Mutagenetix > Incidental Mutation

Incidental Mutation 'R7448:Slc44a2'

577474

Institutional Source

Beutler Lab

Gene Symbol

Slc44a2

Ensembl Gene

ENSMUSG00000057193

Gene Name

solute carrier family 44, member 2

Synonyms

1110028E10Rik, CTL2

MMRRC Submission

045523-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7448 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

21320698-21355028 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 21348346 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Asparagine at position 596 (K596N)

Ref Sequence

ENSEMBL: ENSMUSP00000034697 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034697] [ENSMUST00000215574] [ENSMUST00000217461]

AlphaFold

Q8BY89

Predicted Effect

possibly damaging
Transcript: ENSMUST00000034697
AA Change: K596N

PolyPhen 2 Score 0.866 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000034697
Gene: ENSMUSG00000057193
AA Change: K596N

Domain	Start	End	E-Value	Type
Blast:CLECT	4	37	8e-8	BLAST
transmembrane domain	231	253	N/A	INTRINSIC
transmembrane domain	255	277	N/A	INTRINSIC
Pfam:Choline_transpo	319	678	3.9e-119	PFAM
low complexity region	691	702	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000213535

Predicted Effect

probably benign
Transcript: ENSMUST00000215574

Predicted Effect

probably benign
Transcript: ENSMUST00000217461
AA Change: K594N

PolyPhen 2 Score 0.399 (Sensitivity: 0.89; Specificity: 0.89)

