Incidental Mutation 'R7449:Wdr25'
ID 577584
Institutional Source Beutler Lab
Gene Symbol Wdr25
Ensembl Gene ENSMUSG00000040877
Gene Name WD repeat domain 25
Synonyms
MMRRC Submission 045524-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.935) question?
Stock # R7449 (G1)
Quality Score 225.009
Status Not validated
Chromosome 12
Chromosomal Location 108893631-109028452 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to C at 109026441 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Histidine to Proline at position 426 (H426P)
Ref Sequence ENSEMBL: ENSMUSP00000035553 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000047115] [ENSMUST00000167816] [ENSMUST00000221510]
AlphaFold E9Q349
Predicted Effect probably damaging
Transcript: ENSMUST00000047115
AA Change: H426P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000035553
Gene: ENSMUSG00000040877
AA Change: H426P

DomainStartEndE-ValueType
low complexity region 120 132 N/A INTRINSIC
low complexity region 180 206 N/A INTRINSIC
WD40 226 268 1.83e-7 SMART
WD40 272 311 6.73e-6 SMART
WD40 312 353 2.58e-1 SMART
Blast:WD40 356 402 7e-11 BLAST
Blast:WD40 407 445 6e-8 BLAST
WD40 451 492 9.6e-2 SMART
WD40 495 535 3e-3 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000167816
AA Change: H426P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000129855
Gene: ENSMUSG00000040877
AA Change: H426P

DomainStartEndE-ValueType
low complexity region 120 132 N/A INTRINSIC
low complexity region 180 206 N/A INTRINSIC
WD40 226 268 1.83e-7 SMART
WD40 272 311 6.73e-6 SMART
WD40 312 353 2.58e-1 SMART
Blast:WD40 356 402 7e-11 BLAST
Blast:WD40 407 445 6e-8 BLAST
WD40 451 492 9.6e-2 SMART
WD40 495 535 3e-3 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000221510
AA Change: H74P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 73 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca16 T A 7: 120,435,908 (GRCm38) Y306N possibly damaging Het
Adgrv1 A T 13: 81,499,073 (GRCm38) V3116D probably damaging Het
Adss1 A T 12: 112,634,151 (GRCm38) T185S probably damaging Het
Ago2 G A 15: 73,146,499 (GRCm38) P30L probably damaging Het
Arb2a A G 13: 77,759,442 (GRCm38) I41V probably damaging Het
Atp5pf C T 16: 84,831,363 (GRCm38) V44M probably benign Het
Atp7b T A 8: 22,011,849 (GRCm38) I833F probably damaging Het
Birc6 T A 17: 74,702,341 (GRCm38) N4869K probably benign Het
Cacna1c C T 6: 118,602,349 (GRCm38) D1796N Het
Ccng2 C G 5: 93,273,343 (GRCm38) S237R probably benign Het
Cnga1 A G 5: 72,605,304 (GRCm38) I289T probably benign Het
Crybg1 C A 10: 44,004,519 (GRCm38) E224D probably benign Het
Dysf T C 6: 84,137,380 (GRCm38) L1217P possibly damaging Het
Ebf2 T A 14: 67,410,020 (GRCm38) N339K probably damaging Het
Eva1c T C 16: 90,876,193 (GRCm38) probably null Het
Fam184a T C 10: 53,698,634 (GRCm38) E293G probably damaging Het
Folh1 G A 7: 86,731,748 (GRCm38) P506S probably benign Het
Ftcd A T 10: 76,580,163 (GRCm38) K210N probably benign Het
