Incidental Mutation 'R7407:Syce1l'
ID574796
Institutional Source Beutler Lab
Gene Symbol Syce1l
Ensembl Gene ENSMUSG00000033409
Gene Namesynaptonemal complex central element protein 1 like
Synonyms4930481F22Rik, mmrp2
MMRRC Submission
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R7407 (G1)
Quality Score225.009
Status Not validated
Chromosome8
Chromosomal Location113643213-113655533 bp(+) (GRCm38)
Type of Mutationnonsense
DNA Base Change (assembly) C to T at 113655138 bp
ZygosityHeterozygous
Amino Acid Change Glutamine to Stop codon at position 237 (Q237*)
Ref Sequence ENSEMBL: ENSMUSP00000034219 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000034219] [ENSMUST00000095173] [ENSMUST00000212269]
Predicted Effect probably null
Transcript: ENSMUST00000034219
AA Change: Q237*
SMART Domains Protein: ENSMUSP00000034219
Gene: ENSMUSG00000033409
AA Change: Q237*

DomainStartEndE-ValueType
Pfam:SYCE1 45 135 4.4e-39 PFAM
low complexity region 139 154 N/A INTRINSIC
low complexity region 196 212 N/A INTRINSIC
Predicted Effect silent
Transcript: ENSMUST00000095173
SMART Domains Protein: ENSMUSP00000092796
Gene: ENSMUSG00000033409

DomainStartEndE-ValueType
Pfam:SYCE1 45 172 8.3e-47 PFAM
Predicted Effect silent
Transcript: ENSMUST00000212269
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 48 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4933405O20Rik A G 7: 50,599,878 N220S probably damaging Het
Abcb8 T C 5: 24,400,676 V186A probably benign Het
Actbl2 A T 13: 111,256,218 E362D probably damaging Het
Adamts17 C A 7: 67,047,556 Y28* probably null Het
Agtr1b T C 3: 20,315,731 D237G possibly damaging Het
Amer2 A G 14: 60,378,842 D162G probably damaging Het
Ankub1 T C 3: 57,665,203 E366G probably benign Het
Ap5z1 A G 5: 142,466,575 I88V probably benign Het
BC053393 A G 11: 46,577,390 Y97C probably damaging Het
Ccdc186 T C 19: 56,813,385 N100S probably benign Het
Cldn19 A G 4: 119,255,685 D38G probably damaging Het
Crat C T 2: 30,404,565 R497Q probably benign Het
Deaf1 G A 7: 141,297,579 A545V possibly damaging Het
Dicer1 G T 12: 104,722,351 Y322* probably null Het
Dnajb7 G T 15: 81,407,626 T170K possibly damaging Het
Flrt2 A T 12: 95,779,300 E137D probably damaging Het
Galnt12 T C 4: 47,120,362 F482L probably damaging Het
Gm14025 A G 2: 129,038,809 I399T Het
Gm32742 A G 9: 51,156,674 V336A probably damaging Het
Gpatch8 G A 11: 102,479,830 R961W unknown Het
Hcn4 A G 9: 58,859,370 E738G unknown Het
Kdelr3 A G 15: 79,524,838 Y76C probably damaging Het
Krt77 T C 15: 101,860,095 S494G unknown Het
Letmd1 G T 15: 100,469,238 A39S probably benign Het
Lrrc7 G A 3: 158,135,241 R1387W probably damaging Het
Meltf T C 16: 31,894,735 Y599H probably damaging Het
Mybpc1 T A 10: 88,549,347 I477L probably damaging Het
Nf1 A G 11: 79,448,143 D1174G probably damaging Het
Olfr720 T A 14: 14,175,402 I227L probably benign Het
Olfr907 T A 9: 38,499,504 Y278* probably null Het
Palld G T 8: 61,515,941 S1283* probably null Het
Pcmtd2 T C 2: 181,846,605 V183A possibly damaging Het
Pcsk5 T A 19: 17,675,516 I269F probably damaging Het
Pkd1 T C 17: 24,594,594 L4036P probably damaging Het
Pkhd1l1 A G 15: 44,595,011 N4151S possibly damaging Het
Rcor3 C T 1: 192,101,672 S422N probably benign Het
Rhag A G 17: 40,831,334 I223V possibly damaging Het
Ssbp4 A G 8: 70,599,022 Y231H probably damaging Het
Tenm4 T C 7: 96,773,987 V663A possibly damaging Het
Trim6 T C 7: 104,225,901 I115T probably damaging Het
Vmn1r25 T A 6: 57,979,059 T82S possibly damaging Het
Vmn2r28 A G 7: 5,481,309 S631P probably damaging Het
Xpo1 T A 11: 23,285,823 V637E probably damaging Het
Xpo6 A T 7: 126,171,052 M62K probably damaging Het
Ypel5 A G 17: 72,846,379 N26S possibly damaging Het
Zbtb24 C A 10: 41,464,779 Q624K possibly damaging Het
Zfp629 T C 7: 127,610,243 D798G probably benign Het
Zfp687 C T 3: 95,007,530 R1220H probably damaging Het
Other mutations in Syce1l
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00339:Syce1l APN 8 113649502 missense probably damaging 0.99
IGL00783:Syce1l APN 8 113652862 missense probably benign 0.23
IGL00784:Syce1l APN 8 113652862 missense probably benign 0.23
IGL02748:Syce1l APN 8 113655465 utr 3 prime probably benign
IGL03003:Syce1l APN 8 113654067 missense probably damaging 0.99
R0101:Syce1l UTSW 8 113655429 missense probably benign 0.41
R0486:Syce1l UTSW 8 113654763 critical splice acceptor site probably null
R0492:Syce1l UTSW 8 113654068 missense possibly damaging 0.86
R1709:Syce1l UTSW 8 113654030 critical splice acceptor site probably null
R1783:Syce1l UTSW 8 113654834 missense possibly damaging 0.66
R2307:Syce1l UTSW 8 113643305 critical splice donor site probably null
R3110:Syce1l UTSW 8 113654947 missense probably benign
R3111:Syce1l UTSW 8 113654947 missense probably benign
R3112:Syce1l UTSW 8 113654947 missense probably benign
R3790:Syce1l UTSW 8 113643265 missense possibly damaging 0.63
R5112:Syce1l UTSW 8 113651642 missense probably damaging 0.99
R5398:Syce1l UTSW 8 113652513 missense probably damaging 1.00
R6373:Syce1l UTSW 8 113649511 missense probably benign
R8296:Syce1l UTSW 8 113654089 missense possibly damaging 0.78
Z1176:Syce1l UTSW 8 113655417 missense probably benign 0.26
Predicted Primers PCR Primer
(F):5'- ACCTTGATGTCCCACTACCG -3'
(R):5'- TTGGACACTTTCAACTAGACACTCC -3'

Sequencing Primer
(F):5'- AGGGACTCTGCTGCGAG -3'
(R):5'- CATCTGCTGGCTCCTTGTGG -3'
Posted On2019-10-07