Incidental Mutation 'R7405:Ndst4'
ID 574491
Institutional Source Beutler Lab
Gene Symbol Ndst4
Ensembl Gene ENSMUSG00000027971
Gene Name N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
Synonyms 4930439H17Rik
MMRRC Submission 045376-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.072) question?
Stock # R7405 (G1)
Quality Score 225.009
Status Not validated
Chromosome 3
Chromosomal Location 125197725-125522548 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 125476865 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Serine at position 30 (N30S)
Ref Sequence ENSEMBL: ENSMUSP00000133575 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000173932] [ENSMUST00000174648]
AlphaFold Q9EQW8
Predicted Effect probably benign
Transcript: ENSMUST00000173932
AA Change: N538S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000133341
Gene: ENSMUSG00000027971
AA Change: N538S

DomainStartEndE-ValueType
Pfam:HSNSD 20 505 1.2e-251 PFAM
Pfam:Sulfotransfer_1 594 857 1.2e-43 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000174648
AA Change: N30S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000133575
Gene: ENSMUSG00000027971
AA Change: N30S

DomainStartEndE-ValueType
Pfam:Sulfotransfer_1 86 349 6.6e-44 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.4%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit a phenotype restricted to the colonic epithelium that includes an increased number of colon goblet cells, a decreased number of colonocytes, and increased apoptosis of colonic epithelial cells in the proximal colon. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 73 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700010I14Rik G T 17: 9,220,649 (GRCm39) V383L probably damaging Het
4930507D05Rik C A 10: 62,285,563 (GRCm39) H96N unknown Het
5730480H06Rik T C 5: 48,545,458 (GRCm39) I235T possibly damaging Het
Abcb11 A G 2: 69,117,963 (GRCm39) Y472H probably damaging Het
Adam39 A T 8: 41,277,659 (GRCm39) I17L probably benign Het
Aire T C 10: 77,870,447 (GRCm39) H458R probably benign Het
Ap3d1 T C 10: 80,577,734 (GRCm39) D31G probably benign Het
Atad2b T A 12: 4,993,232 (GRCm39) H250Q probably benign Het
Bnip5 G A 17: 29,124,298 (GRCm39) R335W probably damaging Het
Borcs5 C A 6: 134,662,945 (GRCm39) T74N probably benign Het
Btbd16 C T 7: 130,407,586 (GRCm39) T292I probably benign Het
Catsperd G A 17: 56,939,335 (GRCm39) V55M possibly damaging Het
Cfap107 T C 4: 144,146,323 (GRCm39) N110S probably damaging Het
Ctr9 T C 7: 110,642,921 (GRCm39) F462S possibly damaging Het
Cyp4f39 A G 17: 32,700,789 (GRCm39) S153G probably benign Het
Ddo T C 10: 40,523,993 (GRCm39) C328R possibly damaging Het
Ddr1 A G 17: 36,000,992 (GRCm39) V251A probably damaging Het
Dis3l A G 9: 64,221,986 (GRCm39) F475L probably damaging Het
Dkk4 G A 8: 23,115,859 (GRCm39) V99M probably benign Het
Dync1h1 C T 12: 110,600,654 (GRCm39) A1938V probably damaging Het
Ecel1 A T 1: 87,081,238 (GRCm39) probably null Het
