Mutagenetix > Incidental Mutation

Incidental Mutation 'R7403:Swt1'

574314

Institutional Source

Beutler Lab

Gene Symbol

Swt1

Ensembl Gene

ENSMUSG00000052748

Gene Name

SWT1 RNA endoribonuclease homolog (S. cerevisiae)

Synonyms

1200016B10Rik

MMRRC Submission

045485-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.180) question?

Stock #

R7403 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

151243450-151304206 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 151264444 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 690 (T690I)

Ref Sequence

ENSEMBL: ENSMUSP00000067516 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000064771] [ENSMUST00000111883]

AlphaFold

Q9DBQ9

Predicted Effect

probably benign
Transcript: ENSMUST00000064771
AA Change: T690I

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000067516
Gene: ENSMUSG00000052748
AA Change: T690I

Domain	Start	End	E-Value	Type
low complexity region	186	206	N/A	INTRINSIC
low complexity region	231	242	N/A	INTRINSIC
low complexity region	258	269	N/A	INTRINSIC
PINc	395	522	1.94e-9	SMART
low complexity region	783	793	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111883

SMART Domains

Protein: ENSMUSP00000107514
Gene: ENSMUSG00000052748

Domain	Start	End	E-Value	Type
low complexity region	186	206	N/A	INTRINSIC
low complexity region	231	242	N/A	INTRINSIC
low complexity region	258	269	N/A	INTRINSIC
PINc	395	522	1.94e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000141977

