Mutagenetix > Incidental Mutation

Incidental Mutation 'R7443:Lsm14a'

577090

Institutional Source

Beutler Lab

Gene Symbol

Lsm14a

Ensembl Gene

ENSMUSG00000066568

Gene Name

LSM14A mRNA processing body assembly factor

Synonyms

2700023B17Rik, Tral

MMRRC Submission

045519-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.854) question?

Stock #

R7443 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

34043569-34089134 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 34053263 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 263 (V263A)

Ref Sequence

ENSEMBL: ENSMUSP00000082723 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000085585] [ENSMUST00000133046] [ENSMUST00000155256] [ENSMUST00000206388]

AlphaFold

Q8K2F8

Predicted Effect

probably benign
Transcript: ENSMUST00000085585
AA Change: V263A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000082723
Gene: ENSMUSG00000066568
AA Change: V263A

Domain	Start	End	E-Value	Type
LSM14	1	98	1.15e-57	SMART
low complexity region	129	140	N/A	INTRINSIC
low complexity region	268	287	N/A	INTRINSIC
FDF	289	399	6.14e-35	SMART
low complexity region	403	428	N/A	INTRINSIC
low complexity region	434	450	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000133046
AA Change: V168A

SMART Domains

Protein: ENSMUSP00000119461
Gene: ENSMUSG00000066568
AA Change: V168A

Domain	Start	End	E-Value	Type
LSM14	1	62	1.33e-12	SMART
low complexity region	93	104	N/A	INTRINSIC

Predicted Effect

SMART Domains

Protein: ENSMUSP00000118766
Gene: ENSMUSG00000066568
AA Change: V204A

Domain	Start	End	E-Value	Type
LSM14	1	98	1.15e-57	SMART
low complexity region	129	140	N/A	INTRINSIC
low complexity region	209	228	N/A	INTRINSIC
Pfam:FDF	230	287	7.5e-13	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000205519

