Mutagenetix > Incidental Mutations

Incidental Mutation 'R7425:Sgk1'

575998

Institutional Source

Beutler Lab

Gene Symbol

Sgk1

Ensembl Gene

ENSMUSG00000019970

Gene Name

serum/glucocorticoid regulated kinase 1

Synonyms

Sgk, Sgk1

Accession Numbers

Ncbi RefSeq: NM_001161845.2, NM_001161847.2, NM_001161848.2, NM_001161849.2, NM_001161850.2, NM_011361.3; MGI:1340062

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7425 (G1)

Quality Score

176.009

Status

Not validated

Chromosome

Chromosomal Location

21882184-21999903 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 21994110 bp

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 16 (L16P)

Ref Sequence

ENSEMBL: ENSMUSP00000090343 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020145] [ENSMUST00000092673] [ENSMUST00000100036] [ENSMUST00000120509] [ENSMUST00000124350] [ENSMUST00000142174] [ENSMUST00000150089] [ENSMUST00000164659]

Predicted Effect

probably benign
Transcript: ENSMUST00000020145

SMART Domains

Protein: ENSMUSP00000020145
Gene: ENSMUSG00000019970

Domain	Start	End	E-Value	Type
Blast:S_TKc	36	72	4e-10	BLAST
low complexity region	73	80	N/A	INTRINSIC
S_TKc	98	355	6.15e-106	SMART
S_TK_X	356	425	2.51e-19	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000092673
AA Change: L16P

PolyPhen 2 Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000090343
Gene: ENSMUSG00000019970
AA Change: L16P

Domain	Start	End	E-Value	Type
low complexity region	7	20	N/A	INTRINSIC
Blast:S_TKc	50	86	5e-10	BLAST
low complexity region	87	94	N/A	INTRINSIC
S_TKc	112	369	6.15e-106	SMART
S_TK_X	370	439	2.51e-19	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000100036

SMART Domains

Protein: ENSMUSP00000097614
Gene: ENSMUSG00000019970

Domain	Start	End	E-Value	Type
Blast:S_TKc	22	58	5e-10	BLAST
low complexity region	59	66	N/A	INTRINSIC
S_TKc	84	341	6.15e-106	SMART
S_TK_X	342	411	2.51e-19	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000120509

SMART Domains

Protein: ENSMUSP00000114074
Gene: ENSMUSG00000019970

Domain	Start	End	E-Value	Type
Blast:S_TKc	129	165	1e-9	BLAST
low complexity region	166	173	N/A	INTRINSIC
S_TKc	191	448	6.15e-106	SMART
S_TK_X	449	518	2.51e-19	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000124203

Predicted Effect

probably benign
Transcript: ENSMUST00000124350

SMART Domains

Protein: ENSMUSP00000114691
Gene: ENSMUSG00000019970

Domain	Start	End	E-Value	Type
Blast:S_TKc	9	45	2e-12	BLAST
low complexity region	46	53	N/A	INTRINSIC
Pfam:Pkinase	71	266	3.2e-62	PFAM
Pfam:Pkinase_Tyr	71	266	4.4e-34	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000142174

SMART Domains

Protein: ENSMUSP00000120882
Gene: ENSMUSG00000019970

Domain	Start	End	E-Value	Type
Blast:S_TKc	9	45	3e-14	BLAST
PDB:3HDN\|A	33	82	7e-18	PDB
SCOP:d1koba_	43	82	4e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000150089

SMART Domains

Protein: ENSMUSP00000115073
Gene: ENSMUSG00000019970

Domain	Start	End	E-Value	Type
Blast:S_TKc	22	58	4e-14	BLAST
PDB:3HDN\|A	46	89	3e-13	PDB

Predicted Effect

probably benign
Transcript: ENSMUST00000164659

SMART Domains

Protein: ENSMUSP00000128873
Gene: ENSMUSG00000019970

Domain	Start	End	E-Value	Type
Blast:S_TKc	9	45	5e-10	BLAST
low complexity region	46	53	N/A	INTRINSIC
S_TKc	71	328	6.15e-106	SMART
S_TK_X	329	398	2.51e-19	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

