Mutagenetix > Incidental Mutation

Incidental Mutation 'R7408:Pramel7'

574828

Institutional Source

Beutler Lab

Gene Symbol

Pramel7

Ensembl Gene

ENSMUSG00000025839

Gene Name

PRAME like 7

Synonyms

MMRRC Submission

045489-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.085) question?

Stock #

R7408 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

87319432-87322762 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 87321189 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Valine at position 282 (D282V)

Ref Sequence

ENSEMBL: ENSMUSP00000026957 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026957]

AlphaFold

Q810Y8

Predicted Effect

possibly damaging
Transcript: ENSMUST00000026957
AA Change: D282V

PolyPhen 2 Score 0.891 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000026957
Gene: ENSMUSG00000025839
AA Change: D282V

Domain	Start	End	E-Value	Type
SCOP:d1a4ya_	207	407	3e-14	SMART

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (71/71)

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Agfg1	T	C	1: 82,860,030 (GRCm39)	F299S	probably damaging	Het
Arhgap32	A	T	9: 32,157,220 (GRCm39)	E72D	probably benign	Het
Arid1a	G	T	4: 133,408,391 (GRCm39)	Q1654K	unknown	Het
Atp6v1f	A	C	6: 29,470,194 (GRCm39)	H96P	probably damaging	Het
Cast	A	G	13: 74,887,960 (GRCm39)	V161A	probably damaging	Het
Ccdc186	A	T	19: 56,796,610 (GRCm39)	C320S	probably damaging	Het
Cgn	T	A	3: 94,670,362 (GRCm39)	K1031*	probably null	Het
Cnot10	T	C	9: 114,460,894 (GRCm39)	N92S	probably benign	Het
Crat	C	T	2: 30,294,577 (GRCm39)	R497Q	probably benign	Het
Cstf2t	T	C	19: 31,060,593 (GRCm39)	V43A	possibly damaging	Het
D930020B18Rik	T	C	10: 121,525,739 (GRCm39)	L547P	probably damaging	Het
Dennd1a	G	A	2: 37,742,184 (GRCm39)		probably null	Het
Dtnb	T	A	12: 3,694,272 (GRCm39)		probably null	Het
Entpd1	A	G	19: 40,727,309 (GRCm39)	N486D	possibly damaging	Het
Fes	G	A	7: 80,028,410 (GRCm39)	R736C	probably damaging	Het
Galr1	T	G	18: 82,411,990 (GRCm39)	Y292S	probably damaging	Het
Gda	T	A	19: 21,405,988 (GRCm39)	D80V	probably damaging	Het
Ghr	A	G	15: 3,377,054 (GRCm39)	C56R	probably benign	Het
Golgb1	A	G	16: 36,718,909 (GRCm39)	T313A	probably damaging	Het
Gpaa1	A	T	15: 76,217,193 (GRCm39)	D236V	probably damaging	Het
Gsdmc	A	G	15: 63,676,315 (GRCm39)	S43P	probably benign	Het
Gsdmd	A	G	15: 75,738,202 (GRCm39)	E295G	probably damaging	Het
Htatip2	A	G	7: 49,409,534 (GRCm39)	K96R	probably benign	Het
Insm1	T	A	2: 146,064,711 (GRCm39)	F176I	probably benign	Het
Itih1	T	C	14: 30,665,117 (GRCm39)	E36G	probably benign	Het
Jak1	A	G	4: 101,032,379 (GRCm39)	V409A	probably damaging	Het