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 98.9%

Validation Efficiency

100% (117/117)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit cochlear hair cell loss, spiral ganglion degeneration, and progressive sensorineural hearing loss. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 119 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610009O20Rik	A	G	18: 38,257,266	N256D	probably damaging	Het
1700015F17Rik	T	C	5: 5,455,952	I110V	probably benign	Het
Acss2	T	C	2: 155,518,266	S54P	probably damaging	Het
Ahnak2	T	C	12: 112,782,502	K1242E		Het
Alpi	T	A	1: 87,101,535	M1L	possibly damaging	Het
Atp2c1	C	T	9: 105,452,783	A283T	probably damaging	Het
Atp8b5	T	G	4: 43,366,021	M764R	probably benign	Het
B4galnt2	T	A	11: 95,869,367	H278L	probably damaging	Het
Bcl9l	G	T	9: 44,509,337	A1347S	probably benign	Het
Bicd2	A	G	13: 49,379,951	E671G	probably damaging	Het
Bmp3	A	T	5: 98,872,218	I167F	probably damaging	Het
Bpifb5	T	A	2: 154,230,185	C271S	possibly damaging	Het
Camsap2	T	A	1: 136,270,906	H793L		Het
Casp8ap2	T	A	4: 32,643,974	S1016T	possibly damaging	Het
Ccdc134	T	A	15: 82,140,948	I216N	possibly damaging	Het
Ccdc63	G	T	5: 122,108,182	R559S	probably benign	Het
Cd276	T	C	9: 58,535,612	T187A	probably benign	Het
Ciao1	C	T	2: 127,245,758	R219H	probably damaging	Het
Clmn	T	C	12: 104,785,428	D256G	possibly damaging	Het
Cobl	A	C	11: 12,256,225	M550R	possibly damaging	Het
Cracr2b	A	T	7: 141,464,205	T117S	probably benign	Het
Cx3cr1	G	A	9: 120,052,216	A40V	probably benign	Het
Cxcl14	A	G	13: 56,292,531	C72R	probably damaging	Het
Dab2	T	A	15: 6,422,266	I121N	probably damaging	Het
Dapk1	A	G	13: 60,751,176	Y820C	probably damaging	Het
Ech1	T	A	7: 28,826,198	C91S	probably damaging	Het
Exosc5	T	G	7: 25,659,309	V25G	probably benign	Het
Fam160a1	G	A	3: 85,672,564	S778L	probably benign	Het
Fbp1	A	C	13: 62,872,750	D122E	possibly damaging	Het
Fbxw13	A	G	9: 109,185,403	Y101H	unknown	Het
Fmnl1	T	A	11: 103,186,627	V271E	probably damaging	Het
Fuk	C	T	8: 110,890,331	G396S	possibly damaging	Het
Galnt1	T	A	18: 24,284,809	S545T	probably benign	Het
Galnt13	G	A	2: 54,516,564	V9M	possibly damaging	Het
Gatsl3	A	G	11: 4,221,897	S325G	not run	Het
Gm3550	A	G	18: 34,737,527	K38R	probably damaging	Het
Gm7995	A	T	14: 42,310,345	I45F		Het
Gpr137	C	T	19: 6,940,358	R134Q	possibly damaging	Het
Gpr22	T	G	12: 31,709,515	I203L	probably benign	Het
H2-Q10	T	C	17: 35,473,560	Y324H	not run	Het
Hcn4	G	A	9: 58,844,299	E403K	unknown	Het
Hddc2	T	A	10: 31,313,416	M1K	probably null	Het
Hps3	A	G	3: 20,035,165	F34S	probably damaging	Het
Igdcc4	G	T	9: 65,123,994	V405L	possibly damaging	Het
Itpr2	C	A	6: 146,329,508	V1215L	probably damaging	Het
Kif26b	T	C	1: 178,914,774	S812P	probably damaging	Het
Lgi1	T	A	19: 38,301,265	C260S	probably damaging	Het
Lhfp	A	G	3: 53,260,599	Y198C	probably damaging	Het
Lrp5	T	C	19: 3,649,439	D282G	probably benign	Het
Lrpprc	T	C	17: 84,772,139	T230A	probably damaging	Het
Lrtm2	A	G	6: 119,320,823	W86R	probably benign	Het
Magi2	G	A	5: 20,358,956	G199D	probably damaging	Het
Map1b	C	T	13: 99,508,140	R85Q	probably damaging	Het
March7	T	A	2: 60,247,514		probably null	Het
Morc1	A	G	16: 48,431,345	D2G	probably damaging	Het
