Incidental Mutation 'R7407:Syce1l'
ID 574796
Institutional Source Beutler Lab
Gene Symbol Syce1l
Ensembl Gene ENSMUSG00000033409
Gene Name synaptonemal complex central element protein 1 like
Synonyms 4930481F22Rik, mmrp2
MMRRC Submission 045488-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7407 (G1)
Quality Score 225.009
Status Not validated
Chromosome 8
Chromosomal Location 114369845-114382165 bp(+) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) C to T at 114381770 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamine to Stop codon at position 237 (Q237*)
Ref Sequence ENSEMBL: ENSMUSP00000034219 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000034219] [ENSMUST00000095173] [ENSMUST00000212269]
AlphaFold Q5D525
Predicted Effect probably null
Transcript: ENSMUST00000034219
AA Change: Q237*
SMART Domains Protein: ENSMUSP00000034219
Gene: ENSMUSG00000033409
AA Change: Q237*

DomainStartEndE-ValueType
Pfam:SYCE1 45 135 4.4e-39 PFAM
low complexity region 139 154 N/A INTRINSIC
low complexity region 196 212 N/A INTRINSIC
Predicted Effect silent
Transcript: ENSMUST00000095173
SMART Domains Protein: ENSMUSP00000092796
Gene: ENSMUSG00000033409

