Mutagenetix > Incidental Mutation

Incidental Mutation 'R7449:Lrrn1'

577553

Institutional Source

Beutler Lab

Gene Symbol

Lrrn1

Ensembl Gene

ENSMUSG00000034648

Gene Name

leucine rich repeat protein 1, neuronal

Synonyms

2810047E21Rik, NLRR-1

MMRRC Submission

045524-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.439) question?

Stock #

R7449 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

107529768-107570214 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 107568521 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 427 (S427P)

Ref Sequence

ENSEMBL: ENSMUSP00000037096 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000049285]

AlphaFold

Q61809

Predicted Effect

possibly damaging
Transcript: ENSMUST00000049285
AA Change: S427P

PolyPhen 2 Score 0.906 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000037096
Gene: ENSMUSG00000034648
AA Change: S427P

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
LRRNT	31	76	2.89e-1	SMART
LRR	94	117	1.06e1	SMART
LRR	118	141	1.89e-1	SMART
LRR_TYP	142	165	4.3e-5	SMART
LRR	166	189	1.76e-1	SMART
LRR	214	237	4.09e1	SMART
LRR	238	261	1.53e1	SMART
LRR	262	285	2.63e0	SMART
LRR	311	335	1.45e2	SMART
LRR	336	359	4.21e1	SMART
LRRCT	371	423	2.14e-10	SMART
IGc2	438	506	6.34e-15	SMART
FN3	523	605	8.71e-2	SMART
transmembrane domain	631	653	N/A	INTRINSIC
low complexity region	690	701	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygous null mutant mice exhibited decreased exploratory activity and the female mutants exhibited an increased anxiety-like response during open field testing. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca16	T	A	7: 120,435,908 (GRCm38)	Y306N	possibly damaging	Het
Adgrv1	A	T	13: 81,499,073 (GRCm38)	V3116D	probably damaging	Het
Adssl1	A	T	12: 112,634,151 (GRCm38)	T185S	probably damaging	Het
Ago2	G	A	15: 73,146,499 (GRCm38)	P30L	probably damaging	Het
Atp5j	C	T	16: 84,831,363 (GRCm38)	V44M	probably benign	Het
Atp7b	T	A	8: 22,011,849 (GRCm38)	I833F	probably damaging	Het
Birc6	T	A	17: 74,702,341 (GRCm38)	N4869K	probably benign	Het
Cacna1c	C	T	6: 118,602,349 (GRCm38)	D1796N		Het
Ccng2	C	G	5: 93,273,343 (GRCm38)	S237R	probably benign	Het
Cnga1	A	G	5: 72,605,304 (GRCm38)	I289T	probably benign	Het
Crybg1	C	A	10: 44,004,519 (GRCm38)	E224D	probably benign	Het
Dysf	T	C	6: 84,137,380 (GRCm38)	L1217P	possibly damaging	Het
Ebf2	T	A	14: 67,410,020 (GRCm38)	N339K	probably damaging	Het
Eva1c	T	C	16: 90,876,193 (GRCm38)		probably null	Het
Fam172a	A	G	13: 77,759,442 (GRCm38)	I41V	probably damaging	Het
Fam184a	T	C	10: 53,698,634 (GRCm38)	E293G	probably damaging	Het
Folh1	G	A	7: 86,731,748 (GRCm38)	P506S	probably benign	Het
Ftcd	A	T	10: 76,580,163 (GRCm38)	K210N	probably benign	Het
Gdf6	T	A	4: 9,844,494 (GRCm38)	V6D	possibly damaging	Het
Ghitm	C	A	14: 37,131,581 (GRCm38)	G101C	probably damaging	Het
Gimap5	T	A	6: 48,752,904 (GRCm38)	V136D	probably damaging	Het
Gm9745	T	A	13: 8,943,304 (GRCm38)	H51L	probably damaging	Het
Grm4	C	T	17: 27,435,371 (GRCm38)	G535D	probably damaging	Het
Gse1	T	C	8: 120,229,711 (GRCm38)	S314P	unknown	Het
Hnrnpdl	A	G	5: 100,037,155 (GRCm38)	I279T	probably damaging	Het