Mpp7	A	T	18: 7,351,079	F539L	probably damaging	Het
Muc13	A	T	16: 33,814,581	I502F	probably damaging	Het
Myh13	A	G	11: 67,364,460		probably null	Het
Nat10	C	G	2: 103,748,045	L238F	probably damaging	Het
Nckap1	G	A	2: 80,524,541	T679I	probably damaging	Het
Npy6r	T	A	18: 44,276,193	I227N	probably damaging	Het
Nudt18	A	T	14: 70,577,949	M1L	unknown	Het
Olfr1306	T	A	2: 111,912,292	I213L	probably benign	Het
Olfr26	C	A	9: 38,855,116	T18K	probably damaging	Het
Olfr270	T	A	4: 52,971,207	N195K	probably damaging	Het
Olfr298	G	A	7: 86,489,209	T114I	probably damaging	Het
Olfr52	T	C	2: 86,181,334	Y259C	probably damaging	Het
Pcdha3	T	A	18: 36,946,213	F3I	probably benign	Het
Pcdhga3	T	A	18: 37,675,864	Y457N	possibly damaging	Het
Pclo	A	T	5: 14,669,617	Q1256L	unknown	Het
Piezo2	C	T	18: 63,024,472	R2389H	probably damaging	Het
Pml	G	T	9: 58,247,213	Q126K	probably benign	Het
Ppef2	A	G	5: 92,228,704	Y655H	probably damaging	Het
Ppp4r1	T	C	17: 65,840,941	V926A	probably damaging	Het
Psg29	A	G	7: 17,211,723	D406G	possibly damaging	Het
Ptprf	T	C	4: 118,235,667	D517G	probably benign	Het
Ptprg	G	A	14: 12,142,461	E371K	probably benign	Het
Rasgrp1	T	C	2: 117,287,943	I522V	probably damaging	Het
Rasgrp1	T	A	2: 117,291,697	D404V	possibly damaging	Het
Rb1cc1	T	A	1: 6,245,503	F541I	probably damaging	Het
Rgsl1	C	A	1: 153,844,101		probably null	Het
Rhobtb2	C	T	14: 69,795,948	W524*	probably null	Het
Rhox4d	G	A	X: 37,518,992	G191E	unknown	Het
Rims1	A	G	1: 22,404,475	S211P		Het
Ripor2	A	T	13: 24,670,071	Q54L	possibly damaging	Het
Rnf213	A	G	11: 119,481,291	I4903V		Het
Robo3	T	A	9: 37,424,815	I452F	possibly damaging	Het
Seh1l	C	T	18: 67,783,918	H56Y	probably damaging	Het
Sema3b	T	A	9: 107,602,963	D192V	probably damaging	Het
Sidt1	A	T	16: 44,286,400	C222*	probably null	Het
Skor1	A	G	9: 63,146,103	F195L	probably damaging	Het
Smgc	A	G	15: 91,845,493	K217E	probably benign	Het
Socs7	C	A	11: 97,377,091	H349Q	possibly damaging	Het
Speer4f2	A	G	5: 17,376,542	T161A		Het
Spg11	T	C	2: 122,093,545		probably null	Het
Ssb	A	G	2: 69,863,280	T11A	probably benign	Het
Sun1	A	G	5: 139,246,834	S837G	probably damaging	Het
Szt2	A	C	4: 118,363,471	S3385A	unknown	Het
Tapbp	T	C	17: 33,920,417	V129A	possibly damaging	Het
Thsd1	T	C	8: 22,243,333	I132T	possibly damaging	Het
Tm6sf2	T	A	8: 70,077,939	V223E	possibly damaging	Het
Tm9sf4	T	A	2: 153,194,347	M343K	probably benign	Het
Tmem57	A	T	4: 134,828,279	N294K	possibly damaging	Het
Trank1	C	A	9: 111,366,349	P1147Q	probably benign	Het
Trip4	G	A	9: 65,866,475	T275M	probably damaging	Het
Tsen34	T	C	7: 3,695,835		probably null	Het
Ttc26	T	A	6: 38,404,487	Y319*	probably null	Het
Ttn	T	C	2: 76,850,078	E1086G	unknown	Het
Ubr4	A	T	4: 139,462,467	M853L	unknown	Het
Ubxn11	A	T	4: 134,125,155	R352W	probably damaging	Het
Vmn1r35	G	A	6: 66,679,235		probably benign	Het
Vmn2r107	C	T	17: 20,375,732	T849I	probably benign	Het
Vmn2r93	C	A	17: 18,325,986	L707I	probably benign	Het
Wwc1	G	A	11: 35,875,706	T574I	probably benign	Het
Zfp143	A	G	7: 110,070,498	M45V	probably benign	Het
Zfp518a	T	A	19: 40,914,157	N843K	possibly damaging	Het
Zfp87	A	T	13: 67,517,044	M433K	probably benign	Het
Zfp873	C	A	10: 82,060,627	H397Q	probably damaging	Het
Zscan21	A	T	5: 138,117,848		probably benign	Het

