAM
Pfam:Kelch_1	553	606	8.4e-8	PFAM
PSI	646	693	7.41e-7	SMART
PSI	702	747	8.64e-8	SMART
PSI	754	799	2.11e-2	SMART
CLECT	787	918	6.14e-20	SMART
PSI	931	982	1.11e-5	SMART
PSI	985	1060	1.2e-6	SMART
EGF_Lam	1062	1105	1.97e-4	SMART
EGF_like	1108	1154	3.9e0	SMART
transmembrane domain	1278	1300	N/A	INTRINSIC
low complexity region	1310	1322	N/A	INTRINSIC
low complexity region	1373	1385	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

MGI Phenotype

FUNCTION: This gene encodes a widely expressed transmembrane glycoprotein that plays important roles in diverse physiological processes such as regulation of hair pigmentation, monocyte-T cell interaction and control of energy homeostasis. The encoded preproprotein undergoes proteolytic processing to generate a mature, functional protein. Certain mutations in this gene are responsible for the mahogany mouse phenotype of dark brown or black coat on a normally agouti background. Mice with loss-of-function mutations in this gene exhibit black coat color, tremor, adiposity, higher basal metabolic rate, juvenile-onset hypomyelination and age-dependent spongiform neurodegeneration of the central nervous system. [provided by RefSeq, Jul 2016]
PHENOTYPE: Some mutant homozygotes exhibit decreases in phaeomelanin synthesis, body weight, and adiposity; increases in locomotion, and abnormal myelination and vacuolation of the central nervous system resulting in tremors. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 98 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc4	G	T	14: 118,706,075	P12Q	probably damaging	Het
Acsf3	A	G	8: 122,780,424	Y152C	probably damaging	Het
Adam22	T	A	5: 8,095,049	Q803L	possibly damaging	Het
Adamtsl3	G	A	7: 82,578,617	V1337I	probably damaging	Het
Adra1b	T	C	11: 43,776,018	D464G	possibly damaging	Het
Alpk3	T	A	7: 81,076,912	I115K	probably benign	Het
Amdhd2	A	G	17: 24,161,683	S96P		Het
Ankib1	T	G	5: 3,769,586	D111A	probably benign	Het
Arhgef2	A	G	3: 88,633,566	D216G	probably damaging	Het
Astn1	A	T	1: 158,552,855		probably benign	Het
Atxn7	A	T	14: 14,095,427	H375L	probably damaging	Het
BC003331	A	G	1: 150,386,356		probably null	Het
Btaf1	A	T	19: 37,003,515	N1579Y	probably damaging	Het
Cacna1b	A	T	2: 24,607,659	L2079Q	probably benign	Het
Ccdc102a	T	C	8: 94,903,353	K520R	probably damaging	Het
Cd2ap	T	C	17: 42,805,163	H602R	possibly damaging	Het
Cdkn2aip	A	G	8: 47,711,373	V435A	possibly damaging	Het
Cenpf	A	T	1: 189,659,378	Y735*	probably null	Het
Cep350	T	A	1: 155,928,215	I1041L	probably benign	Het
Ckap4	A	G	10: 84,527,999	V400A	probably damaging	Het
Comp	T	A	8: 70,377,204	D359E	probably benign	Het
Coq10b	A	C	1: 55,061,341	K61N	probably benign	Het
Csmd2	A	C	4: 128,322,095	S548R		Het
Csmd2	G	A	4: 128,322,096	S548N		Het
Ctif	A	G	18: 75,611,736	I99T	probably benign	Het
Ctns	T	G	11: 73,193,077	T40P	possibly damaging	Het
Cyp11b1	C	T	15: 74,840,825	R129H	probably damaging	Het
Cyp2c68	A	T	19: 39,740,874	N56K	probably benign	Het
D6Wsu163e	A	G	6: 126,962,005	K401R	probably damaging	Het
Dstn	T	A	2: 143,938,448	C23S	probably benign	Het
Fam214a	C	A	9: 75,006,386	Y107*	probably null	Het
Fam72a	A	T	1: 131,538,875	E132D	probably damaging	Het
Fam72a	G	T	1: 131,538,876	E133*	probably null	Het
Gbp8	T	A	5: 105,031,295	I113F	probably damaging	Het
Gm3095	A	T	14: 3,964,463	R60S	possibly damaging	Het
