Mutagenetix > Incidental Mutation

Incidental Mutation 'R0628:Tex9'

57707

Institutional Source

Beutler Lab

Gene Symbol

Tex9

Ensembl Gene

ENSMUSG00000090626

Gene Name

testis expressed gene 9

Synonyms

tsec-1

MMRRC Submission

038817-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.072) question?

Stock #

R0628 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

72357676-72399494 bp(-) (GRCm39)

Type of Mutation

start codon destroyed

DNA Base Change (assembly)

A to T at 72399233 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 1 (M1K)

Ref Sequence

ENSEMBL: ENSMUSP00000139212 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000085358] [ENSMUST00000183574] [ENSMUST00000183856] [ENSMUST00000184125] [ENSMUST00000184312] [ENSMUST00000184557] [ENSMUST00000185151] [ENSMUST00000184831]

AlphaFold

Q9D845

Predicted Effect

probably benign
Transcript: ENSMUST00000085358

SMART Domains

Protein: ENSMUSP00000082467
Gene: ENSMUSG00000090626

Domain	Start	End	E-Value	Type
coiled coil region	23	63	N/A	INTRINSIC
coiled coil region	186	344	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000183428

Predicted Effect

probably null
Transcript: ENSMUST00000183574
AA Change: M1K

PolyPhen 2 Score 0.836 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000139386
Gene: ENSMUSG00000090626
AA Change: M1K

Domain	Start	End	E-Value	Type
coiled coil region	23	63	N/A	INTRINSIC
coiled coil region	186	208	N/A	INTRINSIC
coiled coil region	231	286	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000183856
AA Change: M1K

PolyPhen 2 Score 0.836 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000139247
Gene: ENSMUSG00000090626
AA Change: M1K

Domain	Start	End	E-Value	Type
coiled coil region	23	63	N/A	INTRINSIC
coiled coil region	186	328	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000184066

Predicted Effect

probably null
Transcript: ENSMUST00000184125
AA Change: M1K

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000139026
Gene: ENSMUSG00000090626
AA Change: M1K

Domain	Start	End	E-Value	Type
coiled coil region	23	63	N/A	INTRINSIC
coiled coil region	186	344	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000184312
AA Change: M1K

PolyPhen 2 Score 0.041 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000138844
Gene: ENSMUSG00000090626
AA Change: M1K

Domain	Start	End	E-Value	Type
coiled coil region	23	63	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000184557
AA Change: M1K

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000139212
Gene: ENSMUSG00000090626
AA Change: M1K

Domain	Start	End	E-Value	Type
coiled coil region	23	63	N/A	INTRINSIC
coiled coil region	186	280	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000185106

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000184624

Predicted Effect

probably null
Transcript: ENSMUST00000185151

Predicted Effect

probably benign
Transcript: ENSMUST00000184831

SMART Domains

Protein: ENSMUSP00000138999
Gene: ENSMUSG00000090626

Domain	Start	End	E-Value	Type
coiled coil region	1	159	N/A	INTRINSIC

Meta Mutation Damage Score

0.9441

Coding Region Coverage

1x: 99.3%
3x: 98.8%
10x: 97.3%
20x: 94.6%

Validation Efficiency

98% (58/59)