Fbxo7 T A 10: 85,880,445 (GRCm39) Y377N probably damaging Het
Fbxw24 T C 9: 109,436,136 (GRCm39) I299V possibly damaging Het
Fkbp10 C T 11: 100,306,707 (GRCm39) A33V probably damaging Het
Gabra1 T C 11: 42,045,850 (GRCm39) T87A probably damaging Het
Gm21886 ACTCACTGAGGCCTGCAGACAGTAGGTGCTCACTGAGGCCTGCAGACAGTAGGTGCTCACTGAGGCCTGCAGACAGTAGGTGCTCACTGAGACCTGCAGACAGTAGGTGCTCACTGAGACCTGCAGACAGTAGGTGCTCACTGAGG ACTCACTGAGGCCTGCAGACAGTAGGTGCTCACTGAGGCCTGCAGACAGTAGGTGCTCACTGAGACCTGCAGACAGTAGGTGCTCACTGAGACCTGCAGACAGTAGGTGCTCACTGAGG 18: 80,133,040 (GRCm39) probably benign Het
Golga3 A T 5: 110,356,312 (GRCm39) I1000F probably damaging Het
Grid2ip T C 5: 143,366,199 (GRCm39) I563T probably benign Het
Gsx1 T C 5: 147,125,943 (GRCm39) S82P possibly damaging Het
Heg1 A G 16: 33,583,819 (GRCm39) K34E possibly damaging Het
Kank1 T A 19: 25,387,683 (GRCm39) L452* probably null Het
Lce1k A T 3: 92,714,181 (GRCm39) M1K probably null Het
Lcmt2 A G 2: 120,969,868 (GRCm39) I185T probably benign Het
Lrp1 T C 10: 127,417,620 (GRCm39) D1046G possibly damaging Het
Lrrc37 A T 11: 103,505,987 (GRCm39) Y1994N probably benign Het
Mast3 A T 8: 71,238,815 (GRCm39) D496E probably damaging Het
Mst1r C T 9: 107,792,321 (GRCm39) S925F possibly damaging Het
Mterf2 C T 10: 84,956,360 (GRCm39) G88D probably damaging Het
Mthfd1 T C 12: 76,358,648 (GRCm39) V783A probably damaging Het
Mybpc2 A T 7: 44,156,618 (GRCm39) W778R probably damaging Het
Nbea A G 3: 55,712,687 (GRCm39) L2130P possibly damaging Het
Nphs1 T C 7: 30,162,253 (GRCm39) V299A possibly damaging Het
Nup107 T C 10: 117,606,320 (GRCm39) D474G probably benign Het
Or10ag56 A C 2: 87,139,339 (GRCm39) I89L probably benign Het
Or10w1 T C 19: 13,632,246 (GRCm39) V151A probably benign Het
Or2w25 T A 11: 59,504,899 (GRCm39) F370I possibly damaging Het
Or7a42 T C 10: 78,791,531 (GRCm39) V164A probably benign Het
Pgap2 T C 7: 101,880,595 (GRCm39) V41A probably benign Het
Plekhh1 C T 12: 79,101,821 (GRCm39) T297I probably benign Het
Plxna4 A T 6: 32,173,254 (GRCm39) Y1226N probably benign Het
Polr3b A G 10: 84,520,043 (GRCm39) D653G probably benign Het
Ppp2r2c T C 5: 37,104,486 (GRCm39) F289L possibly damaging Het
Prickle2 A G 6: 92,435,524 (GRCm39) S82P probably damaging Het
Ptger2 T A 14: 45,226,531 (GRCm39) V37D probably damaging Het
Rasa2 G A 9: 96,448,080 (GRCm39) P526S probably benign Het
Rbm47 A T 5: 66,183,838 (GRCm39) I255N probably damaging Het
Sez6 A T 11: 77,853,717 (GRCm39) T296S probably benign Het
Slc2a9 T A 5: 38,549,167 (GRCm39) I316F probably damaging Het
Slc41a1 T A 1: 131,766,884 (GRCm39) V134D probably damaging Het
Slc5a7 A T 17: 54,604,161 (GRCm39) S2T probably benign Het
Slc9a4 C T 1: 40,640,086 (GRCm39) R293C probably damaging Het
Son CATGGACTCCCAGATGTTAGCAACTAGCTCTATGGACTCCCAGATGTTAGCAACTAGCTCTATGGACTCCCAGATGTTAGCAACCAGCAGTATGGACTCCCAGATGTTAGCAACCAGCAGTATGGACTCCCAGATGTTAGCAACCAGCTCCATGGACTCCCAGATGTTAGCAAC CATGGACTCCCAGATGTTAGCAACTAGCTCTATGGACTCCCAGATGTTAGCAACCAGCAGTATGGACTCCCAGATGTTAGCAACCAGCAGTATGGACTCCCAGATGTTAGCAACCAGCTCCATGGACTCCCAGATGTTAGCAAC 16: 91,453,579 (GRCm39) probably benign Het