Predicted Effect

probably benign
Transcript: ENSMUST00000206388

Predicted Effect

probably benign
Transcript: ENSMUST00000206830

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Sm-like proteins were identified in a variety of organisms based on sequence homology with the Sm protein family (see SNRPD2; 601061). Sm-like proteins contain the Sm sequence motif, which consists of 2 regions separated by a linker of variable length that folds as a loop. The Sm-like proteins are thought to form a stable heteromer present in tri-snRNP particles, which are important for pre-mRNA splicing.[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abl2	T	C	1: 156,452,951 (GRCm39)	I162T	probably damaging	Het
Acaca	G	A	11: 84,206,619 (GRCm39)	S1493N	probably benign	Het
Arf2	T	A	11: 103,859,976 (GRCm39)	M18K	probably benign	Het
Bag5	A	G	12: 111,677,161 (GRCm39)	S221P	probably damaging	Het
Bcr	T	C	10: 74,978,968 (GRCm39)		probably null	Het
Btg2	T	A	1: 134,005,433 (GRCm39)	K51*	probably null	Het
Chrne	A	G	11: 70,509,092 (GRCm39)	V130A	probably benign	Het
Cracd	T	C	5: 77,004,485 (GRCm39)	V282A	unknown	Het
Cubn	T	A	2: 13,460,320 (GRCm39)	D714V	probably damaging	Het
Cyp4a29	A	T	4: 115,105,756 (GRCm39)	I153F	probably damaging	Het
Dph7	C	A	2: 24,852,505 (GRCm39)	H5Q	probably benign	Het
Epha6	T	C	16: 59,595,988 (GRCm39)	N901S	possibly damaging	Het
Exosc9	C	A	3: 36,607,990 (GRCm39)	P66Q	probably damaging	Het
Foxn3	T	C	12: 99,355,038 (GRCm39)	D42G	possibly damaging	Het
Gbp11	A	G	5: 105,478,816 (GRCm39)		probably null	Het
Gm3264	A	T	14: 16,058,304 (GRCm39)	Y37F	probably damaging	Het
H2-M10.2	T	A	17: 36,596,945 (GRCm39)	I44F	probably benign	Het
Hemgn	A	T	4: 46,396,145 (GRCm39)	F364I	probably damaging	Het
Hnf4a	A	G	2: 163,400,932 (GRCm39)	I184V	probably benign	Het
Ighe	G	T	12: 113,235,785 (GRCm39)	C180*	probably null	Het
Iigp1c	A	T	18: 60,379,122 (GRCm39)	N219I	probably benign	Het
Klk1b22	T	A	7: 43,765,534 (GRCm39)	I162K	probably benign	Het
Lmo3	C	T	6: 138,354,220 (GRCm39)	A104T	probably damaging	Het
Ltbp1	T	C	17: 75,671,432 (GRCm39)	Y1538H	probably damaging	Het
Ly6g6g	T	C	15: 74,647,249 (GRCm39)	E32G		Het
Map9	A	G	3: 82,278,663 (GRCm39)	E221G	possibly damaging	Het
Mccc2	G	A	13: 100,130,144 (GRCm39)	A71V	possibly damaging	Het
Mdc1	T	A	17: 36,161,712 (GRCm39)	V875E	probably damaging	Het
Mier2	A	T	10: 79,376,289 (GRCm39)	I212N	unknown	Het
Mitd1	T	C	1: 37,920,117 (GRCm39)	T164A	probably benign	Het
Myh1	T	C	11: 67,111,331 (GRCm39)	I1590T	probably benign	Het
Mylk2	T	G	2: 152,753,346 (GRCm39)		probably benign	Het
Ncapg	T	A	5: 45,829,652 (GRCm39)	V118E	probably benign	Het
Nynrin	G	A	14: 56,108,873 (GRCm39)	V1327I	probably benign	Het
Oas1c	C	A	5: 120,943,484 (GRCm39)	K218N	probably damaging	Het
Or11g24	A	G	14: 50,662,507 (GRCm39)	D177G	probably damaging	Het
Or13a18	A	G	7: 140,190,961 (GRCm39)	N286S	probably damaging	Het
Or1e23	A	T	11: 73,407,674 (GRCm39)	V117D	possibly damaging	Het
Or4a80	T	A	2: 89,582,285 (GRCm39)	M296L	probably benign	Het
Or5g26	T	A	2: 85,493,912 (GRCm39)	I289F	probably damaging	Het
Or5h17	T	A	16: 58,820,353 (GRCm39)	F102I	probably damaging	Het
Otoa	A	T	7: 120,731,633 (GRCm39)	M618L	probably benign	Het
P3r3urf	G	A	4: 116,030,664 (GRCm39)	G23R	probably benign	Het
Plcg2	A	T	8: 118,231,028 (GRCm39)	T37S	probably benign	Het
Plekhg4	T	C	8: 106,107,499 (GRCm39)	L1010P	probably damaging	Het
Plxnb1	T	C	9: 108,943,675 (GRCm39)	F1921L	probably damaging	Het
Prss47	T	A	13: 65,197,303 (GRCm39)	K144N	probably damaging	Het
Rapgef2	T	C	3: 78,988,531 (GRCm39)	K953E	probably damaging	Het
Rasip1	T	A	7: 45,288,148 (GRCm39)	I909N	probably damaging	Het
Rps5	A	G	7: 12,656,922 (GRCm39)	T8A	probably benign	Het
Rsbn1l	T	C	5: 21,132,621 (GRCm39)	K213E	possibly damaging	Het
Serpinb5	T	C	1: 106,809,700 (GRCm39)	F369L	probably benign	Het
Slc4a5	T	C	6: 83,241,297 (GRCm39)	V306A	probably benign	Het
Sox13	T	C	1: 133,312,369 (GRCm39)	Y465C	probably damaging	Het
Sox13	C	A	1: 133,312,311 (GRCm39)	K484N	probably damaging	Het
Stx3	A	G	19: 11,769,208 (GRCm39)	I39T	possibly damaging	Het
Tbc1d5	T	C	17: 51,273,763 (GRCm39)	Y116C	probably damaging	Het
Tcp11l1	T	A	2: 104,514,480 (GRCm39)	Q429L	probably benign	Het
Tns3	G	A	11: 8,401,442 (GRCm39)	T952I	probably benign	Het
Trib3	T	C	2: 152,181,692 (GRCm39)	H176R	possibly damaging	Het
Trim12a	A	G	7: 103,950,049 (GRCm39)	Y297H	probably damaging	Het
Unc13a	A	G	8: 72,083,603 (GRCm39)	V1577A	probably damaging	Het
Vezf1	C	A	11: 87,965,489 (GRCm39)	P244T	probably damaging	Het
Vmn1r121	T	A	7: 20,831,945 (GRCm39)	D165V	probably damaging	Het
Vmn2r117	T	A	17: 23,679,107 (GRCm39)	I706F	probably benign	Het
Vmn2r117	C	T	17: 23,679,319 (GRCm39)	C635Y	probably damaging	Het
Vmn2r13	T	A	5: 109,339,909 (GRCm39)	H22L	probably benign	Het
Vmn2r87	A	T	10: 130,308,588 (GRCm39)	M550K	probably damaging	Het
Wdr6	A	G	9: 108,451,489 (GRCm39)	L798P	probably damaging	Het
Wtap	C	T	17: 13,199,821 (GRCm39)	G54D	probably benign	Het
Zfp827	A	G	8: 79,917,047 (GRCm39)	S541G		Het
Zkscan3	A	T	13: 21,572,608 (GRCm39)	Y341*	probably null	Het

