Mutagenetix > Incidental Mutation

Incidental Mutation 'R7445:Tigd4'

577209

Institutional Source

Beutler Lab

Gene Symbol

Tigd4

Ensembl Gene

ENSMUSG00000047819

Gene Name

tigger transposable element derived 4

Synonyms

Tigd4, C130063O11Rik

MMRRC Submission

045521-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.145) question?

Stock #

R7445 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

84593574-84597032 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 84595164 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Threonine at position 463 (A463T)

Ref Sequence

ENSEMBL: ENSMUSP00000052320 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000062623] [ENSMUST00000154148]

AlphaFold

Q8BUZ3

Predicted Effect

probably benign
Transcript: ENSMUST00000062623
AA Change: A463T

PolyPhen 2 Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000052320
Gene: ENSMUSG00000047819
AA Change: A463T

Domain	Start	End	E-Value	Type
Pfam:CENP-B_N	15	67	9e-14	PFAM
CENPB	81	146	5.52e-16	SMART
Pfam:DDE_1	211	375	4.9e-39	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000154148

SMART Domains

Protein: ENSMUSP00000116393
Gene: ENSMUSG00000102805

Domain	Start	End	E-Value	Type
Arfaptin	1	227	7.15e-121	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

100% (67/67)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the tigger subfamily of the pogo superfamily of DNA-mediated transposons in humans. These proteins are related to DNA transposons found in fungi and nematodes, and more distantly to the Tc1 and mariner transposases. They are also very similar to the major mammalian centromere protein B. The exact function of this gene is not known. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610040J01Rik	T	A	5: 63,898,619	S233T	probably damaging	Het
1700034E13Rik	T	A	18: 52,660,481	C29S	probably damaging	Het
1700061G19Rik	G	A	17: 56,882,973	R333Q	possibly damaging	Het
9130409I23Rik	A	G	1: 181,055,012	N113S	possibly damaging	Het
Ank3	A	G	10: 69,992,124	T2208A		Het
Ap4s1	T	C	12: 51,738,641	L132P	probably damaging	Het
Ascl4	C	T	10: 85,928,500	R4C	probably benign	Het
Brd7	A	T	8: 88,361,708	Y18N	probably damaging	Het
Cacna2d3	A	G	14: 29,058,618	S648P	possibly damaging	Het
Camta1	C	T	4: 151,144,291	E695K	possibly damaging	Het
Ccdc28b	A	G	4: 129,622,607	F53L	probably benign	Het
Chaf1a	A	G	17: 56,062,170	D467G	possibly damaging	Het
Cnnm1	G	A	19: 43,440,821	R126H	possibly damaging	Het
Cog5	T	G	12: 31,919,672	S730R	possibly damaging	Het
Col11a1	A	T	3: 114,193,929	E1374D	unknown	Het
Csmd1	A	G	8: 16,158,254	I1229T	possibly damaging	Het
Dnajc30	T	C	5: 135,064,378	L43P	probably damaging	Het
Eif3f	C	T	7: 108,934,658	T76M	unknown	Het
Ermap	G	A	4: 119,188,710	T42I	unknown	Het
Gpd1l	C	T	9: 114,920,674	G25S	probably damaging	Het
Heatr1	G	T	13: 12,431,038	W1632L	possibly damaging	Het
Ice1	T	C	13: 70,596,167	D29G		Het
Ipo8	T	C	6: 148,789,817	D685G	probably benign	Het
Klra10	T	C	6: 130,275,856	T152A	probably benign	Het
Lmntd1	T	A	6: 145,429,967	S82C	probably damaging	Het
Maip1	T	C	1: 57,407,031	S87P	possibly damaging	Het
Mapkapk2	A	G	1: 131,097,519	S3P	unknown	Het
Mei4	A	G	9: 81,890,239	Y35C	possibly damaging	Het
Ms4a14	T	G	19: 11,302,972	K741Q	probably benign	Het
Naip2	A	C	13: 100,161,782	I582S	probably benign	Het
Ncapg2	A	G	12: 116,419,268	I240V	possibly damaging	Het
Ncbp1	T	A	4: 46,149,914	M145K	probably damaging	Het
Nmur2	A	G	11: 56,032,940	F263L	probably damaging	Het
Ntrk2	A	G	13: 58,846,762	E164G	probably benign	Het
Olfr48	T	A	2: 89,844,272	T234S	probably damaging	Het
Olfr705	A	G	7: 106,873,342	L301S	possibly damaging	Het
Olfr785	A	T	10: 129,409,885	D173V	probably benign	Het
P3h2	T	A	16: 25,985,065	Y317F	probably damaging	Het
Pcmtd1	C	T	1: 7,120,420	R38C	probably damaging	Het
Pcyox1	T	C	6: 86,391,679	T286A	possibly damaging	Het
Pdxk	T	C	10: 78,447,967	D131G	probably benign	Het
Ppl	T	C	16: 5,089,068	D1121G	probably damaging	Het
Prkra	T	C	2: 76,633,598	D240G	probably benign	Het
Ptgs1	C	A	2: 36,245,210	N395K	probably benign	Het
Ptprq	A	T	10: 107,590,959	Y1572N	probably damaging	Het
Pyroxd1	A	T	6: 142,358,501	H326L	probably benign	Het
Rapgef5	A	G	12: 117,755,969	D778G	probably benign	Het
Rbm46	T	A	3: 82,864,210	E366V	probably damaging	Het
Rnd1	G	T	15: 98,670,669	H209Q	probably benign	Het
Rnf122	A	T	8: 31,118,500	D32V	possibly damaging	Het
Samd4b	G	A	7: 28,406,456	P446S	probably benign	Het
Slco1a5	C	A	6: 142,259,008	A187S	possibly damaging	Het
Smarca4	G	A	9: 21,686,247	V1436M	probably damaging	Het
Smok2a	G	A	17: 13,226,639	G368R	possibly damaging	Het
Smok3c	T	A	5: 138,064,495	H81Q	probably damaging	Het
Soga3	T	C	10: 29,197,003	S764P	possibly damaging	Het
Stk16	T	C	1: 75,213,652	V245A	probably damaging	Het
Svep1	A	T	4: 58,094,122	N1505K	possibly damaging	Het
Tmem117	T	C	15: 94,714,918	F112L	probably benign	Het
Tmem72	A	G	6: 116,698,330	I67T	probably benign	Het
Tnik	A	G	3: 28,663,909		probably null	Het
Trav14-2	A	G	14: 53,641,058	Q66R	probably damaging	Het
Trpv6	T	A	6: 41,621,342	D677V	probably damaging	Het
Vgll4	C	T	6: 114,862,196	S278N	unknown	Het
Wdfy4	C	T	14: 33,070,618	W2157*	probably null	Het