Gdf6 T A 4: 9,844,494 (GRCm38) V6D possibly damaging Het
Ghitm C A 14: 37,131,581 (GRCm38) G101C probably damaging Het
Gimap5 T A 6: 48,752,904 (GRCm38) V136D probably damaging Het
Grm4 C T 17: 27,435,371 (GRCm38) G535D probably damaging Het
Gse1 T C 8: 120,229,711 (GRCm38) S314P unknown Het
Hnrnpdl A G 5: 100,037,155 (GRCm38) I279T probably damaging Het
Idi2l T A 13: 8,943,304 (GRCm38) H51L probably damaging Het
Itpr1 T C 6: 108,389,384 (GRCm38) S923P probably damaging Het
Krt39 C A 11: 99,518,061 (GRCm38) C303F probably benign Het
Lrrn1 T C 6: 107,568,521 (GRCm38) S427P possibly damaging Het
Lrrn3 T A 12: 41,453,488 (GRCm38) R277W probably damaging Het
Ltb4r1 T C 14: 55,767,918 (GRCm38) L226P probably damaging Het
Map1b C T 13: 99,508,140 (GRCm38) R85Q probably damaging Het
Mcoln1 T C 8: 3,507,285 (GRCm38) L125P probably damaging Het
Nid1 T G 13: 13,482,051 (GRCm38) V589G probably damaging Het
Nlrp5 T G 7: 23,417,526 (GRCm38) F225C probably benign Het
Notch3 C T 17: 32,157,966 (GRCm38) A322T probably damaging Het
Or14c43 A G 7: 86,465,855 (GRCm38) H148R probably benign Het
Or52a5b G T 7: 103,767,819 (GRCm38) Q193K probably benign Het
Or7g34 T A 9: 19,566,866 (GRCm38) T173S probably benign Het
Otogl A G 10: 107,803,663 (GRCm38) C1363R probably damaging Het
Ovol1 T A 19: 5,553,597 (GRCm38) D92V probably benign Het
Pigt T C 2: 164,502,499 (GRCm38) L356P probably damaging Het
Plekhg3 A G 12: 76,566,222 (GRCm38) Q434R probably damaging Het
Plekhh1 T C 12: 79,079,552 (GRCm38) F1344L probably benign Het
Polr1has A G 17: 36,964,383 (GRCm38) D16G probably damaging Het
Psmd3 T A 11: 98,695,551 (GRCm38) L515Q probably damaging Het
Pus1 A G 5: 110,774,586 (GRCm38) L405P probably damaging Het
Qtrt2 T A 16: 43,881,032 (GRCm38) H55L probably benign Het
Rasgrp1 T C 2: 117,287,943 (GRCm38) I522V probably damaging Het
Raver2 T A 4: 101,102,663 (GRCm38) H113Q probably damaging Het
Recql4 T C 15: 76,705,565 (GRCm38) D760G unknown Het
Rhobtb3 C T 13: 75,910,741 (GRCm38) V313M probably benign Het
Rhox4d G A X: 37,518,992 (GRCm38) G191E unknown Het
Rictor C T 15: 6,772,154 (GRCm38) S441L probably benign Het
Rnf185 T C 11: 3,426,578 (GRCm38) Q135R probably benign Het
Sema3f T C 9: 107,684,036 (GRCm38) S584G probably damaging Het
Sh3pxd2a T A 19: 47,267,652 (GRCm38) T904S probably benign Het
Slc4a10 T C 2: 62,303,946 (GRCm38) V1002A probably benign Het
Taf1b T C 12: 24,504,993 (GRCm38) I55T probably benign Het
Tchh CTCCGCCGGGAGCAAGAGCTCCGCCGGGAGCAAGAGTTCCGCCGGGAGCAAGAGCTCCGCCGGGAGCAAGAGTTCCGCCGGGAGCAAGAGCTCCGCC CTCCGCCGGGAGCAAGAGCTCCGCCGGGAGCAAGAGTTCCGCCGGGAGCAAGAGCTCCGCC 3: 93,446,708 (GRCm38) probably benign Het
Tenm4 A T 7: 96,874,213 (GRCm38) D1654V possibly damaging Het
Tgfb1 G A 7: 25,704,838 (GRCm38) V357M probably damaging Het
Tnxb C T 17: 34,703,361 (GRCm38) P2383S possibly damaging Het
Trpm1 A T 7: 64,208,975 (GRCm38) M382L probably benign Het
Trrap A G 5: 144,851,209 (GRCm38) Y3516C probably damaging Het