Gpa33	A	T	1: 166,152,694	M109L	probably damaging	Het
Grik2	A	G	10: 49,535,397	L215P	probably damaging	Het
Gucy2g	A	C	19: 55,206,293	F897L	probably damaging	Het
Hinfp	A	G	9: 44,298,017	L295P	probably damaging	Het
Ift122	T	C	6: 115,894,322	V526A	probably benign	Het
Ighv5-12	T	C	12: 113,702,233	T82A	probably benign	Het
Il18rap	T	A	1: 40,524,951	S76R	probably benign	Het
Itga6	A	T	2: 71,853,553	N1045I	probably benign	Het
Kctd21	A	T	7: 97,347,763	I148F	possibly damaging	Het
Kif28	T	A	1: 179,740,079	H42L	probably benign	Het
Kmt2c	A	C	5: 25,395,420	C326W	probably damaging	Het
Knl1	T	A	2: 119,095,226	L1912*	probably null	Het
Lrfn1	A	T	7: 28,459,522	I289F	probably damaging	Het
Lrriq1	T	C	10: 103,221,324	K205R	possibly damaging	Het
Mbd5	A	T	2: 49,257,554	N592I	probably damaging	Het
Mbl2	A	G	19: 30,239,402	N205D	possibly damaging	Het
Mcm4	C	A	16: 15,637,178	M1I	probably null	Het
Mgat4a	T	A	1: 37,454,784	H327L	probably damaging	Het
Miox	A	G	15: 89,335,003	D16G	probably benign	Het
Mvk	C	A	5: 114,455,978	P298Q	possibly damaging	Het
Nol6	A	G	4: 41,118,699	L726P	probably damaging	Het
Nos1	T	C	5: 117,949,815	I1381T	probably benign	Het
Nup98	A	T	7: 102,134,937	S1063T	probably benign	Het
Obscn	T	G	11: 58,995,449	M7862L	unknown	Het
Obsl1	T	C	1: 75,487,704	T1653A	probably benign	Het
Olfr1044	A	G	2: 86,171,202	I205T	probably benign	Het
Olfr1202	G	T	2: 88,817,343	M57I	probably damaging	Het
Olfr1497	C	T	19: 13,794,994	V206I	probably damaging	Het
Olfr968	T	A	9: 39,771,964	T279S	probably benign	Het
Pcdhb20	A	G	18: 37,504,952	Y177C	probably benign	Het
Pcdhb3	A	C	18: 37,301,604	I208L	probably benign	Het
Phlpp1	G	T	1: 106,389,690	G1214W	probably damaging	Het
Ppp4r3a	A	T	12: 101,058,794	S149T	possibly damaging	Het
Pxdn	T	C	12: 30,002,439	C872R	probably damaging	Het
Rarb	A	G	14: 16,548,419	C101R	probably damaging	Het
Rcor3	A	C	1: 192,127,983	V114G	probably benign	Het
Rnpepl1	A	G	1: 92,919,650	Q653R	probably benign	Het
Rpap2	T	A	5: 107,620,458	Y387*	probably null	Het
Rttn	C	T	18: 88,985,911	T343M	possibly damaging	Het
Samd11	T	C	4: 156,248,773	T333A	probably benign	Het
Six5	T	C	7: 19,095,043	L136P	probably damaging	Het
Slc12a5	T	A	2: 164,982,932	M419K	probably benign	Het
Slc22a21	T	C	11: 53,960,400	M179V	probably benign	Het
Slc35a4	A	G	18: 36,680,517	D6G	unknown	Het
Spdye4c	A	T	2: 128,592,341	M1L	probably benign	Het
Svep1	A	T	4: 58,069,699	C2696S	possibly damaging	Het
Tceanc2	T	C	4: 107,147,696	N85S	probably benign	Het
Teddm2	A	T	1: 153,850,597	L124Q	probably damaging	Het
Teddm2	G	C	1: 153,850,598	L124V	probably benign	Het
Tgfbr1	T	A	4: 47,405,623	W409R	probably damaging	Het
Tkt	A	G	14: 30,558,798	D62G	probably damaging	Het
Tnrc6b	T	A	15: 80,884,300	V1054D	probably damaging	Het
Trpm7	C	A	2: 126,799,206	L1564F	probably damaging	Het
Vmn1r43	A	T	6: 89,869,821	C228S	probably benign	Het
Vmn2r106	T	C	17: 20,267,621	R839G	probably damaging	Het
Vmn2r5	G	A	3: 64,495,755	T523I	probably benign	Het
Vwa3b	C	T	1: 37,114,597	Q507*	probably null	Het
Wrn	C	G	8: 33,248,966	W1278S	probably benign	Het
Zfp281	T	G	1: 136,625,452	L56R	probably damaging	Het
Zfp407	G	A	18: 84,561,536	T484I	probably benign	Het
Zfp451	T	C	1: 33,813,762	T24A	probably benign	Het
Zfp607b	T	A	7: 27,693,494	F16I	probably damaging	Het
Zfp638	T	A	6: 83,928,688	V41E	possibly damaging	Het