Other mutations in Tigd4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01791:Tigd4	APN	3	84,594,745 (GRCm38)	missense	probably damaging	1.00
R0080:Tigd4	UTSW	3	84,594,145 (GRCm38)	missense	probably benign	0.19
R0320:Tigd4	UTSW	3	84,595,174 (GRCm38)	missense	probably benign
R0347:Tigd4	UTSW	3	84,593,860 (GRCm38)	missense	probably damaging	1.00
R1875:Tigd4	UTSW	3	84,595,087 (GRCm38)	missense	probably benign	0.00
R1876:Tigd4	UTSW	3	84,593,935 (GRCm38)	nonsense	probably null
R2142:Tigd4	UTSW	3	84,594,363 (GRCm38)	missense	possibly damaging	0.95
R2258:Tigd4	UTSW	3	84,594,293 (GRCm38)	missense	probably benign	0.00
R2519:Tigd4	UTSW	3	84,593,914 (GRCm38)	missense	probably damaging	1.00
R2866:Tigd4	UTSW	3	84,593,952 (GRCm38)	missense	possibly damaging	0.48
R2867:Tigd4	UTSW	3	84,593,952 (GRCm38)	missense	possibly damaging	0.48
R2867:Tigd4	UTSW	3	84,593,952 (GRCm38)	missense	possibly damaging	0.48
R3974:Tigd4	UTSW	3	84,595,278 (GRCm38)	missense	possibly damaging	0.82
R4094:Tigd4	UTSW	3	84,594,640 (GRCm38)	missense	probably damaging	1.00
R4967:Tigd4	UTSW	3	84,595,153 (GRCm38)	missense	probably benign	0.03
R5155:Tigd4	UTSW	3	84,594,663 (GRCm38)	missense	possibly damaging	0.96
R5878:Tigd4	UTSW	3	84,594,442 (GRCm38)	missense	probably benign	0.09
R6174:Tigd4	UTSW	3	84,595,267 (GRCm38)	missense	probably benign	0.02
R6960:Tigd4	UTSW	3	84,594,116 (GRCm38)	missense	probably damaging	1.00
R7414:Tigd4	UTSW	3	84,593,821 (GRCm38)	missense	probably benign	0.37
R7696:Tigd4	UTSW	3	84,594,917 (GRCm38)	missense	possibly damaging	0.89
R7810:Tigd4	UTSW	3	84,595,003 (GRCm38)	missense	possibly damaging	0.49
R8016:Tigd4	UTSW	3	84,594,664 (GRCm38)	missense	possibly damaging	0.46
R8489:Tigd4	UTSW	3	84,595,219 (GRCm38)	missense	probably benign
R8745:Tigd4	UTSW	3	84,594,567 (GRCm38)	missense	probably benign	0.03
R8872:Tigd4	UTSW	3	84,594,240 (GRCm38)	missense	probably benign
X0023:Tigd4	UTSW	3	84,593,857 (GRCm38)	missense	probably damaging	1.00
X0064:Tigd4	UTSW	3	84,594,478 (GRCm38)	missense	probably damaging	1.00
Z1176:Tigd4	UTSW	3	84,594,389 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCTGTTGCTCTTGACCTGACTG -3'
(R):5'- CCCGAGGAAAAGTTACTGCTC -3'

Sequencing Primer
(F):5'- TGACCTGACTGCCCATGC -3'
(R):5'- TCTGCAGCCGAACAATACGTG -3'

Posted On

2019-10-07