Suco A G 1: 161,655,783 (GRCm39) F1039L possibly damaging Het
Sycp1 A G 3: 102,832,543 (GRCm39) Y208H possibly damaging Het
Tpr T C 1: 150,317,878 (GRCm39) S2129P probably benign Het
Trim34b T A 7: 103,985,690 (GRCm39) S442T probably damaging Het
Ttn A T 2: 76,573,690 (GRCm39) Y25734* probably null Het
Uchl5 C T 1: 143,675,752 (GRCm39) Q276* probably null Het
Wrn C G 8: 33,738,994 (GRCm39) W1278S probably benign Het
Yeats2 T A 16: 20,041,663 (GRCm39) D1184E probably damaging Het
Zfat G A 15: 68,056,334 (GRCm39) R241W probably damaging Het
Zfp646 T A 7: 127,477,968 (GRCm39) Y48* probably null Het
Zfp998 T C 13: 66,579,118 (GRCm39) Q455R unknown Het
Other mutations in Ndst4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00920:Ndst4 APN 3 125,231,860 (GRCm39) missense probably damaging 0.98
IGL00926:Ndst4 APN 3 125,355,102 (GRCm39) missense probably benign 0.01
IGL01292:Ndst4 APN 3 125,232,403 (GRCm39) missense probably damaging 1.00
IGL01797:Ndst4 APN 3 125,476,802 (GRCm39) missense probably damaging 0.99
R0004:Ndst4 UTSW 3 125,364,475 (GRCm39) missense probably benign 0.03
R0118:Ndst4 UTSW 3 125,405,210 (GRCm39) nonsense probably null
R0652:Ndst4 UTSW 3 125,405,188 (GRCm39) missense possibly damaging 0.93
R1437:Ndst4 UTSW 3 125,355,099 (GRCm39) missense probably damaging 0.97
R1502:Ndst4 UTSW 3 125,231,407 (GRCm39) start gained probably benign
R1900:Ndst4 UTSW 3 125,491,544 (GRCm39) splice site probably null
R1960:Ndst4 UTSW 3 125,232,331 (GRCm39) nonsense probably null
R2249:Ndst4 UTSW 3 125,231,823 (GRCm39) missense probably benign 0.16
R2334:Ndst4 UTSW 3 125,501,825 (GRCm39) missense possibly damaging 0.86
R2345:Ndst4 UTSW 3 125,501,769 (GRCm39) missense possibly damaging 0.95
R3617:Ndst4 UTSW 3 125,231,782 (GRCm39) missense probably benign 0.00
R3713:Ndst4 UTSW 3 125,355,154 (GRCm39) missense possibly damaging 0.93
R3715:Ndst4 UTSW 3 125,355,154 (GRCm39) missense possibly damaging 0.93
R3954:Ndst4 UTSW 3 125,231,554 (GRCm39) missense probably benign 0.01
R4013:Ndst4 UTSW 3 125,476,819 (GRCm39) missense probably damaging 1.00
R4035:Ndst4 UTSW 3 125,232,385 (GRCm39) missense probably damaging 1.00
R4085:Ndst4 UTSW 3 125,403,131 (GRCm39) missense probably benign
R4496:Ndst4 UTSW 3 125,476,922 (GRCm39) missense probably damaging 1.00
R4498:Ndst4 UTSW 3 125,232,007 (GRCm39) missense probably damaging 1.00
R5187:Ndst4 UTSW 3 125,231,560 (GRCm39) missense probably damaging 0.98
R5233:Ndst4 UTSW 3 125,503,766 (GRCm39) missense probably damaging 1.00
R5518:Ndst4 UTSW 3 125,232,105 (GRCm39) missense probably benign
R5575:Ndst4 UTSW 3 125,231,479 (GRCm39) missense probably benign 0.41
R5687:Ndst4 UTSW 3 125,232,258 (GRCm39) missense possibly damaging 0.79
R5940:Ndst4 UTSW 3 125,355,068 (GRCm39) splice site probably benign