MGI Phenotype

Strain: 3846797; 2445418
FUNCTION: This gene encodes a serine/threonine protein kinase that plays an important role in cellular stress response. This kinase activates certain potassium, sodium, and chloride channels, suggesting an involvement in the regulation of processes such as cell survival, neuronal excitability, and renal sodium excretion. This enzyme is activated by protein phosphorylation and degraded via the ubiquitination and proteasome pathway. Multiple transcript variants encoding different isoforms have been found for this gene. A pseudogene of this gene was identified on chromosome 12. [provided by RefSeq, Sep 2009]
PHENOTYPE: Mice homozygous for a disruption in this gene display an essentially normal phenotype. Sodium retention is compromised on a low salt diet. [provided by MGI curators]

Allele List at MGI

All alleles(143) : Targeted(6) Gene trapped(137)

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	A	G	3: 138,065,695	E215G	probably benign	Het
4932438A13Rik	T	A	3: 36,948,341	H1478Q	probably benign	Het
4932438A13Rik	A	T	3: 36,983,394	H2448L	probably benign	Het
Adam8	T	A	7: 139,992,481		probably benign	Het
Ankrd35	A	G	3: 96,684,788	S797G	not run	Het
Anxa3	T	A	5: 96,834,821	H259Q	probably benign	Het
Ap3d1	T	A	10: 80,721,592	Q302L	probably damaging	Het
Atg2a	T	C	19: 6,255,652	V1294A	probably benign	Het
Atp13a5	G	A	16: 29,297,460	Q613*	probably null	Het
Bmpr2	T	G	1: 59,867,351	N534K	probably benign	Het
C1qbp	T	C	11: 70,978,246		probably null	Het
C1qbp	G	T	11: 70,978,247		probably null	Het
C1ql3	T	G	2: 13,010,418	K144Q	possibly damaging	Het
C3	T	C	17: 57,204,039	M1656V	possibly damaging	Het
Cand1	A	T	10: 119,216,243	Y252N	probably benign	Het
Capn13	T	C	17: 73,318,058	I632M	probably benign	Het
Catsperb	A	G	12: 101,591,498	E776G	probably damaging	Het
Ccnl1	A	T	3: 65,948,758	V242D	probably damaging	Het
Cd68	T	C	11: 69,665,112	D200G	probably benign	Het
Cela3a	T	C	4: 137,405,588	N118D	probably benign	Het
Celsr2	A	G	3: 108,402,457	C1609R	probably damaging	Het
Cep85l	G	C	10: 53,301,570	Q458E	probably damaging	Het
Cnga1	T	G	5: 72,609,525	E190D	probably benign	Het
Cntnap3	G	A	13: 64,758,252	R847C	probably damaging	Het
Cntrob	G	A	11: 69,314,734	Q425*	probably null	Het
Commd9	G	A	2: 101,899,900	W128*	probably null	Het
Csnk1a1	C	T	18: 61,585,259	S352L	unknown	Het
Dact2	A	G	17: 14,196,331	S536P	probably damaging	Het
Ddx25	A	G	9: 35,554,586	I113T	probably benign	Het
Dscam	T	A	16: 96,629,398	D1630V	probably damaging	Het
Fndc7	A	C	3: 108,876,659	F211L	probably benign	Het
Fryl	T	C	5: 73,104,748	T559A	probably damaging	Het
Hpx	C	A	7: 105,591,861	D402Y	probably damaging	Het
Ints13	A	G	6: 146,574,700		probably null	Het
Ipcef1	T	C	10: 6,956,066	K76E	probably damaging	Het
Kcnb2	A	C	1: 15,709,807	Q301P	probably damaging	Het
Lamp3	C	T	16: 19,699,612		probably null	Het
Lmod2	A	T	6: 24,603,476	H150L	probably benign	Het
Lrch3	T	C	16: 33,005,707	F718S	probably damaging	Het
Mms22l	T	C	4: 24,596,287	V1082A	probably benign	Het
Nbas	G	T	12: 13,469,880	V1598L	probably damaging	Het
Nrxn3	C	T	12: 89,513,100	R671*	probably null	Het
Olfr1215	A	T	2: 89,002,200	F29L		Het
Olfr1441	A	C	19: 12,422,840	H177P	probably damaging	Het
Olfr214	A	T	6: 116,556,437	E4V	possibly damaging	Het
Olfr48	A	G	2: 89,844,445	L176P	probably damaging	Het
Olfr671	A	T	7: 104,975,061	L312*	probably null	Het
Pcdhga6	T	A	18: 37,708,566	N446K	probably damaging	Het
Phlpp1	A	T	1: 106,392,573	I1433F	probably benign	Het
Pla2g6	G	A	15: 79,308,733	R245C	probably damaging	Het
Rgl3	G	A	9: 21,976,827	Q464*	probably null	Het
Ryr2	T	C	13: 11,705,644	D2706G	probably benign	Het
Sbf2	G	A	7: 110,375,777	Q718*	probably null	Het
Sdad1	T	C	5: 92,300,121	T252A	probably benign	Het
Slc38a8	A	G	8: 119,485,588	S339P	possibly damaging	Het
Slc44a4	T	C	17: 34,921,691	S287P	possibly damaging	Het
Syne1	T	C	10: 5,425,760	I111V	probably damaging	Het
Synm	A	C	7: 67,733,446	S1489R	probably damaging	Het
Tfb2m	A	G	1: 179,537,704	F232L	probably benign	Het
Traf3	A	T	12: 111,260,661	K328*	probably null	Het
Trim38	C	A	13: 23,788,382	Q229K	probably benign	Het
Vcan	A	G	13: 89,689,832	I2531T	probably damaging	Het
Virma	T	A	4: 11,546,211	I1683N	possibly damaging	Het
Vmn1r18	A	T	6: 57,390,566	M1K	probably null	Het
Vmn2r87	T	C	10: 130,478,892	N275S	probably damaging	Het
Vps13a	T	A	19: 16,723,702	H701L	probably benign	Het
Vrk3	T	A	7: 44,770,924		probably null	Het
Zfp993	T	A	4: 146,657,641	S141T	possibly damaging	Het