Itpr1	T	C	6: 108,389,384 (GRCm38)	S923P	probably damaging	Het
Krt39	C	A	11: 99,518,061 (GRCm38)	C303F	probably benign	Het
Lrrn3	T	A	12: 41,453,488 (GRCm38)	R277W	probably damaging	Het
Ltb4r1	T	C	14: 55,767,918 (GRCm38)	L226P	probably damaging	Het
Map1b	C	T	13: 99,508,140 (GRCm38)	R85Q	probably damaging	Het
Mcoln1	T	C	8: 3,507,285 (GRCm38)	L125P	probably damaging	Het
Nid1	T	G	13: 13,482,051 (GRCm38)	V589G	probably damaging	Het
Nlrp5	T	G	7: 23,417,526 (GRCm38)	F225C	probably benign	Het
Notch3	C	T	17: 32,157,966 (GRCm38)	A322T	probably damaging	Het
Olfr299	A	G	7: 86,465,855 (GRCm38)	H148R	probably benign	Het
Olfr69	G	T	7: 103,767,819 (GRCm38)	Q193K	probably benign	Het
Olfr854	T	A	9: 19,566,866 (GRCm38)	T173S	probably benign	Het
Otogl	A	G	10: 107,803,663 (GRCm38)	C1363R	probably damaging	Het
Ovol1	T	A	19: 5,553,597 (GRCm38)	D92V	probably benign	Het
Pigt	T	C	2: 164,502,499 (GRCm38)	L356P	probably damaging	Het
Plekhg3	A	G	12: 76,566,222 (GRCm38)	Q434R	probably damaging	Het
Plekhh1	T	C	12: 79,079,552 (GRCm38)	F1344L	probably benign	Het
Psmd3	T	A	11: 98,695,551 (GRCm38)	L515Q	probably damaging	Het
Pus1	A	G	5: 110,774,586 (GRCm38)	L405P	probably damaging	Het
Qtrt2	T	A	16: 43,881,032 (GRCm38)	H55L	probably benign	Het
Rasgrp1	T	C	2: 117,287,943 (GRCm38)	I522V	probably damaging	Het
Raver2	T	A	4: 101,102,663 (GRCm38)	H113Q	probably damaging	Het
Recql4	T	C	15: 76,705,565 (GRCm38)	D760G	unknown	Het
Rhobtb3	C	T	13: 75,910,741 (GRCm38)	V313M	probably benign	Het
Rhox4d	G	A	X: 37,518,992 (GRCm38)	G191E	unknown	Het
Rictor	C	T	15: 6,772,154 (GRCm38)	S441L	probably benign	Het
Rnf185	T	C	11: 3,426,578 (GRCm38)	Q135R	probably benign	Het
Sema3f	T	C	9: 107,684,036 (GRCm38)	S584G	probably damaging	Het
Sh3pxd2a	T	A	19: 47,267,652 (GRCm38)	T904S	probably benign	Het
Slc4a10	T	C	2: 62,303,946 (GRCm38)	V1002A	probably benign	Het
Taf1b	T	C	12: 24,504,993 (GRCm38)	I55T	probably benign	Het
Tchh	CTCCGCCGGGAGCAAGAGCTCCGCCGGGAGCAAGAGTTCCGCCGGGAGCAAGAGCTCCGCCGGGAGCAAGAGTTCCGCCGGGAGCAAGAGCTCCGCC	CTCCGCCGGGAGCAAGAGCTCCGCCGGGAGCAAGAGTTCCGCCGGGAGCAAGAGCTCCGCC	3: 93,446,708 (GRCm38)		probably benign	Het
Tenm4	A	T	7: 96,874,213 (GRCm38)	D1654V	possibly damaging	Het
Tgfb1	G	A	7: 25,704,838 (GRCm38)	V357M	probably damaging	Het
Tnxb	C	T	17: 34,703,361 (GRCm38)	P2383S	possibly damaging	Het
Trpm1	A	T	7: 64,208,975 (GRCm38)	M382L	probably benign	Het
Trrap	A	G	5: 144,851,209 (GRCm38)	Y3516C	probably damaging	Het
Txnrd1	T	A	10: 82,885,233 (GRCm38)	Y494*	probably null	Het
Ubr2	C	T	17: 46,964,788 (GRCm38)	E811K	probably damaging	Het
Ubxn4	T	A	1: 128,244,543 (GRCm38)	F25I	possibly damaging	Het
Vmn2r117	A	G	17: 23,459,895 (GRCm38)	M785T	probably damaging	Het
Vmn2r99	G	A	17: 19,379,145 (GRCm38)	D364N	probably benign	Het
Vps45	C	A	3: 96,047,136 (GRCm38)		probably null	Het
Wdr25	A	C	12: 109,026,441 (GRCm38)	H426P	probably damaging	Het
Wdr83	A	T	8: 85,079,681 (GRCm38)	W136R	probably damaging	Het
Xylt1	A	C	7: 117,592,005 (GRCm38)	I343L	possibly damaging	Het
Znrd1as	A	G	17: 36,964,383 (GRCm38)	D16G	probably damaging	Het
Zscan4b	T	C	7: 10,904,058 (GRCm38)	Q53R	possibly damaging	Het