Knl1	A	G	2: 118,901,073 (GRCm39)	I925V	possibly damaging	Het
Lcmt2	A	G	2: 120,969,185 (GRCm39)	S413P	probably benign	Het
Lmo7	T	C	14: 102,118,389 (GRCm39)	S205P	probably damaging	Het
Lrch3	C	A	16: 32,807,113 (GRCm39)	S462*	probably null	Het
Lrrtm2	T	C	18: 35,346,688 (GRCm39)	I205V	possibly damaging	Het
Mark3	T	G	12: 111,600,223 (GRCm39)	N479K	probably damaging	Het
Mrpl19	C	T	6: 81,942,793 (GRCm39)	G39D	possibly damaging	Het
Msh4	A	G	3: 153,582,382 (GRCm39)	Y497H	probably benign	Het
Msl2	T	A	9: 100,979,316 (GRCm39)	D563E	probably benign	Het
Mta1	G	A	12: 113,095,088 (GRCm39)		probably null	Het
Nalcn	T	A	14: 123,529,272 (GRCm39)	Q1401L	probably benign	Het
Ncapg	T	C	5: 45,853,135 (GRCm39)	L867P	probably benign	Het
Nkapl	T	C	13: 21,652,013 (GRCm39)	D200G	unknown	Het
Nos1	A	C	5: 118,005,583 (GRCm39)	E101A	probably damaging	Het
Npat	T	C	9: 53,481,216 (GRCm39)	S1008P	probably damaging	Het
Ntng1	A	G	3: 109,760,398 (GRCm39)	I358T	probably benign	Het
Or11h6	A	G	14: 50,879,852 (GRCm39)	E32G	probably benign	Het
Or13p4	C	T	4: 118,546,859 (GRCm39)	M263I	probably damaging	Het
Or2d2b	A	G	7: 106,705,274 (GRCm39)	S265P	probably benign	Het
Or4b1	T	A	2: 89,980,188 (GRCm39)	H54L	probably benign	Het
Or6c88	A	G	10: 129,406,493 (GRCm39)		probably benign	Het
Pex1	A	G	5: 3,680,222 (GRCm39)	D948G	probably damaging	Het
Pkd1l2	A	T	8: 117,755,218 (GRCm39)	I1660N	possibly damaging	Het
Pkp2	T	A	16: 16,079,537 (GRCm39)	Y540N	possibly damaging	Het
Pkp4	T	C	2: 59,142,110 (GRCm39)	L471P	probably damaging	Het
Plekhm3	A	T	1: 64,977,143 (GRCm39)	M109K	probably benign	Het
Plekhn1	T	C	4: 156,318,418 (GRCm39)	N68S	probably benign	Het
Pxdn	T	C	12: 30,040,944 (GRCm39)	Y407H	probably benign	Het
Rab3ip	T	C	10: 116,773,546 (GRCm39)	D89G	possibly damaging	Het
Rad17	G	A	13: 100,766,019 (GRCm39)	Q370*	probably null	Het
Robo4	T	C	9: 37,322,277 (GRCm39)	C751R	probably benign	Het
Sez6	A	G	11: 77,844,356 (GRCm39)	T60A	probably damaging	Het
Socs4	A	G	14: 47,527,296 (GRCm39)	H77R	probably benign	Het
Srrm3	T	A	5: 135,881,060 (GRCm39)	M120K	probably benign	Het
Steap4	A	T	5: 8,028,453 (GRCm39)	I344F	probably benign	Het
Stk36	T	A	1: 74,672,725 (GRCm39)	F989Y	probably damaging	Het
Toporsl	A	T	4: 52,612,108 (GRCm39)	Q667L	probably benign	Het
Tspan17	T	C	13: 54,937,466 (GRCm39)	F20S	probably benign	Het
Tubgcp3	G	A	8: 12,711,359 (GRCm39)	Q65*	probably null	Het
Ush2a	A	T	1: 188,465,726 (GRCm39)	I2765F	probably benign	Het
Vwa8	A	C	14: 79,219,674 (GRCm39)		probably null	Het
Wdfy4	A	G	14: 32,800,264 (GRCm39)	V1954A		Het
Xrn2	T	A	2: 146,884,017 (GRCm39)		probably null	Het
Zfp687	C	T	3: 94,914,841 (GRCm39)	R1220H	probably damaging	Het

