Mutagenetix > Incidental Mutation

Incidental Mutation 'R7408:Tubgcp3'

574853

Institutional Source

Beutler Lab

Gene Symbol

Tubgcp3

Ensembl Gene

ENSMUSG00000000759

Gene Name

tubulin, gamma complex component 3

Synonyms

GCP3, Spc98p

MMRRC Submission

045489-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.968) question?

Stock #

R7408 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

12664277-12722141 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to A at 12711359 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Stop codon at position 65 (Q65*)

Ref Sequence

ENSEMBL: ENSMUSP00000000776 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000000776] [ENSMUST00000164774]

AlphaFold

P58854

Predicted Effect

probably null
Transcript: ENSMUST00000000776
AA Change: Q65*

SMART Domains

Protein: ENSMUSP00000000776
Gene: ENSMUSG00000000759
AA Change: Q65*

Domain	Start	End	E-Value	Type
low complexity region	152	171	N/A	INTRINSIC
Pfam:Spc97_Spc98	251	761	9.5e-124	PFAM
coiled coil region	787	814	N/A	INTRINSIC
low complexity region	821	827	N/A	INTRINSIC
low complexity region	890	903	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000164774
AA Change: Q65*

SMART Domains

Protein: ENSMUSP00000127741
Gene: ENSMUSG00000000759
AA Change: Q65*

Domain	Start	End	E-Value	Type
low complexity region	152	171	N/A	INTRINSIC
Pfam:Spc97_Spc98	251	361	3.5e-16	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000165321

SMART Domains

Protein: ENSMUSP00000131051
Gene: ENSMUSG00000000759

Domain	Start	End	E-Value	Type
low complexity region	35	54	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000172056
AA Change: Q41*

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (71/71)