Other mutations in Lsm14a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01564:Lsm14a	APN	7	34,088,780 (GRCm39)	intron	probably benign
IGL02259:Lsm14a	APN	7	34,070,558 (GRCm39)	missense	probably damaging	1.00
IGL02940:Lsm14a	APN	7	34,070,596 (GRCm39)	nonsense	probably null
baluchistan	UTSW	7	34,052,826 (GRCm39)	nonsense	probably null
beast	UTSW	7	34,074,799 (GRCm39)	missense	probably damaging	1.00
R0234:Lsm14a	UTSW	7	34,065,042 (GRCm39)	missense	probably damaging	1.00
R0234:Lsm14a	UTSW	7	34,065,042 (GRCm39)	missense	probably damaging	1.00
R0826:Lsm14a	UTSW	7	34,070,470 (GRCm39)	splice site	probably benign
R1344:Lsm14a	UTSW	7	34,052,982 (GRCm39)	missense	probably damaging	1.00
R1641:Lsm14a	UTSW	7	34,050,799 (GRCm39)	missense	probably damaging	0.99
R1667:Lsm14a	UTSW	7	34,065,079 (GRCm39)	missense	possibly damaging	0.93
R2135:Lsm14a	UTSW	7	34,070,609 (GRCm39)	missense	probably damaging	1.00
R2331:Lsm14a	UTSW	7	34,056,915 (GRCm39)	missense	probably benign
R3709:Lsm14a	UTSW	7	34,053,204 (GRCm39)	missense	probably damaging	0.99
R3710:Lsm14a	UTSW	7	34,053,204 (GRCm39)	missense	probably damaging	0.99
R4304:Lsm14a	UTSW	7	34,056,858 (GRCm39)	critical splice donor site	probably null
R4998:Lsm14a	UTSW	7	34,074,799 (GRCm39)	missense	probably damaging	1.00
R5304:Lsm14a	UTSW	7	34,053,154 (GRCm39)	missense	possibly damaging	0.58
R5383:Lsm14a	UTSW	7	34,088,789 (GRCm39)	missense	possibly damaging	0.48
R5639:Lsm14a	UTSW	7	34,052,935 (GRCm39)	missense	probably damaging	1.00
R6370:Lsm14a	UTSW	7	34,056,906 (GRCm39)	missense	probably benign	0.17
R7559:Lsm14a	UTSW	7	34,052,826 (GRCm39)	nonsense	probably null
R7812:Lsm14a	UTSW	7	34,088,301 (GRCm39)	intron	probably benign
R8115:Lsm14a	UTSW	7	34,074,662 (GRCm39)	missense	probably benign	0.21
R9273:Lsm14a	UTSW	7	34,088,225 (GRCm39)	intron	probably benign
R9729:Lsm14a	UTSW	7	34,088,898 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCACTGTTCTGAGTGTCGAC -3'
(R):5'- GAACTCAGAAATCCGCCTGC -3'

Sequencing Primer
(F):5'- ACATGCAAGTTAAGACTTTACACATC -3'
(R):5'- AGAAATCCGCCTGCCTCTG -3'

Posted On

2019-10-07