Other mutations in Pramel7

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00471:Pramel7	APN	2	87,321,429 (GRCm39)	missense	probably damaging	1.00
IGL01302:Pramel7	APN	2	87,321,717 (GRCm39)	missense	possibly damaging	0.58
IGL01365:Pramel7	APN	2	87,321,757 (GRCm39)	splice site	probably benign
IGL01728:Pramel7	APN	2	87,321,674 (GRCm39)	missense	possibly damaging	0.95
IGL01769:Pramel7	APN	2	87,319,932 (GRCm39)	missense	probably benign	0.09
IGL01932:Pramel7	APN	2	87,321,457 (GRCm39)	missense	possibly damaging	0.80
IGL02971:Pramel7	APN	2	87,320,417 (GRCm39)	missense	probably benign	0.03
IGL03376:Pramel7	APN	2	87,319,947 (GRCm39)	missense	probably damaging	1.00
IGL03380:Pramel7	APN	2	87,321,716 (GRCm39)	missense	probably benign	0.38
R0625:Pramel7	UTSW	2	87,321,352 (GRCm39)	missense	probably benign	0.02
R1077:Pramel7	UTSW	2	87,321,534 (GRCm39)	missense	probably damaging	1.00
R1455:Pramel7	UTSW	2	87,320,067 (GRCm39)	missense	probably benign	0.00
R1666:Pramel7	UTSW	2	87,322,747 (GRCm39)	missense	probably damaging	0.99
R1863:Pramel7	UTSW	2	87,321,675 (GRCm39)	missense	probably benign	0.35
R1977:Pramel7	UTSW	2	87,321,465 (GRCm39)	missense	probably benign	0.01
R2141:Pramel7	UTSW	2	87,320,321 (GRCm39)	missense	probably damaging	1.00
R3027:Pramel7	UTSW	2	87,321,747 (GRCm39)	missense	probably benign	0.01
R4374:Pramel7	UTSW	2	87,320,415 (GRCm39)	missense	probably benign	0.05
R4735:Pramel7	UTSW	2	87,321,187 (GRCm39)	nonsense	probably null
R5232:Pramel7	UTSW	2	87,320,320 (GRCm39)	missense	probably damaging	0.97
R6255:Pramel7	UTSW	2	87,320,007 (GRCm39)	missense	probably benign	0.00
R6611:Pramel7	UTSW	2	87,320,393 (GRCm39)	missense	probably damaging	1.00
R6898:Pramel7	UTSW	2	87,320,070 (GRCm39)	missense	probably damaging	0.98
R7246:Pramel7	UTSW	2	87,322,509 (GRCm39)	missense	probably damaging	1.00
R7293:Pramel7	UTSW	2	87,322,706 (GRCm39)	missense	probably benign	0.28
R7431:Pramel7	UTSW	2	87,320,282 (GRCm39)	missense	possibly damaging	0.65
R7469:Pramel7	UTSW	2	87,321,748 (GRCm39)	missense	probably benign	0.01
R8300:Pramel7	UTSW	2	87,319,967 (GRCm39)	missense	probably benign	0.01
R8803:Pramel7	UTSW	2	87,320,405 (GRCm39)	missense	probably benign	0.00
R8940:Pramel7	UTSW	2	87,321,612 (GRCm39)	missense	probably benign	0.03
R9281:Pramel7	UTSW	2	87,321,495 (GRCm39)	missense	probably damaging	1.00
R9723:Pramel7	UTSW	2	87,320,019 (GRCm39)	missense	possibly damaging	0.85

Predicted Primers

PCR Primer
(F):5'- GGATACTGGGCTTCTACCACAG -3'
(R):5'- ACTGGCAAAATTCGTACCTTTC -3'

Sequencing Primer
(F):5'- GGCTTCTACCACAGCAGCTC -3'
(R):5'- CTGGCAAAATTCGTACCTTTCATTAG -3'

Posted On

2019-10-07