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Agfg1	T	C	1: 82,860,030 (GRCm39)	F299S	probably damaging	Het
Arhgap32	A	T	9: 32,157,220 (GRCm39)	E72D	probably benign	Het
Arid1a	G	T	4: 133,408,391 (GRCm39)	Q1654K	unknown	Het
Atp6v1f	A	C	6: 29,470,194 (GRCm39)	H96P	probably damaging	Het
Cast	A	G	13: 74,887,960 (GRCm39)	V161A	probably damaging	Het
Ccdc186	A	T	19: 56,796,610 (GRCm39)	C320S	probably damaging	Het
Cgn	T	A	3: 94,670,362 (GRCm39)	K1031*	probably null	Het
Cnot10	T	C	9: 114,460,894 (GRCm39)	N92S	probably benign	Het
Crat	C	T	2: 30,294,577 (GRCm39)	R497Q	probably benign	Het
Cstf2t	T	C	19: 31,060,593 (GRCm39)	V43A	possibly damaging	Het
D930020B18Rik	T	C	10: 121,525,739 (GRCm39)	L547P	probably damaging	Het
Dennd1a	G	A	2: 37,742,184 (GRCm39)		probably null	Het
Dtnb	T	A	12: 3,694,272 (GRCm39)		probably null	Het
Entpd1	A	G	19: 40,727,309 (GRCm39)	N486D	possibly damaging	Het
Fes	G	A	7: 80,028,410 (GRCm39)	R736C	probably damaging	Het
Galr1	T	G	18: 82,411,990 (GRCm39)	Y292S	probably damaging	Het
Gda	T	A	19: 21,405,988 (GRCm39)	D80V	probably damaging	Het
Ghr	A	G	15: 3,377,054 (GRCm39)	C56R	probably benign	Het
Golgb1	A	G	16: 36,718,909 (GRCm39)	T313A	probably damaging	Het
Gpaa1	A	T	15: 76,217,193 (GRCm39)	D236V	probably damaging	Het
Gsdmc	A	G	15: 63,676,315 (GRCm39)	S43P	probably benign	Het
Gsdmd	A	G	15: 75,738,202 (GRCm39)	E295G	probably damaging	Het
Htatip2	A	G	7: 49,409,534 (GRCm39)	K96R	probably benign	Het
Insm1	T	A	2: 146,064,711 (GRCm39)	F176I	probably benign	Het
Itih1	T	C	14: 30,665,117 (GRCm39)	E36G	probably benign	Het
Jak1	A	G	4: 101,032,379 (GRCm39)	V409A	probably damaging	Het
Knl1	A	G	2: 118,901,073 (GRCm39)	I925V	possibly damaging	Het
Lcmt2	A	G	2: 120,969,185 (GRCm39)	S413P	probably benign	Het
Lmo7	T	C	14: 102,118,389 (GRCm39)	S205P	probably damaging	Het
Lrch3	C	A	16: 32,807,113 (GRCm39)	S462*	probably null	Het
Lrrtm2	T	C	18: 35,346,688 (GRCm39)	I205V	possibly damaging	Het
Mark3	T	G	12: 111,600,223 (GRCm39)	N479K	probably damaging	Het
Mrpl19	C	T	6: 81,942,793 (GRCm39)	G39D	possibly damaging	Het
Msh4	A	G	3: 153,582,382 (GRCm39)	Y497H	probably benign	Het
Msl2	T	A	9: 100,979,316 (GRCm39)	D563E	probably benign	Het
Mta1	G	A	12: 113,095,088 (GRCm39)		probably null	Het
Nalcn	T	A	14: 123,529,272 (GRCm39)	Q1401L	probably benign	Het
Ncapg	T	C	5: 45,853,135 (GRCm39)	L867P	probably benign	Het
Nkapl	T	C	13: 21,652,013 (GRCm39)	D200G	unknown	Het
Nos1	A	C	5: 118,005,583 (GRCm39)	E101A	probably damaging	Het
Npat	T	C	9: 53,481,216 (GRCm39)	S1008P	probably damaging	Het
Ntng1	A	G	3: 109,760,398 (GRCm39)	I358T	probably benign	Het
Or11h6	A	G	14: 50,879,852 (GRCm39)	E32G	probably benign	Het
Or13p4	C	T	4: 118,546,859 (GRCm39)	M263I	probably damaging	Het
Or2d2b	A	G	7: 106,705,274 (GRCm39)	S265P	probably benign	Het
Or4b1	T	A	2: 89,980,188 (GRCm39)	H54L	probably benign	Het
Or6c88	A	G	10: 129,406,493 (GRCm39)		probably benign	Het
Pex1	A	G	5: 3,680,222 (GRCm39)	D948G	probably damaging	Het
Pkd1l2	A	T	8: 117,755,218 (GRCm39)	I1660N	possibly damaging	Het
Pkp2	T	A	16: 16,079,537 (GRCm39)	Y540N	possibly damaging	Het
Pkp4	T	C	2: 59,142,110 (GRCm39)	L471P	probably damaging	Het
Plekhm3	A	T	1: 64,977,143 (GRCm39)	M109K	probably benign	Het
Plekhn1	T	C	4: 156,318,418 (GRCm39)	N68S	probably benign	Het
Pramel7	T	A	2: 87,321,189 (GRCm39)	D282V	possibly damaging	Het
Pxdn	T	C	12: 30,040,944 (GRCm39)	Y407H	probably benign	Het
Rab3ip	T	C	10: 116,773,546 (GRCm39)	D89G	possibly damaging	Het
Rad17	G	A	13: 100,766,019 (GRCm39)	Q370*	probably null	Het
Robo4	T	C	9: 37,322,277 (GRCm39)	C751R	probably benign	Het
Sez6	A	G	11: 77,844,356 (GRCm39)	T60A	probably damaging	Het
Socs4	A	G	14: 47,527,296 (GRCm39)	H77R	probably benign	Het
Srrm3	T	A	5: 135,881,060 (GRCm39)	M120K	probably benign	Het
Steap4	A	T	5: 8,028,453 (GRCm39)	I344F	probably benign	Het
Stk36	T	A	1: 74,672,725 (GRCm39)	F989Y	probably damaging	Het
Toporsl	A	T	4: 52,612,108 (GRCm39)	Q667L	probably benign	Het
Tspan17	T	C	13: 54,937,466 (GRCm39)	F20S	probably benign	Het
Ush2a	A	T	1: 188,465,726 (GRCm39)	I2765F	probably benign	Het
Vwa8	A	C	14: 79,219,674 (GRCm39)		probably null	Het
Wdfy4	A	G	14: 32,800,264 (GRCm39)	V1954A		Het
Xrn2	T	A	2: 146,884,017 (GRCm39)		probably null	Het
Zfp687	C	T	3: 94,914,841 (GRCm39)	R1220H	probably damaging	Het

