Mutagenetix > Incidental Mutation

Incidental Mutation 'R7421:Slfn9'

575676

Institutional Source

Beutler Lab

Gene Symbol

Slfn9

Ensembl Gene

ENSMUSG00000069793

Gene Name

schlafen 9

Synonyms

9830137M10Rik

MMRRC Submission

045499-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.059) question?

Stock #

R7421 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

82869216-82882656 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 82878562 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 189 (I189T)

Ref Sequence

ENSEMBL: ENSMUSP00000044435 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038211] [ENSMUST00000092840] [ENSMUST00000138797]

AlphaFold

B1ARD6

Predicted Effect

probably damaging
Transcript: ENSMUST00000038211
AA Change: I189T

PolyPhen 2 Score 0.959 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000044435
Gene: ENSMUSG00000069793
AA Change: I189T

Domain	Start	End	E-Value	Type
low complexity region	28	44	N/A	INTRINSIC
Pfam:AlbA_2	205	343	2.3e-17	PFAM
Pfam:DUF2075	592	766	9.7e-11	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000092840
AA Change: I189T

PolyPhen 2 Score 0.959 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000090515
Gene: ENSMUSG00000069793
AA Change: I189T

Domain	Start	End	E-Value	Type
low complexity region	28	44	N/A	INTRINSIC
Pfam:AAA_4	205	344	1.6e-18	PFAM
Pfam:DUF2075	592	766	1.2e-11	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000138797
AA Change: I189T

PolyPhen 2 Score 0.959 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000115273
Gene: ENSMUSG00000069793
AA Change: I189T

Domain	Start	End	E-Value	Type
low complexity region	28	44	N/A	INTRINSIC
Pfam:AAA_4	205	344	3.8e-19	PFAM
Pfam:DUF2075	592	642	1.9e-7	PFAM

Meta Mutation Damage Score

0.3986

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

100% (60/60)