Other mutations in Atrn

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00337:Atrn	APN	2	130958079	missense	probably damaging	1.00
IGL00571:Atrn	APN	2	130995048	missense	probably damaging	1.00
IGL01092:Atrn	APN	2	130947636	nonsense	probably null
IGL01572:Atrn	APN	2	131002795	missense	probably damaging	1.00
IGL01924:Atrn	APN	2	130935565	missense	probably damaging	1.00
IGL02116:Atrn	APN	2	130958089	missense	probably damaging	1.00
IGL02372:Atrn	APN	2	131002754	splice site	probably benign
IGL02390:Atrn	APN	2	131020977	missense	possibly damaging	0.82
IGL02548:Atrn	APN	2	130972282	missense	probably damaging	1.00
IGL02749:Atrn	APN	2	130970144	nonsense	probably null
IGL02749:Atrn	APN	2	130947734	splice site	probably benign
BB010:Atrn	UTSW	2	130995066	missense	probably damaging	1.00
BB020:Atrn	UTSW	2	130995066	missense	probably damaging	1.00
R0026:Atrn	UTSW	2	130957920	missense	probably damaging	1.00
R0403:Atrn	UTSW	2	130906859	missense	probably damaging	1.00
R0479:Atrn	UTSW	2	130999165	nonsense	probably null
R0544:Atrn	UTSW	2	130986826	missense	probably damaging	1.00
R0570:Atrn	UTSW	2	130980134	missense	probably benign	0.01
R0606:Atrn	UTSW	2	130906856	missense	possibly damaging	0.90
R0617:Atrn	UTSW	2	130995085	critical splice donor site	probably null
R0658:Atrn	UTSW	2	130970227	critical splice donor site	probably null
R1108:Atrn	UTSW	2	130957914	missense	probably damaging	1.00
R1112:Atrn	UTSW	2	130999161	missense	probably benign	0.04
R1219:Atrn	UTSW	2	131021007	missense	possibly damaging	0.90
R1422:Atrn	UTSW	2	130957914	missense	probably damaging	1.00
R1524:Atrn	UTSW	2	130957080	missense	probably benign	0.15
R1653:Atrn	UTSW	2	130935624	missense	probably benign
R1795:Atrn	UTSW	2	130972288	missense	probably benign
R1807:Atrn	UTSW	2	130982772	missense	possibly damaging	0.94
R1920:Atrn	UTSW	2	130995051	missense	probably damaging	1.00
R1921:Atrn	UTSW	2	130995051	missense	probably damaging	1.00
R1935:Atrn	UTSW	2	130958035	missense	probably damaging	1.00
R1982:Atrn	UTSW	2	130970222	missense	probably benign
R2000:Atrn	UTSW	2	130935588	missense	probably damaging	1.00
R2143:Atrn	UTSW	2	130957996	missense	probably benign	0.03
R2336:Atrn	UTSW	2	130957954	missense	probably damaging	1.00
R2679:Atrn	UTSW	2	130961675	critical splice donor site	probably null
R3426:Atrn	UTSW	2	131020956	missense	probably benign	0.06
R3909:Atrn	UTSW	2	130994207	missense	probably damaging	1.00
R4077:Atrn	UTSW	2	130964930	critical splice donor site	probably null
R4162:Atrn	UTSW	2	130994228	splice site	probably benign
R4195:Atrn	UTSW	2	130933412	missense	probably damaging	1.00
R4364:Atrn	UTSW	2	130970208	missense	probably benign	0.39
R4465:Atrn	UTSW	2	130960468	missense	probably benign	0.08
R4510:Atrn	UTSW	2	130935577	nonsense	probably null
R4511:Atrn	UTSW	2	130935577	nonsense	probably null
