Incidental Mutation 'R7447:Slc6a20a'
ID577363
Institutional Source Beutler Lab
Gene Symbol Slc6a20a
Ensembl Gene ENSMUSG00000036814
Gene Namesolute carrier family 6 (neurotransmitter transporter), member 20A
SynonymsXtrp3s1, A730081N20Rik
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R7447 (G1)
Quality Score225.009
Status Not validated
Chromosome9
Chromosomal Location123634770-123678885 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to A at 123656224 bp
ZygosityHeterozygous
Amino Acid Change Asparagine to Isoleucine at position 311 (N311I)
Ref Sequence ENSEMBL: ENSMUSP00000047690 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000040960] [ENSMUST00000170591] [ENSMUST00000171647]
Predicted Effect possibly damaging
Transcript: ENSMUST00000040960
AA Change: N311I

PolyPhen 2 Score 0.470 (Sensitivity: 0.89; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000047690
Gene: ENSMUSG00000036814
AA Change: N311I

DomainStartEndE-ValueType
Pfam:SNF 5 581 1.7e-177 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000170591
SMART Domains Protein: ENSMUSP00000132700
Gene: ENSMUSG00000036814

DomainStartEndE-ValueType
Pfam:SNF 1 37 5.1e-13 PFAM
Pfam:SNF 33 241 3.5e-77 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000171647
AA Change: N274I

PolyPhen 2 Score 0.762 (Sensitivity: 0.85; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000129107
Gene: ENSMUSG00000036814
AA Change: N274I