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aar2	T	C	2: 156,397,915 (GRCm39)	I309T	possibly damaging	Het
Abca12	A	C	1: 71,286,295 (GRCm39)	L2513*	probably null	Het
Abca13	G	C	11: 9,460,463 (GRCm39)	V4158L	probably benign	Het
Acaca	A	G	11: 84,254,562 (GRCm39)	T1880A	possibly damaging	Het
Arhgap5	C	T	12: 52,564,783 (GRCm39)	R585C	probably benign	Het
Arsk	A	C	13: 76,210,634 (GRCm39)	I471S	possibly damaging	Het
Asb7	T	C	7: 66,309,868 (GRCm39)	D116G	probably damaging	Het
Atad2	A	G	15: 57,998,322 (GRCm39)	S17P	probably benign	Het
Atf5	T	C	7: 44,464,562 (GRCm39)	E10G	probably damaging	Het
B3gntl1	G	T	11: 121,515,004 (GRCm39)	P255T	probably benign	Het
Cacna1s	A	G	1: 136,014,540 (GRCm39)	N649S	probably damaging	Het
Ccnc	A	G	4: 21,743,291 (GRCm39)	Y192C	probably damaging	Het
Cd28	A	G	1: 60,802,459 (GRCm39)	N126S	probably benign	Het
Cep57	A	G	9: 13,721,969 (GRCm39)	S360P	possibly damaging	Het
Ces1e	C	T	8: 93,941,703 (GRCm39)	V257I	probably benign	Het
Chd1	A	G	17: 15,969,660 (GRCm39)	K913R	probably benign	Het
Cluap1	A	T	16: 3,758,657 (GRCm39)	D373V	probably damaging	Het
Cnmd	T	C	14: 79,882,947 (GRCm39)	I160V	probably benign	Het
Col6a4	G	A	9: 105,897,994 (GRCm39)	P1686S	probably damaging	Het
Coro7	G	T	16: 4,486,615 (GRCm39)	A186E	probably benign	Het
Cuta	T	C	17: 27,158,431 (GRCm39)		probably benign	Het
Dnah2	G	A	11: 69,383,631 (GRCm39)	H1098Y	probably benign	Het
Duox1	T	A	2: 122,153,711 (GRCm39)	C345S	probably damaging	Het
Ephb4	T	A	5: 137,352,687 (GRCm39)	I90K	possibly damaging	Het
Erich3	T	A	3: 154,439,198 (GRCm39)	M280K	probably damaging	Het
Fcer2a	T	A	8: 3,740,335 (GRCm39)	H4L	probably benign	Het
Grk1	A	T	8: 13,455,316 (GRCm39)	I67F	probably damaging	Het
Grm8	A	C	6: 27,762,476 (GRCm39)	S250A	possibly damaging	Het
H2-Q6	A	G	17: 35,644,204 (GRCm39)	E62G	possibly damaging	Het
Inppl1	C	T	7: 101,482,144 (GRCm39)	R144H	probably damaging	Het
Itga3	G	T	11: 94,959,681 (GRCm39)	P33Q	probably benign	Het
Itgax	G	A	7: 127,739,604 (GRCm39)	S672N	probably damaging	Het
Itpk1	A	T	12: 102,540,324 (GRCm39)	V253E	possibly damaging	Het
Krt15	A	T	11: 100,026,386 (GRCm39)	V100E	possibly damaging	Het
Mrps7	T	C	11: 115,495,717 (GRCm39)	V85A	probably benign	Het
Muc2	T	C	7: 141,301,863 (GRCm39)	L427P		Het
Myef2	G	T	2: 124,952,537 (GRCm39)	Q185K	probably benign	Het
Or1e1b-ps1	G	T	11: 73,846,335 (GRCm39)	C273F	unknown	Het
Or4a76	T	A	2: 89,460,915 (GRCm39)	D109V	probably damaging	Het
Pcdh15	G	A	10: 74,289,897 (GRCm39)	M905I	possibly damaging	Het
Pgm5	C	T	19: 24,686,663 (GRCm39)	V515M	probably benign	Het
Pik3r1	A	G	13: 101,825,644 (GRCm39)	I381T	probably damaging	Het
Pla2g4f	A	G	2: 120,137,737 (GRCm39)	M341T	probably benign	Het
Prmt2	A	G	10: 76,056,912 (GRCm39)	F204L	probably benign	Het
Pwwp3a	T	A	10: 80,068,587 (GRCm39)	S244T	probably benign	Het
Rasa2	A	G	9: 96,493,500 (GRCm39)	V50A	unknown	Het
Scn7a	A	C	2: 66,505,876 (GRCm39)	I1671S	probably benign	Het
Sco2	G	A	15: 89,255,923 (GRCm39)	R244C	possibly damaging	Het
Skic3	A	T	13: 76,296,944 (GRCm39)	K1100N	probably benign	Het
Slfn1	A	G	11: 83,011,967 (GRCm39)	M28V	possibly damaging	Het
Svil	T	A	18: 5,056,109 (GRCm39)	S327R	probably benign	Het
Tcaf3	A	T	6: 42,573,776 (GRCm39)	N145K	probably benign	Het
Trarg1	G	A	11: 76,585,051 (GRCm39)	R147Q	unknown	Het
Trgv6	G	T	13: 19,374,814 (GRCm39)	G40W	possibly damaging	Het
Upp2	G	T	2: 58,661,586 (GRCm39)	V130F	possibly damaging	Het
Vnn3	G	A	10: 23,741,666 (GRCm39)	A324T	probably benign	Het
Wasf2	A	G	4: 132,912,412 (GRCm39)	E88G	unknown	Het
Zfp39	A	T	11: 58,780,933 (GRCm39)	C610S	probably damaging	Het