R4527:Atrn	UTSW	2	130973504	missense	probably benign	0.10
R4586:Atrn	UTSW	2	130982042	missense	probably damaging	1.00
R4592:Atrn	UTSW	2	130999130	intron	probably benign
R4658:Atrn	UTSW	2	130933429	missense	probably damaging	1.00
R4735:Atrn	UTSW	2	131020990	missense	probably benign	0.06
R4960:Atrn	UTSW	2	130995047	nonsense	probably null
R4999:Atrn	UTSW	2	130975954	missense	probably damaging	1.00
R5066:Atrn	UTSW	2	130994193	missense	possibly damaging	0.60
R5080:Atrn	UTSW	2	130970124	missense	possibly damaging	0.95
R5141:Atrn	UTSW	2	130999130	intron	probably benign
R5256:Atrn	UTSW	2	130946019	missense	probably benign	0.39
R5494:Atrn	UTSW	2	131023075	missense	probably damaging	1.00
R5678:Atrn	UTSW	2	130970016	missense	probably damaging	0.96
R5752:Atrn	UTSW	2	130906544	unclassified	probably benign
R5931:Atrn	UTSW	2	130933436	missense	possibly damaging	0.56
R6023:Atrn	UTSW	2	131020980	missense	probably benign	0.25
R6176:Atrn	UTSW	2	130946091	missense	probably benign	0.31
R6377:Atrn	UTSW	2	130979969	missense	probably damaging	1.00
R6433:Atrn	UTSW	2	131023027	missense	probably damaging	1.00
R7226:Atrn	UTSW	2	130986744	missense	probably damaging	0.99
R7541:Atrn	UTSW	2	130961571	missense	possibly damaging	0.46
R7587:Atrn	UTSW	2	130980114	missense	probably damaging	1.00
R7872:Atrn	UTSW	2	130970227	critical splice donor site	probably null
R7910:Atrn	UTSW	2	130964887	missense	probably benign	0.04
R7913:Atrn	UTSW	2	130970211	missense	probably damaging	1.00
R7933:Atrn	UTSW	2	130995066	missense	probably damaging	1.00
R8044:Atrn	UTSW	2	130935529	missense	probably damaging	1.00
R8079:Atrn	UTSW	2	131013641	missense	probably null	1.00
R8093:Atrn	UTSW	2	130975988	missense	probably benign	0.00
R8203:Atrn	UTSW	2	130960549	missense	probably benign	0.00
R8234:Atrn	UTSW	2	131023000	critical splice acceptor site	probably null
R8462:Atrn	UTSW	2	130935584	missense	probably damaging	1.00
R8816:Atrn	UTSW	2	130906878	missense	probably damaging	1.00
R8816:Atrn	UTSW	2	131004574	missense	probably damaging	1.00
R8831:Atrn	UTSW	2	130906601	missense	probably benign	0.22
R8937:Atrn	UTSW	2	130999237	missense	probably benign	0.00
R9161:Atrn	UTSW	2	130935550	missense	probably damaging	1.00
R9722:Atrn	UTSW	2	130961616	missense	probably damaging	1.00
R9786:Atrn	UTSW	2	130944889	missense	probably damaging	1.00
RF009:Atrn	UTSW	2	130906922	missense	probably benign	0.12
X0024:Atrn	UTSW	2	130958139	missense	probably damaging	1.00
Z1088:Atrn	UTSW	2	130973399	missense	probably benign
Z1176:Atrn	UTSW	2	130946193	missense	probably benign	0.27
Z1177:Atrn	UTSW	2	130946042	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- CGCTTAAGTGCTAAAGGAAACAC -3'
(R):5'- CTTAAGCTTTGTACAGAAGCACTTACC -3'

Sequencing Primer
(F):5'- ACATATGGTTGTGAGCCACC -3'
(R):5'- CCACTCTCAGAGCTGGAAATGG -3'

Posted On

2019-09-13