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Appl2	G	A	10: 83,450,059 (GRCm39)	A271V	probably benign	Het
Brpf3	C	T	17: 29,040,330 (GRCm39)	T917I	probably benign	Het
Camta1	G	A	4: 151,537,752 (GRCm39)	Q143*	probably null	Het
Cd3e	C	A	9: 44,913,590 (GRCm39)	E48D	probably benign	Het
Clca3b	A	G	3: 144,529,259 (GRCm39)	L805P	probably benign	Het
Crispld1	A	G	1: 17,817,820 (GRCm39)	Y241C	probably damaging	Het
Ddx43	T	G	9: 78,321,133 (GRCm39)	N380K	probably damaging	Het
Dtl	A	T	1: 191,295,285 (GRCm39)	V155E	probably damaging	Het
Eif1ad19	G	T	12: 87,740,314 (GRCm39)	Q82K	probably benign	Het
Elp1	A	T	4: 56,778,994 (GRCm39)	C608S	probably damaging	Het
Elp2	A	G	18: 24,752,542 (GRCm39)	H365R	probably damaging	Het
Fam78a	T	C	2: 31,959,627 (GRCm39)	N161S	probably damaging	Het
Far2	T	C	6: 148,060,475 (GRCm39)	I276T	possibly damaging	Het
Frem3	T	C	8: 81,342,774 (GRCm39)	L1689P	probably damaging	Het
Gak	T	C	5: 108,761,401 (GRCm39)	K210R	probably benign	Het
Gna14	G	T	19: 16,576,445 (GRCm39)	D151Y		Het
Hdhd2	A	G	18: 77,042,736 (GRCm39)	D55G	probably benign	Het
Hycc2	A	T	1: 58,587,861 (GRCm39)	D117E	possibly damaging	Het
Ifna5	A	G	4: 88,754,110 (GRCm39)	N117D	probably benign	Het
Il16	T	A	7: 83,319,343 (GRCm39)	T383S	probably damaging	Het
Il36rn	T	C	2: 24,171,214 (GRCm39)	F101L	probably damaging	Het
Ino80d	A	G	1: 63,101,378 (GRCm39)	V416A	possibly damaging	Het
Ints6	T	C	14: 62,945,104 (GRCm39)	R409G	possibly damaging	Het
Itgb5	G	T	16: 33,723,163 (GRCm39)		probably null	Het
Itprid1	T	A	6: 55,953,399 (GRCm39)	L905*	probably null	Het
Kcnq3	T	A	15: 65,874,066 (GRCm39)	R561W	probably damaging	Het
Lipo4	C	T	19: 33,480,679 (GRCm39)	E230K	possibly damaging	Het
Lrrc7	A	T	3: 157,854,311 (GRCm39)	L1299*	probably null	Het
Mcm3ap	T	C	10: 76,318,657 (GRCm39)		probably null	Het
Mok	A	T	12: 110,781,563 (GRCm39)		probably null	Het
Mylk2	T	A	2: 152,759,261 (GRCm39)	V344E	probably damaging	Het
Oacyl	T	C	18: 65,870,966 (GRCm39)	V389A	probably benign	Het
Oplah	T	C	15: 76,189,209 (GRCm39)	D278G	probably benign	Het
Or1j8	T	C	2: 36,192,342 (GRCm39)	F264L	probably benign	Het
Or8s5	T	C	15: 98,238,000 (GRCm39)	Y290C	probably damaging	Het
Padi3	T	C	4: 140,527,430 (GRCm39)	N124D	probably benign	Het
Parp3	T	C	9: 106,352,052 (GRCm39)	S107G	probably benign	Het
Pcdhb18	G	A	18: 37,624,950 (GRCm39)	G760D	probably benign	Het
Plekhh1	G	A	12: 79,087,351 (GRCm39)	W13*	probably null	Het
Poglut3	T	A	9: 53,301,741 (GRCm39)	V131E	probably damaging	Het
Pou2f1	C	T	1: 165,738,955 (GRCm39)	A166T	unknown	Het
Ppp1r10	C	T	17: 36,240,326 (GRCm39)	P539S	probably benign	Het
Prdm11	T	C	2: 92,817,036 (GRCm39)	T310A	probably benign	Het
Rbm25	A	G	12: 83,722,908 (GRCm39)	Y777C	probably damaging	Het
Relt	A	T	7: 100,500,655 (GRCm39)	C72S	probably damaging	Het
Rhag	T	A	17: 41,145,549 (GRCm39)	I334N	probably damaging	Het
Rhbdf2	A	C	11: 116,491,245 (GRCm39)	L630R	probably damaging	Het
Rnps1	T	C	17: 24,644,061 (GRCm39)	S274P	unknown	Het
Rtkn2	A	G	10: 67,841,466 (GRCm39)	I205V	probably benign	Het
Ryr1	A	T	7: 28,713,292 (GRCm39)	V4690E	probably benign	Het
Secisbp2l	T	C	2: 125,602,199 (GRCm39)	Y387C	possibly damaging	Het
Sema3d	A	T	5: 12,547,551 (GRCm39)	I158F	probably damaging	Het
Slc17a1	A	G	13: 24,058,690 (GRCm39)	N48S	probably benign	Het
Slc2a1	G	A	4: 118,989,752 (GRCm39)	G130S	probably damaging	Het
Slc6a3	T	C	13: 73,710,546 (GRCm39)		probably null	Het
Snx27	A	T	3: 94,436,233 (GRCm39)	S261T	probably damaging	Het
Spag17	A	T	3: 99,846,691 (GRCm39)	I72F	possibly damaging	Het
Spink6	T	G	18: 44,204,564 (GRCm39)	L10R	unknown	Het
Syne2	G	A	12: 75,962,020 (GRCm39)	E729K	not run	Het
Synj2	C	T	17: 6,088,005 (GRCm39)	T1352M	possibly damaging	Het
Taar4	G	A	10: 23,836,957 (GRCm39)	G189D	probably damaging	Het
Thsd4	T	C	9: 59,964,170 (GRCm39)	N441D	probably damaging	Het
Tm9sf2	A	G	14: 122,378,640 (GRCm39)	D248G	probably benign	Het
Tmem69	A	T	4: 116,410,664 (GRCm39)	L102Q	probably damaging	Het
Tshr	A	G	12: 91,464,548 (GRCm39)	Y98C	probably damaging	Het
Tspan1	A	G	4: 116,020,219 (GRCm39)	V230A	probably benign	Het
Upk3a	T	C	15: 84,903,709 (GRCm39)	V136A	possibly damaging	Het
Ush2a	T	A	1: 188,365,924 (GRCm39)	N2259K	probably damaging	Het
Usp24	A	G	4: 106,264,232 (GRCm39)	D1721G	possibly damaging	Het
Vldlr	T	A	19: 27,213,674 (GRCm39)	C120*	probably null	Het
Vmn2r23	A	T	6: 123,681,538 (GRCm39)	I149L	probably benign	Het
Vps8	A	T	16: 21,253,722 (GRCm39)	E21V	possibly damaging	Het
Wdr35	A	G	12: 9,062,685 (GRCm39)	I635V	probably damaging	Het
Zfp955a	T	C	17: 33,462,720 (GRCm39)	D58G	probably benign	Het
Zkscan5	A	G	5: 145,155,403 (GRCm39)	Q358R	probably benign	Het