Other mutations in Sgk1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02318:Sgk1	APN	10	21995541	missense	probably damaging	1.00
IGL02670:Sgk1	APN	10	21928546	missense	probably benign
IGL03220:Sgk1	APN	10	21997391	missense	probably null	1.00
R0010:Sgk1	UTSW	10	21997438	critical splice donor site	probably null
R0010:Sgk1	UTSW	10	21997438	critical splice donor site	probably null
R0467:Sgk1	UTSW	10	21996358	splice site	probably benign
R0479:Sgk1	UTSW	10	21996310	missense	probably benign	0.00
R0650:Sgk1	UTSW	10	21882657	missense	probably damaging	0.98
R0652:Sgk1	UTSW	10	21882657	missense	probably damaging	0.98
R0688:Sgk1	UTSW	10	21998160	missense	probably benign
R0990:Sgk1	UTSW	10	21997086	missense	probably damaging	1.00
R1769:Sgk1	UTSW	10	21997108	splice site	probably benign
R2009:Sgk1	UTSW	10	21996601	missense	probably damaging	1.00
R2218:Sgk1	UTSW	10	21996601	missense	probably damaging	1.00
R2314:Sgk1	UTSW	10	21996601	missense	probably damaging	1.00
R2909:Sgk1	UTSW	10	21994816	missense	probably benign
R2915:Sgk1	UTSW	10	21996601	missense	probably damaging	1.00
R3176:Sgk1	UTSW	10	21996601	missense	probably damaging	1.00
R3177:Sgk1	UTSW	10	21996601	missense	probably damaging	1.00
R3276:Sgk1	UTSW	10	21996601	missense	probably damaging	1.00
R3277:Sgk1	UTSW	10	21996601	missense	probably damaging	1.00
R3802:Sgk1	UTSW	10	21997412	missense	probably damaging	1.00
R5974:Sgk1	UTSW	10	21996249	missense	probably damaging	1.00
R6943:Sgk1	UTSW	10	21882694	missense	probably damaging	0.99
R7360:Sgk1	UTSW	10	21994073	missense	probably benign	0.01
R7665:Sgk1	UTSW	10	21996662	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCACAAGGGCCATTTGTTTG -3'
(R):5'- GAGAGCCTCGGTGATTTTCC -3'

Sequencing Primer
(F):5'- CACAAGGGCCATTTGTTTGTTTTG -3'
(R):5'- GAGAGCCTCGGTGATTTTCCATTTC -3'

Posted On

2019-10-07