R6027:Ndst4 UTSW 3 125,507,025 (GRCm39) missense probably benign 0.38
R6406:Ndst4 UTSW 3 125,232,150 (GRCm39) missense probably benign
R6540:Ndst4 UTSW 3 125,515,801 (GRCm39) nonsense probably null
R6941:Ndst4 UTSW 3 125,403,160 (GRCm39) missense possibly damaging 0.93
R7108:Ndst4 UTSW 3 125,355,120 (GRCm39) missense probably damaging 0.96
R7269:Ndst4 UTSW 3 125,232,007 (GRCm39) missense probably damaging 1.00
R7278:Ndst4 UTSW 3 125,231,952 (GRCm39) missense probably benign 0.00
R7345:Ndst4 UTSW 3 125,508,308 (GRCm39) missense probably benign 0.07
R7418:Ndst4 UTSW 3 125,501,800 (GRCm39) missense probably damaging 0.99
R7592:Ndst4 UTSW 3 125,364,436 (GRCm39) missense probably damaging 0.99
R7714:Ndst4 UTSW 3 125,364,493 (GRCm39) missense probably benign 0.08
R7955:Ndst4 UTSW 3 125,231,831 (GRCm39) nonsense probably null
R8070:Ndst4 UTSW 3 125,508,293 (GRCm39) missense probably damaging 1.00
R8412:Ndst4 UTSW 3 125,364,439 (GRCm39) missense possibly damaging 0.76
R8553:Ndst4 UTSW 3 125,503,756 (GRCm39) missense probably damaging 1.00
R8744:Ndst4 UTSW 3 125,506,989 (GRCm39) missense possibly damaging 0.94
R8933:Ndst4 UTSW 3 125,405,155 (GRCm39) missense probably damaging 0.99
R8940:Ndst4 UTSW 3 125,474,802 (GRCm39) start gained probably benign
R8984:Ndst4 UTSW 3 125,515,810 (GRCm39) missense probably damaging 1.00
R9147:Ndst4 UTSW 3 125,231,722 (GRCm39) missense probably damaging 1.00
R9148:Ndst4 UTSW 3 125,231,722 (GRCm39) missense probably damaging 1.00
R9194:Ndst4 UTSW 3 125,518,385 (GRCm39) missense probably benign 0.19
R9196:Ndst4 UTSW 3 125,518,385 (GRCm39) missense probably benign 0.19
R9202:Ndst4 UTSW 3 125,518,385 (GRCm39) missense probably benign 0.19
R9203:Ndst4 UTSW 3 125,518,385 (GRCm39) missense probably benign 0.19
R9217:Ndst4 UTSW 3 125,518,385 (GRCm39) missense probably benign 0.19
R9311:Ndst4 UTSW 3 125,518,385 (GRCm39) missense probably benign 0.19
R9355:Ndst4 UTSW 3 125,403,246 (GRCm39) missense probably damaging 1.00
R9402:Ndst4 UTSW 3 125,518,385 (GRCm39) missense probably benign 0.19
R9415:Ndst4 UTSW 3 125,518,385 (GRCm39) missense probably benign 0.19
R9475:Ndst4 UTSW 3 125,508,296 (GRCm39) nonsense probably null
R9544:Ndst4 UTSW 3 125,476,808 (GRCm39) missense probably damaging 1.00
R9588:Ndst4 UTSW 3 125,476,808 (GRCm39) missense probably damaging 1.00
R9626:Ndst4 UTSW 3 125,476,829 (GRCm39) missense probably damaging 1.00
R9640:Ndst4 UTSW 3 125,232,196 (GRCm39) missense probably damaging 0.99
R9691:Ndst4 UTSW 3 125,518,344 (GRCm39) missense unknown
R9716:Ndst4 UTSW 3 125,232,211 (GRCm39) missense probably damaging 1.00
X0027:Ndst4 UTSW 3 125,231,595 (GRCm39) missense probably benign
Z1177:Ndst4 UTSW 3 125,364,389 (GRCm39) critical splice acceptor site probably null
Predicted Primers PCR Primer
(F):5'- CTTGAAGTTCTGAAGGTAAGTGAGATG -3'
(R):5'- GCACTATGCTAGCTGGAAAAGG -3'

Sequencing Primer
(F):5'- AGATGTTGGTGGATCAATTACTTCC -3'
(R):5'- TGCTAGCTGGAAAAGGGAATAGTTTG -3'
Posted On 2019-09-13