Other mutations in Swt1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01109:Swt1	APN	1	151,286,890 (GRCm39)	missense	probably damaging	0.99
IGL01622:Swt1	APN	1	151,286,760 (GRCm39)	missense	probably benign	0.01
IGL01623:Swt1	APN	1	151,286,760 (GRCm39)	missense	probably benign	0.01
IGL01672:Swt1	APN	1	151,270,359 (GRCm39)	critical splice donor site	probably null
IGL01693:Swt1	APN	1	151,297,855 (GRCm39)	missense	probably benign	0.02
IGL02203:Swt1	APN	1	151,246,377 (GRCm39)	missense	probably benign	0.01
IGL03223:Swt1	APN	1	151,255,170 (GRCm39)	missense	possibly damaging	0.80
R0124:Swt1	UTSW	1	151,267,280 (GRCm39)	missense	probably damaging	1.00
R0496:Swt1	UTSW	1	151,287,021 (GRCm39)	missense	probably benign
R1037:Swt1	UTSW	1	151,246,320 (GRCm39)	splice site	probably benign
R1171:Swt1	UTSW	1	151,281,272 (GRCm39)	missense	probably damaging	1.00
R1270:Swt1	UTSW	1	151,260,142 (GRCm39)	missense	probably benign	0.00
R1883:Swt1	UTSW	1	151,299,284 (GRCm39)	nonsense	probably null
R2051:Swt1	UTSW	1	151,248,081 (GRCm39)	missense	probably damaging	1.00
R2110:Swt1	UTSW	1	151,279,636 (GRCm39)	missense	probably damaging	0.97
R2185:Swt1	UTSW	1	151,260,219 (GRCm39)	missense	probably damaging	1.00
R3688:Swt1	UTSW	1	151,267,240 (GRCm39)	missense	probably damaging	0.99
R3785:Swt1	UTSW	1	151,255,155 (GRCm39)	missense	probably benign	0.03
R4074:Swt1	UTSW	1	151,270,520 (GRCm39)	missense	probably benign
R4157:Swt1	UTSW	1	151,278,795 (GRCm39)	missense	probably damaging	1.00
R4660:Swt1	UTSW	1	151,283,348 (GRCm39)	missense	probably benign	0.18
R4761:Swt1	UTSW	1	151,276,853 (GRCm39)	missense	probably benign	0.43
R4972:Swt1	UTSW	1	151,299,293 (GRCm39)	missense	probably benign	0.22
R5141:Swt1	UTSW	1	151,287,145 (GRCm39)	missense	probably benign	0.04
R5227:Swt1	UTSW	1	151,278,727 (GRCm39)	nonsense	probably null
R5400:Swt1	UTSW	1	151,288,585 (GRCm39)	missense	probably benign	0.00
R5580:Swt1	UTSW	1	151,260,206 (GRCm39)	missense	probably benign	0.00
R5912:Swt1	UTSW	1	151,287,160 (GRCm39)	missense	probably damaging	1.00
R5945:Swt1	UTSW	1	151,286,921 (GRCm39)	missense	probably benign	0.01
R5973:Swt1	UTSW	1	151,278,700 (GRCm39)	splice site	probably null
R5979:Swt1	UTSW	1	151,283,339 (GRCm39)	missense	possibly damaging	0.94
R6242:Swt1	UTSW	1	151,283,365 (GRCm39)	missense	probably benign	0.41
R6283:Swt1	UTSW	1	151,260,084 (GRCm39)	missense	possibly damaging	0.78
R6951:Swt1	UTSW	1	151,273,019 (GRCm39)	missense	possibly damaging	0.88
R7009:Swt1	UTSW	1	151,246,381 (GRCm39)	missense	possibly damaging	0.94
R7165:Swt1	UTSW	1	151,264,428 (GRCm39)	missense	probably damaging	1.00
R7214:Swt1	UTSW	1	151,270,364 (GRCm39)	missense	possibly damaging	0.63
R7439:Swt1	UTSW	1	151,286,815 (GRCm39)	missense	probably benign	0.04
R7441:Swt1	UTSW	1	151,286,815 (GRCm39)	missense	probably benign	0.04
R7571:Swt1	UTSW	1	151,270,470 (GRCm39)	missense	probably benign	0.00
R8028:Swt1	UTSW	1	151,260,248 (GRCm39)	missense	probably benign	0.26
R8225:Swt1	UTSW	1	151,297,859 (GRCm39)	missense	possibly damaging	0.96
R9075:Swt1	UTSW	1	151,246,245 (GRCm39)	intron	probably benign
R9100:Swt1	UTSW	1	151,299,256 (GRCm39)	critical splice donor site	probably null
R9135:Swt1	UTSW	1	151,244,239 (GRCm39)	missense	possibly damaging	0.61
R9291:Swt1	UTSW	1	151,286,694 (GRCm39)	missense	probably damaging	0.96
R9292:Swt1	UTSW	1	151,278,787 (GRCm39)	missense	probably benign	0.00
R9368:Swt1	UTSW	1	151,286,767 (GRCm39)	missense	possibly damaging	0.90
X0062:Swt1	UTSW	1	151,287,190 (GRCm39)	missense	probably benign	0.43
Z1176:Swt1	UTSW	1	151,264,436 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- AAGCCTTGCCTCTGTTTCAATG -3'
(R):5'- TGCTTTCTACACCAGAGAGACATAG -3'

Sequencing Primer
(F):5'- AATGTCCTTGGTATTTACTTAGTGCC -3'
(R):5'- TCTACACCAGAGAGACATAGTTTTG -3'

Posted On

2019-09-13