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Alpk2	A	C	18: 65,440,367 (GRCm39)	V809G	possibly damaging	Het
Bank1	T	A	3: 135,772,151 (GRCm39)	D493V	probably damaging	Het
Camk2d	T	C	3: 126,604,273 (GRCm39)		probably benign	Het
Ccdc17	T	A	4: 116,455,745 (GRCm39)	L292H	probably damaging	Het
Ccdc7b	A	G	8: 129,837,498 (GRCm39)		probably benign	Het
Cd34	C	A	1: 194,641,525 (GRCm39)	T317K	probably damaging	Het
Col6a5	C	G	9: 105,789,649 (GRCm39)		probably null	Het
Colgalt2	G	T	1: 152,384,312 (GRCm39)	A551S	possibly damaging	Het
Copa	T	C	1: 171,918,592 (GRCm39)		probably benign	Het
Coq7	T	C	7: 118,128,867 (GRCm39)	D56G	probably damaging	Het
Dlg4	C	T	11: 69,922,610 (GRCm39)	T201I	probably damaging	Het
Dnah7a	T	A	1: 53,536,264 (GRCm39)	D2593V	probably benign	Het
Ect2l	T	A	10: 18,018,788 (GRCm39)	E536V	probably damaging	Het
Emilin3	A	G	2: 160,752,799 (GRCm39)		probably benign	Het
Eml2	T	C	7: 18,935,479 (GRCm39)		probably benign	Het
Fam135b	C	T	15: 71,320,505 (GRCm39)		probably benign	Het
Fhip2b	T	C	14: 70,825,161 (GRCm39)	T392A	possibly damaging	Het
Gart	C	T	16: 91,430,790 (GRCm39)	R424H	probably benign	Het
Gramd1a	A	G	7: 30,842,049 (GRCm39)	L80P	probably damaging	Het
Herc1	A	G	9: 66,358,163 (GRCm39)	K2415E	probably benign	Het
Ica1	C	T	6: 8,644,256 (GRCm39)		probably benign	Het
Idi2l	T	A	13: 8,990,958 (GRCm39)		probably benign	Het
Iyd	A	T	10: 3,497,127 (GRCm39)	M161L	probably damaging	Het
Kdm5a	T	C	6: 120,392,200 (GRCm39)	L974S	probably damaging	Het
Kif1a	T	C	1: 92,947,605 (GRCm39)	D1619G	probably damaging	Het
Lypd8	C	T	11: 58,275,499 (GRCm39)	T78M	probably damaging	Het
Marchf10	T	A	11: 105,280,986 (GRCm39)	H433L	probably benign	Het
Mbp	A	G	18: 82,572,742 (GRCm39)	Y13C	probably damaging	Het
Mertk	A	T	2: 128,580,233 (GRCm39)	N229I	probably damaging	Het
Msrb2	T	A	2: 19,398,091 (GRCm39)	D116E	probably damaging	Het
Nfix	G	A	8: 85,453,155 (GRCm39)	R300C	probably damaging	Het
Otoa	G	A	7: 120,744,873 (GRCm39)		probably benign	Het
Pclo	A	G	5: 14,719,552 (GRCm39)	T1230A	unknown	Het
Polrmt	T	C	10: 79,574,979 (GRCm39)	T851A	possibly damaging	Het
Prpf6	C	T	2: 181,277,841 (GRCm39)	P401L	probably damaging	Het
Rasgrp4	A	G	7: 28,839,635 (GRCm39)		probably benign	Het
Rc3h2	A	T	2: 37,272,064 (GRCm39)		probably benign	Het
Reps1	A	G	10: 17,996,841 (GRCm39)	T588A	probably damaging	Het
Rtel1	A	C	2: 180,993,674 (GRCm39)	S782R	probably benign	Het
Sacm1l	A	G	9: 123,378,060 (GRCm39)		probably benign	Het
Skic3	G	C	13: 76,298,848 (GRCm39)	V1185L	possibly damaging	Het
Skint5	A	T	4: 113,588,266 (GRCm39)	L728*	probably null	Het
Slc9b2	T	A	3: 135,029,536 (GRCm39)		probably benign	Het
Snapc3	A	T	4: 83,368,397 (GRCm39)	H298L	probably benign	Het
Trappc13	C	T	13: 104,291,424 (GRCm39)		probably benign	Het
Usp3	C	T	9: 66,425,726 (GRCm39)	R467H	probably benign	Het
Vmn2r11	T	A	5: 109,195,597 (GRCm39)	L576F	possibly damaging	Het
Wnk4	T	C	11: 101,165,849 (GRCm39)	F792S	probably benign	Het
Zfp1007	T	C	5: 109,826,442 (GRCm39)		probably null	Het
Zfp280d	T	C	9: 72,269,230 (GRCm39)	V764A	probably benign	Het
Zfp69	G	A	4: 120,806,622 (GRCm39)	Q4*	probably null	Het
Zfp692	T	G	11: 58,200,449 (GRCm39)	L206R	probably damaging	Het
Zic2	CCCACCACCACCATCACCACCACCACC	CCCACCATCACCACCACCACC	14: 122,713,776 (GRCm39)		probably benign	Het
Zic4	T	A	9: 91,266,170 (GRCm39)	Y264*	probably null	Het
Zic4	T	A	9: 91,266,172 (GRCm39)	M272K	probably benign	Het
Zscan4b	A	T	7: 10,635,390 (GRCm39)	N284K	probably damaging	Het

Other mutations in Tex9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00467:Tex9	APN	9	72,385,117 (GRCm39)	missense	probably benign	0.32
IGL01109:Tex9	APN	9	72,395,349 (GRCm39)	missense	probably damaging	1.00
IGL01373:Tex9	APN	9	72,388,036 (GRCm39)	missense	possibly damaging	0.78
IGL02496:Tex9	APN	9	72,389,774 (GRCm39)	missense	probably benign	0.25
IGL02569:Tex9	APN	9	72,385,645 (GRCm39)	missense	probably damaging	1.00
barbacoa	UTSW	9	72,394,060 (GRCm39)	critical splice donor site	probably null
R0068:Tex9	UTSW	9	72,394,051 (GRCm39)	splice site	probably benign
R0481:Tex9	UTSW	9	72,385,678 (GRCm39)	nonsense	probably null
R0962:Tex9	UTSW	9	72,391,374 (GRCm39)	missense	probably benign
R2212:Tex9	UTSW	9	72,385,040 (GRCm39)	missense	possibly damaging	0.89
R3412:Tex9	UTSW	9	72,385,040 (GRCm39)	missense	possibly damaging	0.89
R4373:Tex9	UTSW	9	72,387,877 (GRCm39)	critical splice donor site	probably null
R4972:Tex9	UTSW	9	72,385,620 (GRCm39)	critical splice donor site	probably null
R5323:Tex9	UTSW	9	72,385,187 (GRCm39)	missense	probably damaging	1.00
R5401:Tex9	UTSW	9	72,394,060 (GRCm39)	critical splice donor site	probably null
R6149:Tex9	UTSW	9	72,369,282 (GRCm39)	splice site	probably null
R7396:Tex9	UTSW	9	72,388,072 (GRCm39)	splice site	probably null
R7412:Tex9	UTSW	9	72,394,060 (GRCm39)	critical splice donor site	probably null
R8198:Tex9	UTSW	9	72,387,940 (GRCm39)	start gained	probably benign
R8745:Tex9	UTSW	9	72,389,778 (GRCm39)	missense	probably benign	0.00
R9767:Tex9	UTSW	9	72,368,518 (GRCm39)	nonsense	probably null
X0024:Tex9	UTSW	9	72,387,956 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACCGCCCTGGAAATATGAGGGATG -3'
(R):5'- GCTAGTCTCAATGGGTGAAGGGAAC -3'

Sequencing Primer
(F):5'- ATATGAGGGATGCTCACTTGTACTC -3'
(R):5'- GAACCCAGGAGCTGCTG -3'

Posted On

2013-07-11