Other mutations in Slc44a2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00786:Slc44a2	APN	9	21,345,935 (GRCm38)	missense	probably damaging	0.96
IGL01506:Slc44a2	APN	9	21,337,950 (GRCm38)	missense	probably benign	0.30
IGL01687:Slc44a2	APN	9	21,345,947 (GRCm38)	missense	probably benign	0.00
IGL01786:Slc44a2	APN	9	21,352,486 (GRCm38)	missense	probably damaging	1.00
IGL01795:Slc44a2	APN	9	21,345,349 (GRCm38)	missense	probably damaging	0.97
IGL02338:Slc44a2	APN	9	21,347,042 (GRCm38)	missense	probably damaging	1.00
IGL02701:Slc44a2	APN	9	21,347,951 (GRCm38)	missense	probably benign	0.01
IGL02820:Slc44a2	APN	9	21,342,977 (GRCm38)	missense	probably benign
IGL03087:Slc44a2	APN	9	21,346,765 (GRCm38)	missense	probably benign	0.00
IGL03153:Slc44a2	APN	9	21,343,200 (GRCm38)	missense	probably benign	0.44
IGL03233:Slc44a2	APN	9	21,348,622 (GRCm38)	missense	possibly damaging	0.95
freighted	UTSW	9	21,341,969 (GRCm38)	missense	probably null	0.08
Loaded	UTSW	9	21,348,149 (GRCm38)	critical splice donor site	probably null
R1177:Slc44a2	UTSW	9	21,348,583 (GRCm38)	missense	probably benign	0.00
R1367:Slc44a2	UTSW	9	21,343,026 (GRCm38)	missense	probably benign	0.00
R1474:Slc44a2	UTSW	9	21,353,694 (GRCm38)	missense	probably damaging	0.99
R2077:Slc44a2	UTSW	9	21,353,724 (GRCm38)	missense	probably damaging	1.00
R2432:Slc44a2	UTSW	9	21,344,834 (GRCm38)	missense	probably damaging	1.00
R3722:Slc44a2	UTSW	9	21,342,977 (GRCm38)	missense	possibly damaging	0.78
R3958:Slc44a2	UTSW	9	21,348,541 (GRCm38)	missense	probably damaging	0.96
R4557:Slc44a2	UTSW	9	21,346,783 (GRCm38)	missense	possibly damaging	0.93
R4641:Slc44a2	UTSW	9	21,346,882 (GRCm38)	missense	probably damaging	1.00
R4725:Slc44a2	UTSW	9	21,348,395 (GRCm38)	missense	probably damaging	1.00
R4859:Slc44a2	UTSW	9	21,348,145 (GRCm38)	missense	probably damaging	0.98
R6701:Slc44a2	UTSW	9	21,320,853 (GRCm38)	critical splice donor site	probably null
R7068:Slc44a2	UTSW	9	21,320,848 (GRCm38)	missense	probably benign	0.00
R7206:Slc44a2	UTSW	9	21,346,807 (GRCm38)	missense	probably damaging	1.00
R7233:Slc44a2	UTSW	9	21,348,149 (GRCm38)	critical splice donor site	probably null
R7287:Slc44a2	UTSW	9	21,342,456 (GRCm38)	missense	probably benign
R7329:Slc44a2	UTSW	9	21,342,752 (GRCm38)	missense	probably damaging	1.00
R7432:Slc44a2	UTSW	9	21,343,215 (GRCm38)	missense	probably benign	0.00
R7442:Slc44a2	UTSW	9	21,345,523 (GRCm38)	missense	probably damaging	1.00
R7514:Slc44a2	UTSW	9	21,342,472 (GRCm38)	missense	possibly damaging	0.46
R7523:Slc44a2	UTSW	9	21,345,992 (GRCm38)	missense	probably null	0.81
R8167:Slc44a2	UTSW	9	21,346,772 (GRCm38)	missense	possibly damaging	0.67
R8211:Slc44a2	UTSW	9	21,348,138 (GRCm38)	missense	probably damaging	1.00
R8240:Slc44a2	UTSW	9	21,342,185 (GRCm38)	missense	probably benign
R8293:Slc44a2	UTSW	9	21,353,688 (GRCm38)	missense	probably damaging	1.00
R8294:Slc44a2	UTSW	9	21,348,347 (GRCm38)	missense	probably damaging	1.00
R8341:Slc44a2	UTSW	9	21,342,199 (GRCm38)	missense	probably benign	0.00
R8471:Slc44a2	UTSW	9	21,341,969 (GRCm38)	missense	probably null	0.08
R8732:Slc44a2	UTSW	9	21,348,586 (GRCm38)	missense	probably benign	0.01
R8892:Slc44a2	UTSW	9	21,341,857 (GRCm38)	splice site	probably benign
R9019:Slc44a2	UTSW	9	21,353,781 (GRCm38)	missense	probably damaging	0.99
R9149:Slc44a2	UTSW	9	21,342,009 (GRCm38)	missense	possibly damaging	0.67
R9318:Slc44a2	UTSW	9	21,341,972 (GRCm38)	missense	probably damaging	1.00
R9322:Slc44a2	UTSW	9	21,346,950 (GRCm38)	missense	probably damaging	1.00
R9449:Slc44a2	UTSW	9	21,347,037 (GRCm38)	missense
R9731:Slc44a2	UTSW	9	21,352,474 (GRCm38)	missense	possibly damaging	0.90
X0018:Slc44a2	UTSW	9	21,342,788 (GRCm38)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- AGCCAGGAATGCCTTCTTCC -3'
(R):5'- GGCTGAGTCTTCAAGGAAGG -3'

Sequencing Primer
(F):5'- TATCATCAGGTTAGCAGGACAC -3'
(R):5'- CTGAGTCTTCAAGGAAGGACTTCAC -3'

Posted On

2019-10-07