Other mutations in Slfn9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00900:Slfn9	APN	11	82,872,197 (GRCm39)	nonsense	probably null
IGL01340:Slfn9	APN	11	82,872,577 (GRCm39)	missense	probably benign	0.29
IGL01543:Slfn9	APN	11	82,878,775 (GRCm39)	missense	probably benign
IGL01735:Slfn9	APN	11	82,873,158 (GRCm39)	missense	probably damaging	1.00
IGL01778:Slfn9	APN	11	82,878,200 (GRCm39)	missense	probably damaging	0.98
IGL01863:Slfn9	APN	11	82,872,151 (GRCm39)	missense	probably benign	0.27
IGL01997:Slfn9	APN	11	82,878,503 (GRCm39)	missense	possibly damaging	0.80
IGL02380:Slfn9	APN	11	82,872,046 (GRCm39)	missense	probably benign	0.23
IGL02993:Slfn9	APN	11	82,872,022 (GRCm39)	missense	probably benign	0.18
R1463:Slfn9	UTSW	11	82,872,524 (GRCm39)	missense	possibly damaging	0.78
R1687:Slfn9	UTSW	11	82,872,983 (GRCm39)	missense	probably damaging	0.99
R1786:Slfn9	UTSW	11	82,872,133 (GRCm39)	missense	probably damaging	0.99
R1796:Slfn9	UTSW	11	82,872,781 (GRCm39)	missense	probably benign	0.00
R1870:Slfn9	UTSW	11	82,872,402 (GRCm39)	missense	probably benign
R1871:Slfn9	UTSW	11	82,872,402 (GRCm39)	missense	probably benign
R2004:Slfn9	UTSW	11	82,879,027 (GRCm39)	missense	probably benign	0.25
R2024:Slfn9	UTSW	11	82,872,507 (GRCm39)	missense	probably damaging	1.00
R2106:Slfn9	UTSW	11	82,878,506 (GRCm39)	missense	possibly damaging	0.89
R2140:Slfn9	UTSW	11	82,875,481 (GRCm39)	missense	possibly damaging	0.76
R3004:Slfn9	UTSW	11	82,872,590 (GRCm39)	missense	possibly damaging	0.94
R4293:Slfn9	UTSW	11	82,873,334 (GRCm39)	missense	probably benign	0.01
R4927:Slfn9	UTSW	11	82,872,216 (GRCm39)	missense	possibly damaging	0.47
R4950:Slfn9	UTSW	11	82,872,730 (GRCm39)	missense	probably benign
R5471:Slfn9	UTSW	11	82,873,613 (GRCm39)	missense	possibly damaging	0.85
R5543:Slfn9	UTSW	11	82,873,207 (GRCm39)	missense	probably damaging	1.00
R5576:Slfn9	UTSW	11	82,872,258 (GRCm39)	missense	probably benign
R5996:Slfn9	UTSW	11	82,878,310 (GRCm39)	missense	possibly damaging	0.67
R7272:Slfn9	UTSW	11	82,872,387 (GRCm39)	missense	probably benign	0.36
R7421:Slfn9	UTSW	11	82,872,197 (GRCm39)	nonsense	probably null
R7498:Slfn9	UTSW	11	82,873,013 (GRCm39)	missense	probably damaging	0.98
R7788:Slfn9	UTSW	11	82,873,467 (GRCm39)	missense	possibly damaging	0.85
R8286:Slfn9	UTSW	11	82,872,095 (GRCm39)	missense	probably damaging	0.99
R8304:Slfn9	UTSW	11	82,873,605 (GRCm39)	missense	probably benign	0.14
R8388:Slfn9	UTSW	11	82,878,112 (GRCm39)	missense	probably benign
R8678:Slfn9	UTSW	11	82,872,370 (GRCm39)	missense	probably benign	0.33
R8730:Slfn9	UTSW	11	82,878,194 (GRCm39)	missense	possibly damaging	0.80
R8914:Slfn9	UTSW	11	82,872,132 (GRCm39)	missense	probably damaging	0.99
R9050:Slfn9	UTSW	11	82,879,120 (GRCm39)	missense	probably benign	0.00
R9424:Slfn9	UTSW	11	82,878,211 (GRCm39)	missense	possibly damaging	0.75
R9576:Slfn9	UTSW	11	82,878,211 (GRCm39)	missense	possibly damaging	0.75
Z1176:Slfn9	UTSW	11	82,873,261 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- AACGTTGTCTTTTGGGCATC -3'
(R):5'- ATTTGCAGCCTGGGCACTTC -3'

Sequencing Primer
(F):5'- TCTTATCATCCACTCCAATGAAAAG -3'
(R):5'- GGCACTTCCCTGTACTGTCG -3'

Posted On

2019-10-07