DomainStartEndE-ValueType
Pfam:SNF 5 196 3.3e-72 PFAM
Pfam:SNF 194 544 8.4e-85 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.4%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Transport of small hydrophilic substances across cell membranes is mediated by substrate-specific transporter proteins which have been classified into several families of related genes. The protein encoded by this gene is a member of the subgroup of transporter with unidentified substrates within the Na+ and Cl- coupled transporter family. This gene is expressed in kidney, and its alternative splicing generates 2 transcript variants. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 88 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4931440F15Rik T C 11: 29,824,122 D445G probably benign Het
Adck5 A T 15: 76,595,196 I484F possibly damaging Het
Ago2 A T 15: 73,138,032 N100K probably benign Het
Appl1 T A 14: 26,959,452 K130* probably null Het
Arhgap39 G A 15: 76,765,597 probably benign Het
Axdnd1 A G 1: 156,418,232 probably null Het
C77080 C A 4: 129,222,042 R988L possibly damaging Het
Camta1 A T 4: 151,083,870 V1332E probably benign Het
Cd3g A G 9: 44,973,559 L129P probably damaging Het
Cd80 T G 16: 38,473,889 S45A probably benign Het
Cdk12 A T 11: 98,245,280 Q1120L unknown Het
Clip1 G A 5: 123,653,633 S158F probably benign Het
Cntn3 C A 6: 102,278,455 E161* probably null Het
Cyp3a59 A C 5: 146,087,405 K67T probably benign Het
Dmxl1 T C 18: 49,864,614 L623P probably damaging Het
Drd3 T A 16: 43,817,063 Y208* probably null Het
Dusp10 A T 1: 184,068,956 M307L probably benign Het
Dync2li1 A T 17: 84,647,713 I267L possibly damaging Het
Edn3 C A 2: 174,761,751 C97* probably null Het
Ehbp1l1 T A 19: 5,719,428 T616S possibly damaging Het
Eif2a C T 3: 58,545,542 T246I probably damaging Het
Enpp5 G A 17: 44,085,264 G356S probably damaging Het
Errfi1 A G 4: 150,866,651 T179A probably damaging Het
Esyt3 G A 9: 99,321,562 L450F probably damaging Het
Evx2 A G 2: 74,659,104 S106P probably benign Het
Fam83a T G 15: 58,009,690 V305G probably benign Het
Gpr171 T A 3: 59,098,439 probably null Het
Grip1 A G 10: 120,086,966 T1106A probably benign Het
Hecw1 A G 13: 14,357,204 Y162H probably damaging Het
Hephl1 C T 9: 15,097,882 probably null Het
Hsp90aa1 A G 12: 110,692,128 I693T possibly damaging Het
Ifit1bl2 T A 19: 34,619,574 D214V probably damaging Het
Igsf10 T C 3: 59,331,801 M320V probably benign Het
Kcnq2 A G 2: 181,113,094 L220P probably damaging Het
Kpna1 C A 16: 36,029,639 Q372K probably damaging Het
Lilrb4a T G 10: 51,491,053 probably null Het
Ly75 C A 2: 60,334,474 E787* probably null Het
Magi1 T G 6: 93,745,581 S666R possibly damaging Het
Mif C A 10: 75,859,853 A39S possibly damaging Het
Mob4 G A 1: 55,131,466 probably benign Het
Mtmr4 G T 11: 87,611,901 C927F probably damaging Het
Myh1 A G 11: 67,219,180 K1398R probably benign Het
Myo3a T C 2: 22,544,426 V873A probably benign Het
Naip5 T C 13: 100,219,696 Q1137R probably benign Het
Naip5 G T 13: 100,219,697 Q1137K not run Het
Nckap5l G A 15: 99,427,476 P382L probably damaging Het
Ngly1 T C 14: 16,290,844 I442T probably damaging Het
Nlrp1a T C 11: 71,092,411 Y1243C probably damaging Het
Olfr1055 T A 2: 86,346,806 H320L possibly damaging Het
Pcsk5 C T 19: 17,510,236 G1027D probably benign Het
Pla2g2c T A 4: 138,731,616 I11N probably benign Het
Polr3d A G 14: 70,439,800 I331T probably damaging Het
Ppp4r4 A G 12: 103,585,726 I293M possibly damaging Het
Prkce G T 17: 86,559,259 V516F probably damaging Het
Prss27 T A 17: 24,045,709 L282Q probably damaging Het
Pxdn A G 12: 29,984,927 Y261C probably damaging Het
R3hcc1l T C 19: 42,562,662 S33P probably benign Het
Rab11fip3 G C 17: 26,068,874 R102G possibly damaging Het
Rabggta A T 14: 55,719,316 N310K probably null Het
Rbbp8 T A 18: 11,660,877 D15E probably benign Het
Rbm5 T C 9: 107,746,179 Y486C probably damaging Het
Rptor T A 11: 119,884,979 F992Y probably benign Het
Slc29a2 T G 19: 5,026,417 L111R probably damaging Het
Slc39a11 T A 11: 113,562,023 I31L probably benign Het
Slc8a1 A G 17: 81,649,006 F201S probably damaging Het
Smtn C A 11: 3,530,196 V342L probably benign Het
Syne2 A G 12: 76,028,079 T4598A probably benign Het
Tchp A G 5: 114,715,655 T267A probably benign Het
Tctex1d2 T A 16: 32,425,271 V95E probably damaging Het
Tes3-ps A G 13: 49,494,032 E128G possibly damaging Het
Tigar C T 6: 127,088,166 G173E probably benign Het
Tmem171 T C 13: 98,688,354 N256S probably benign Het
Tmem204 A G 17: 25,058,296 I205T probably damaging Het
Tmem63a A G 1: 180,958,023 K240R probably benign Het
Tns2 C T 15: 102,110,916 T446M probably damaging Het
Tnxb A T 17: 34,718,470 N2931I probably damaging Het
Trrap G T 5: 144,839,474 R2941L probably damaging Het
Ttc8 A T 12: 98,943,872 R179S probably damaging Het
Ttll12 G T 15: 83,586,975 T234N probably damaging Het
Ttn G T 2: 76,747,232 T24439K probably damaging Het
Ube2z A T 11: 96,055,910 I246N possibly damaging Het
Usp15 A G 10: 123,175,881 Y104H probably damaging Het
Usp29 A C 7: 6,961,220 T21P possibly damaging Het
Usp5 G A 6: 124,821,114 A436V probably damaging Het
Utp20 A G 10: 88,772,492 L1561S probably damaging Het
Xrn1 A G 9: 96,045,494 M1444V probably benign Het
Zfp236 G T 18: 82,633,690 Q885K probably damaging Het
Zfp831 C A 2: 174,646,103 P857Q possibly damaging Het
Other mutations in Slc6a20a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02097:Slc6a20a APN 9 123660619 missense possibly damaging 0.95
eyeful UTSW 9 123637070 missense probably damaging 1.00
R0115:Slc6a20a UTSW 9 123678758 missense possibly damaging 0.84
R0255:Slc6a20a UTSW 9 123664621 missense probably damaging 1.00
R0512:Slc6a20a UTSW 9 123660406 missense probably damaging 1.00
R1744:Slc6a20a UTSW 9 123662993 missense probably benign 0.01
R1751:Slc6a20a UTSW 9 123637100 missense probably damaging 1.00
R1767:Slc6a20a UTSW 9 123637100 missense probably damaging 1.00
R1908:Slc6a20a UTSW 9 123656308 missense probably damaging 1.00
R1983:Slc6a20a UTSW 9 123640587 missense probably damaging 1.00
R2391:Slc6a20a UTSW 9 123664621 missense probably damaging 1.00
R3107:Slc6a20a UTSW 9 123641708 critical splice donor site probably null
R3547:Slc6a20a UTSW 9 123660502 missense probably damaging 1.00
R3760:Slc6a20a UTSW 9 123662989 missense probably damaging 0.99
R4126:Slc6a20a UTSW 9 123660533 missense probably damaging 1.00
R5584:Slc6a20a UTSW 9 123640688 missense probably damaging 1.00
R5881:Slc6a20a UTSW 9 123641708 critical splice donor site probably null
R6749:Slc6a20a UTSW 9 123637070 missense probably damaging 1.00
R7687:Slc6a20a UTSW 9 123656266 missense probably damaging 1.00
R8019:Slc6a20a UTSW 9 123637852 missense probably damaging 1.00
R8019:Slc6a20a UTSW 9 123664574 missense probably damaging 1.00
R8023:Slc6a20a UTSW 9 123660592 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CTGGTAGAAGGCAGCCATTG -3'
(R):5'- ATGCAGCCACGCAGATCTTC -3'

Sequencing Primer
(F):5'- CCATTGGCAATTGAGAAAGGATAAC -3'
(R):5'- ACGCAGATCTTCTTCTCACTGGG -3'
Posted On2019-10-07