Other mutations in Tubgcp3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00424:Tubgcp3	APN	8	12,671,809 (GRCm39)	missense	probably benign	0.00
IGL00583:Tubgcp3	APN	8	12,671,906 (GRCm39)	nonsense	probably null
IGL01289:Tubgcp3	APN	8	12,689,625 (GRCm39)	missense	probably damaging	1.00
IGL01578:Tubgcp3	APN	8	12,711,297 (GRCm39)	splice site	probably benign
IGL01716:Tubgcp3	APN	8	12,691,094 (GRCm39)	splice site	probably benign
IGL01943:Tubgcp3	APN	8	12,704,301 (GRCm39)	missense	probably damaging	1.00
IGL02020:Tubgcp3	APN	8	12,687,780 (GRCm39)	missense	possibly damaging	0.46
IGL02345:Tubgcp3	APN	8	12,675,056 (GRCm39)	missense	probably damaging	1.00
IGL02555:Tubgcp3	APN	8	12,689,595 (GRCm39)	missense	probably benign	0.36
IGL02644:Tubgcp3	APN	8	12,698,733 (GRCm39)	missense	probably damaging	1.00
IGL02976:Tubgcp3	APN	8	12,682,300 (GRCm39)	missense	probably damaging	1.00
IGL03240:Tubgcp3	APN	8	12,699,797 (GRCm39)	missense	probably benign	0.07
IGL03287:Tubgcp3	APN	8	12,689,630 (GRCm39)	missense	possibly damaging	0.77
Tinky_winky	UTSW	8	12,700,171 (GRCm39)	missense	probably damaging	1.00
R0145:Tubgcp3	UTSW	8	12,707,561 (GRCm39)	missense	probably benign	0.01
R0379:Tubgcp3	UTSW	8	12,691,116 (GRCm39)	missense	probably damaging	0.97
R0558:Tubgcp3	UTSW	8	12,703,462 (GRCm39)	missense	probably benign	0.00
R1490:Tubgcp3	UTSW	8	12,689,550 (GRCm39)	missense	probably damaging	1.00
R1709:Tubgcp3	UTSW	8	12,689,532 (GRCm39)	nonsense	probably null
R1768:Tubgcp3	UTSW	8	12,699,686 (GRCm39)	unclassified	probably benign
R1921:Tubgcp3	UTSW	8	12,671,932 (GRCm39)	nonsense	probably null
R1928:Tubgcp3	UTSW	8	12,713,988 (GRCm39)	missense	possibly damaging	0.94
R2161:Tubgcp3	UTSW	8	12,682,292 (GRCm39)	missense	probably benign	0.22
R3120:Tubgcp3	UTSW	8	12,707,626 (GRCm39)	missense	possibly damaging	0.51
R3434:Tubgcp3	UTSW	8	12,708,381 (GRCm39)	splice site	probably null
R4011:Tubgcp3	UTSW	8	12,689,634 (GRCm39)	nonsense	probably null
R4162:Tubgcp3	UTSW	8	12,689,547 (GRCm39)	missense	possibly damaging	0.46
R4300:Tubgcp3	UTSW	8	12,707,600 (GRCm39)	missense	probably damaging	0.99
R4350:Tubgcp3	UTSW	8	12,691,117 (GRCm39)	missense	probably benign	0.19
R4529:Tubgcp3	UTSW	8	12,713,932 (GRCm39)	missense	probably damaging	0.98
R4530:Tubgcp3	UTSW	8	12,713,932 (GRCm39)	missense	probably damaging	0.98
R4531:Tubgcp3	UTSW	8	12,713,932 (GRCm39)	missense	probably damaging	0.98
R4676:Tubgcp3	UTSW	8	12,700,171 (GRCm39)	missense	probably damaging	1.00
R4730:Tubgcp3	UTSW	8	12,707,654 (GRCm39)	missense	probably benign	0.03
R4828:Tubgcp3	UTSW	8	12,721,987 (GRCm39)	missense	probably benign
R4860:Tubgcp3	UTSW	8	12,699,722 (GRCm39)	missense	probably benign	0.03
R4860:Tubgcp3	UTSW	8	12,699,722 (GRCm39)	missense	probably benign	0.03
R5610:Tubgcp3	UTSW	8	12,689,577 (GRCm39)	missense	probably damaging	1.00
R5625:Tubgcp3	UTSW	8	12,674,888 (GRCm39)	missense	possibly damaging	0.46
R5650:Tubgcp3	UTSW	8	12,698,670 (GRCm39)	missense	probably damaging	0.98
R5775:Tubgcp3	UTSW	8	12,675,056 (GRCm39)	missense	probably damaging	1.00
R6257:Tubgcp3	UTSW	8	12,699,835 (GRCm39)	splice site	probably null
R6314:Tubgcp3	UTSW	8	12,698,625 (GRCm39)	missense	probably benign	0.02
R6970:Tubgcp3	UTSW	8	12,687,000 (GRCm39)	missense	probably damaging	0.98
R7173:Tubgcp3	UTSW	8	12,689,259 (GRCm39)	splice site	probably null
R7502:Tubgcp3	UTSW	8	12,691,207 (GRCm39)	missense	probably damaging	0.99
R7701:Tubgcp3	UTSW	8	12,705,974 (GRCm39)	missense	probably benign
R7739:Tubgcp3	UTSW	8	12,707,561 (GRCm39)	missense	probably benign	0.01
R8169:Tubgcp3	UTSW	8	12,666,099 (GRCm39)	missense	probably benign
R8327:Tubgcp3	UTSW	8	12,704,343 (GRCm39)	missense	probably benign	0.11
R8723:Tubgcp3	UTSW	8	12,671,899 (GRCm39)	missense	probably damaging	0.96
R9212:Tubgcp3	UTSW	8	12,691,200 (GRCm39)	missense	possibly damaging	0.67
R9393:Tubgcp3	UTSW	8	12,703,411 (GRCm39)	missense	probably damaging	1.00
R9413:Tubgcp3	UTSW	8	12,674,885 (GRCm39)	missense	probably damaging	1.00
R9650:Tubgcp3	UTSW	8	12,705,974 (GRCm39)	missense	probably benign
R9739:Tubgcp3	UTSW	8	12,699,744 (GRCm39)	missense	probably benign	0.06
R9748:Tubgcp3	UTSW	8	12,699,758 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCAAGTGGAAGCACTCTCTACAAC -3'
(R):5'- CCAGCCCAAGAGTCTTCATG -3'

Sequencing Primer
(F):5'- CTAAAAGCCATTAGTGATCACAGG -3'
(R):5'- GCGAGCTGACCAAACCGATATTG -3'

Posted On

2019-10-07