DomainStartEndE-ValueType
Pfam:SYCE1 45 172 8.3e-47 PFAM
Predicted Effect silent
Transcript: ENSMUST00000212269
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 48 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4933405O20Rik A G 7: 50,249,626 (GRCm39) N220S probably damaging Het
Abcb8 T C 5: 24,605,674 (GRCm39) V186A probably benign Het
Actbl2 A T 13: 111,392,752 (GRCm39) E362D probably damaging Het
Adamts17 C A 7: 66,697,304 (GRCm39) Y28* probably null Het
Agtr1b T C 3: 20,369,895 (GRCm39) D237G possibly damaging Het
Amer2 A G 14: 60,616,291 (GRCm39) D162G probably damaging Het
Ankub1 T C 3: 57,572,624 (GRCm39) E366G probably benign Het
Ap5z1 A G 5: 142,452,330 (GRCm39) I88V probably benign Het
Ccdc186 T C 19: 56,801,817 (GRCm39) N100S probably benign Het
Cldn19 A G 4: 119,112,882 (GRCm39) D38G probably damaging Het
Crat C T 2: 30,294,577 (GRCm39) R497Q probably benign Het
Deaf1 G A 7: 140,877,492 (GRCm39) A545V possibly damaging Het
Dicer1 G T 12: 104,688,610 (GRCm39) Y322* probably null Het
Dnajb7 G T 15: 81,291,827 (GRCm39) T170K possibly damaging Het
Flrt2 A T 12: 95,746,074 (GRCm39) E137D probably damaging Het
Galnt12 T C 4: 47,120,362 (GRCm39) F482L probably damaging Het
Gm32742 A G 9: 51,067,974 (GRCm39) V336A probably damaging Het
Gpatch8 G A 11: 102,370,656 (GRCm39) R961W unknown Het
Hcn4 A G 9: 58,766,653 (GRCm39) E738G unknown Het
Kdelr3 A G 15: 79,409,039 (GRCm39) Y76C probably damaging Het
Krt77 T C 15: 101,768,530 (GRCm39) S494G unknown Het
Letmd1 G T 15: 100,367,119 (GRCm39) A39S probably benign Het
Lrrc7 G A 3: 157,840,878 (GRCm39) R1387W probably damaging Het
Meltf T C 16: 31,713,553 (GRCm39) Y599H probably damaging Het
Mybpc1 T A 10: 88,385,209 (GRCm39) I477L probably damaging Het
Nf1 A G 11: 79,338,969 (GRCm39) D1174G probably damaging Het
Or2t6 T A 14: 14,175,402 (GRCm38) I227L probably benign Het
Or8b44 T A 9: 38,410,800 (GRCm39) Y278* probably null Het
Palld G T 8: 61,968,975 (GRCm39) S1283* probably null Het
Pcmtd2 T C 2: 181,488,398 (GRCm39) V183A possibly damaging Het
Pcsk5 T A 19: 17,652,880 (GRCm39) I269F probably damaging Het
Pkd1 T C 17: 24,813,568 (GRCm39) L4036P probably damaging Het
Pkhd1l1 A G 15: 44,458,407 (GRCm39) N4151S possibly damaging Het
Rcor3 C T 1: 191,785,972 (GRCm39) S422N probably benign Het
Rhag A G 17: 41,142,225 (GRCm39) I223V possibly damaging Het
Ssbp4 A G 8: 71,051,672 (GRCm39) Y231H probably damaging Het
Tenm4 T C 7: 96,423,194 (GRCm39) V663A possibly damaging Het
Timd6 A G 11: 46,468,217 (GRCm39) Y97C probably damaging Het
Trim6 T C 7: 103,875,108 (GRCm39) I115T probably damaging Het
Vinac1 A G 2: 128,880,729 (GRCm39) I399T Het
Vmn1r25 T A 6: 57,956,044 (GRCm39) T82S possibly damaging Het
Vmn2r28 A G 7: 5,484,308 (GRCm39) S631P probably damaging Het
Xpo1 T A 11: 23,235,823 (GRCm39) V637E probably damaging Het
Xpo6 A T 7: 125,770,224 (GRCm39) M62K probably damaging Het
Ypel5 A G 17: 73,153,374 (GRCm39) N26S possibly damaging Het
Zbtb24 C A 10: 41,340,775 (GRCm39) Q624K possibly damaging Het
Zfp629 T C 7: 127,209,415 (GRCm39) D798G probably benign Het
Zfp687 C T 3: 94,914,841 (GRCm39) R1220H probably damaging Het
Other mutations in Syce1l
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00339:Syce1l APN 8 114,376,134 (GRCm39) missense probably damaging 0.99
IGL00783:Syce1l APN 8 114,379,494 (GRCm39) missense probably benign 0.23
IGL00784:Syce1l APN 8 114,379,494 (GRCm39) missense probably benign 0.23
IGL02748:Syce1l APN 8 114,382,097 (GRCm39) utr 3 prime probably benign
IGL03003:Syce1l APN 8 114,380,699 (GRCm39) missense probably damaging 0.99
R0101:Syce1l UTSW 8 114,382,061 (GRCm39) missense probably benign 0.41
R0486:Syce1l UTSW 8 114,381,395 (GRCm39) critical splice acceptor site probably null
R0492:Syce1l UTSW 8 114,380,700 (GRCm39) missense possibly damaging 0.86
R1709:Syce1l UTSW 8 114,380,662 (GRCm39) critical splice acceptor site probably null
R1783:Syce1l UTSW 8 114,381,466 (GRCm39) missense possibly damaging 0.66
R2307:Syce1l UTSW 8 114,369,937 (GRCm39) critical splice donor site probably null
R3110:Syce1l UTSW 8 114,381,579 (GRCm39) missense probably benign
R3111:Syce1l UTSW 8 114,381,579 (GRCm39) missense probably benign
R3112:Syce1l UTSW 8 114,381,579 (GRCm39) missense probably benign
R3790:Syce1l UTSW 8 114,369,897 (GRCm39) missense possibly damaging 0.63
R5112:Syce1l UTSW 8 114,378,274 (GRCm39) missense probably damaging 0.99
R5398:Syce1l UTSW 8 114,379,145 (GRCm39) missense probably damaging 1.00
R6373:Syce1l UTSW 8 114,376,143 (GRCm39) missense probably benign
R8296:Syce1l UTSW 8 114,380,721 (GRCm39) missense possibly damaging 0.78
R9262:Syce1l UTSW 8 114,380,738 (GRCm39) critical splice donor site probably null
R9475:Syce1l UTSW 8 114,381,735 (GRCm39) missense probably benign
R9600:Syce1l UTSW 8 114,381,750 (GRCm39) missense unknown
Z1176:Syce1l UTSW 8 114,382,049 (GRCm39) missense probably benign 0.26
Predicted Primers PCR Primer
(F):5'- ACCTTGATGTCCCACTACCG -3'
(R):5'- TTGGACACTTTCAACTAGACACTCC -3'

Sequencing Primer
(F):5'- AGGGACTCTGCTGCGAG -3'
(R):5'- CATCTGCTGGCTCCTTGTGG -3'
Posted On 2019-10-07