Other mutations in Lrrn1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00834:Lrrn1	APN	6	107,568,308 (GRCm38)	missense	probably benign	0.06
IGL00949:Lrrn1	APN	6	107,569,300 (GRCm38)	missense	probably benign	0.15
IGL01594:Lrrn1	APN	6	107,567,493 (GRCm38)	missense	probably damaging	0.99
IGL02814:Lrrn1	APN	6	107,567,352 (GRCm38)	missense	probably damaging	1.00
IGL02824:Lrrn1	APN	6	107,568,534 (GRCm38)	missense	possibly damaging	0.57
IGL02931:Lrrn1	APN	6	107,567,748 (GRCm38)	missense	probably damaging	1.00
R0399:Lrrn1	UTSW	6	107,569,120 (GRCm38)	missense	probably benign
R1109:Lrrn1	UTSW	6	107,567,264 (GRCm38)	missense	probably benign
R1620:Lrrn1	UTSW	6	107,568,366 (GRCm38)	missense	probably damaging	1.00
R1826:Lrrn1	UTSW	6	107,567,568 (GRCm38)	missense	probably benign	0.05
R1893:Lrrn1	UTSW	6	107,568,122 (GRCm38)	missense	possibly damaging	0.82
R2327:Lrrn1	UTSW	6	107,568,833 (GRCm38)	missense	probably benign	0.05
R3684:Lrrn1	UTSW	6	107,567,949 (GRCm38)	missense	probably benign	0.13
R3757:Lrrn1	UTSW	6	107,569,208 (GRCm38)	missense	possibly damaging	0.81
R4538:Lrrn1	UTSW	6	107,568,637 (GRCm38)	missense	probably benign	0.21
R4922:Lrrn1	UTSW	6	107,568,350 (GRCm38)	missense	probably damaging	1.00
R4946:Lrrn1	UTSW	6	107,568,890 (GRCm38)	missense	probably benign	0.16
R4970:Lrrn1	UTSW	6	107,569,344 (GRCm38)	missense	probably benign	0.06
R4977:Lrrn1	UTSW	6	107,568,707 (GRCm38)	missense	probably benign
R5121:Lrrn1	UTSW	6	107,569,207 (GRCm38)	missense	possibly damaging	0.89
R5186:Lrrn1	UTSW	6	107,569,224 (GRCm38)	missense	probably damaging	1.00
R5625:Lrrn1	UTSW	6	107,567,354 (GRCm38)	missense	probably damaging	0.99
R5736:Lrrn1	UTSW	6	107,567,384 (GRCm38)	missense	probably damaging	1.00
R5873:Lrrn1	UTSW	6	107,568,975 (GRCm38)	missense	probably damaging	0.98
R5949:Lrrn1	UTSW	6	107,567,504 (GRCm38)	missense	probably benign	0.00
R6046:Lrrn1	UTSW	6	107,568,527 (GRCm38)	missense	probably benign	0.00
R6370:Lrrn1	UTSW	6	107,569,224 (GRCm38)	missense	probably damaging	1.00
R7138:Lrrn1	UTSW	6	107,568,375 (GRCm38)	missense	probably damaging	1.00
R7169:Lrrn1	UTSW	6	107,567,604 (GRCm38)	missense	probably damaging	1.00
R7413:Lrrn1	UTSW	6	107,569,122 (GRCm38)	missense	probably benign	0.00
R7969:Lrrn1	UTSW	6	107,567,850 (GRCm38)	missense	probably damaging	1.00
R8077:Lrrn1	UTSW	6	107,568,822 (GRCm38)	missense	probably damaging	0.99
R8288:Lrrn1	UTSW	6	107,566,994 (GRCm38)	start gained	probably benign
R8420:Lrrn1	UTSW	6	107,569,333 (GRCm38)	missense	probably benign	0.00
R8725:Lrrn1	UTSW	6	107,567,342 (GRCm38)	nonsense	probably null
R9007:Lrrn1	UTSW	6	107,567,859 (GRCm38)	missense	probably damaging	0.99
R9133:Lrrn1	UTSW	6	107,567,607 (GRCm38)	missense	probably damaging	1.00
R9367:Lrrn1	UTSW	6	107,568,132 (GRCm38)	missense	probably damaging	0.98
R9373:Lrrn1	UTSW	6	107,568,504 (GRCm38)	missense	possibly damaging	0.82
R9475:Lrrn1	UTSW	6	107,568,300 (GRCm38)	missense	probably damaging	1.00
R9513:Lrrn1	UTSW	6	107,568,544 (GRCm38)	missense	probably benign	0.04
R9516:Lrrn1	UTSW	6	107,568,544 (GRCm38)	missense	probably benign	0.04
R9549:Lrrn1	UTSW	6	107,569,017 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCTGCGTGAGATCAGCATCC -3'
(R):5'- AGGTGTACCTTCCTGAGTCTTC -3'

Sequencing Primer
(F):5'- GTGAGATCAGCATCCACAGC -3'
(R):5'- ATGTTTGCTATCTCCAAGGTGC -3'

Posted On

2019-10-07