Txnrd1 T A 10: 82,885,233 (GRCm38) Y494* probably null Het
Ubr2 C T 17: 46,964,788 (GRCm38) E811K probably damaging Het
Ubxn4 T A 1: 128,244,543 (GRCm38) F25I possibly damaging Het
Vmn2r117 A G 17: 23,459,895 (GRCm38) M785T probably damaging Het
Vmn2r99 G A 17: 19,379,145 (GRCm38) D364N probably benign Het
Vps45 C A 3: 96,047,136 (GRCm38) probably null Het
Wdr83 A T 8: 85,079,681 (GRCm38) W136R probably damaging Het
Xylt1 A C 7: 117,592,005 (GRCm38) I343L possibly damaging Het
Zscan4b T C 7: 10,904,058 (GRCm38) Q53R possibly damaging Het
Other mutations in Wdr25
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00946:Wdr25 APN 12 109,025,027 (GRCm38) missense possibly damaging 0.89
IGL02479:Wdr25 APN 12 108,898,601 (GRCm38) missense probably benign
IGL02672:Wdr25 APN 12 108,898,081 (GRCm38) nonsense probably null
IGL03329:Wdr25 APN 12 108,898,336 (GRCm38) missense probably benign
R1061:Wdr25 UTSW 12 108,992,799 (GRCm38) splice site probably null
R1402:Wdr25 UTSW 12 109,026,539 (GRCm38) missense probably damaging 1.00
R1402:Wdr25 UTSW 12 109,026,539 (GRCm38) missense probably damaging 1.00
R1582:Wdr25 UTSW 12 108,898,054 (GRCm38) missense possibly damaging 0.94
R1764:Wdr25 UTSW 12 109,026,438 (GRCm38) nonsense probably null
R1954:Wdr25 UTSW 12 108,898,541 (GRCm38) missense probably damaging 0.99
R2258:Wdr25 UTSW 12 108,898,174 (GRCm38) missense possibly damaging 0.94
R3770:Wdr25 UTSW 12 108,898,420 (GRCm38) missense probably damaging 0.97
R3803:Wdr25 UTSW 12 108,898,553 (GRCm38) missense probably damaging 1.00
R3948:Wdr25 UTSW 12 109,027,282 (GRCm38) missense probably benign 0.02
R4183:Wdr25 UTSW 12 109,027,331 (GRCm38) missense probably benign 0.00
R5246:Wdr25 UTSW 12 109,027,456 (GRCm38) missense probably benign 0.06
R5290:Wdr25 UTSW 12 108,898,042 (GRCm38) missense probably benign 0.26
R5305:Wdr25 UTSW 12 109,026,440 (GRCm38) missense probably damaging 1.00
R5813:Wdr25 UTSW 12 109,027,421 (GRCm38) missense possibly damaging 0.47
R5942:Wdr25 UTSW 12 108,898,466 (GRCm38) missense probably benign 0.00
R6386:Wdr25 UTSW 12 109,025,065 (GRCm38) missense probably damaging 1.00
R7171:Wdr25 UTSW 12 109,024,996 (GRCm38) missense probably damaging 0.98
R7616:Wdr25 UTSW 12 108,992,893 (GRCm38) missense possibly damaging 0.73
R7617:Wdr25 UTSW 12 108,992,893 (GRCm38) missense possibly damaging 0.73
R7619:Wdr25 UTSW 12 108,992,893 (GRCm38) missense possibly damaging 0.73
R7622:Wdr25 UTSW 12 108,992,893 (GRCm38) missense possibly damaging 0.73
R7623:Wdr25 UTSW 12 108,992,893 (GRCm38) missense possibly damaging 0.73
R7984:Wdr25 UTSW 12 109,011,057 (GRCm38) splice site probably null
R8504:Wdr25 UTSW 12 109,026,467 (GRCm38) nonsense probably null
R9598:Wdr25 UTSW 12 108,898,687 (GRCm38) missense probably benign 0.10
Predicted Primers PCR Primer
(F):5'- CTTTGTTACAACAGCAGCCACC -3'
(R):5'- TGTCCACAGAGCCAGCAATC -3'

Sequencing Primer
(F):5'- CCACCCAGCCTCCTAAGC -3'
(R):5'- TCATACACTTGGGCAGCAG -3'
Posted On 2019-10-07