Mutagenetix > Incidental Mutation

Incidental Mutation 'R7466:Sirpb1c'

578750

Institutional Source

Beutler Lab

Gene Symbol

Sirpb1c

Ensembl Gene

ENSMUSG00000074677

Gene Name

signal-regulatory protein beta 1C

Synonyms

MMRRC Submission

045540-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.053) question?

Stock #

R7466 (G1)

Quality Score

137.008

Status

Not validated

Chromosome

Chromosomal Location

15849311-15902694 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 15886430 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Phenylalanine at position 315 (L315F)

Ref Sequence

ENSEMBL: ENSMUSP00000103989 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000050623] [ENSMUST00000108349] [ENSMUST00000108350] [ENSMUST00000108352] [ENSMUST00000108354]

AlphaFold

K7N6K7

Predicted Effect

probably damaging
Transcript: ENSMUST00000050623
AA Change: L315F

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000061216
Gene: ENSMUSG00000074677
AA Change: L315F

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
IG	37	143	3.51e-8	SMART
IGc1	163	236	4.07e-4	SMART
IGc1	266	339	2.21e-5	SMART
transmembrane domain	364	386	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000108349
AA Change: L313F

PolyPhen 2 Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000103986
Gene: ENSMUSG00000074677
AA Change: L313F

Domain	Start	End	E-Value	Type
low complexity region	15	23	N/A	INTRINSIC
IG	35	141	3.51e-8	SMART
IGc1	161	234	4.07e-4	SMART
IGc1	264	337	2.21e-5	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000108350
AA Change: L315F

PolyPhen 2 Score 0.883 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000103987
Gene: ENSMUSG00000074677
AA Change: L315F

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
IG	37	143	3.51e-8	SMART
IGc1	163	236	4.07e-4	SMART
IGc1	266	339	2.21e-5	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000108352
AA Change: L315F

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000103989
Gene: ENSMUSG00000074677
AA Change: L315F

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
IG	37	143	3.51e-8	SMART
IGc1	163	236	4.07e-4	SMART
IGc1	266	339	2.21e-5	SMART
transmembrane domain	370	392	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000108354
AA Change: L315F

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000103991
Gene: ENSMUSG00000074677
AA Change: L315F

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
IG	37	143	3.51e-8	SMART
IGc1	163	236	4.07e-4	SMART
IGc1	266	339	2.21e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000148194
AA Change: L183F

PolyPhen 2 Score 0.377 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000120527
Gene: ENSMUSG00000074677
AA Change: L183F

Domain	Start	End	E-Value	Type
IGc1	32	105	4.07e-4	SMART
IGc1	135	208	2.21e-5	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

99% (83/84)

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
AI182371	T	A	2: 34,978,753 (GRCm39)	K203*	probably null	Het
Akr1c13	T	C	13: 4,242,436 (GRCm39)		probably benign	Het
Amer3	A	G	1: 34,627,074 (GRCm39)	S438G	probably damaging	Het
Aqp9	T	A	9: 71,070,543 (GRCm39)		probably null	Het
Art4	G	T	6: 136,831,848 (GRCm39)	H98N	probably damaging	Het
Bdh1	T	C	16: 31,266,422 (GRCm39)	S70P	probably benign	Het
Ccdc61	A	C	7: 18,625,030 (GRCm39)	Y503D	probably damaging	Het
Cd180	A	T	13: 102,841,503 (GRCm39)	N183I	probably damaging	Het
Cd200r2	C	T	16: 44,729,537 (GRCm39)	A64V	probably damaging	Het
Ceacam9	A	C	7: 16,457,780 (GRCm39)	K98Q	probably benign	Het
Cep44	AACGC	A	8: 56,994,018 (GRCm39)		probably null	Het
Cfap77	G	T	2: 28,845,625 (GRCm39)	D247E	probably benign	Het
Cftr	T	C	6: 18,227,972 (GRCm39)	M388T	probably benign	Het
Chrnb1	G	A	11: 69,675,476 (GRCm39)	H493Y	probably damaging	Het
Ckap2	A	C	8: 22,667,402 (GRCm39)	M153R	probably benign	Het
Cnot6l	A	G	5: 96,278,987 (GRCm39)	V77A	probably benign	Het
Col12a1	C	T	9: 79,562,689 (GRCm39)	E1798K	possibly damaging	Het
Cth	T	A	3: 157,630,522 (GRCm39)	D49V	probably benign	Het
Ctnnb1	T	C	9: 120,784,482 (GRCm39)	S425P	probably damaging	Het
Ctnnd1	T	C	2: 84,441,129 (GRCm39)	N690S	probably benign	Het
Dennd2b	A	G	7: 109,124,553 (GRCm39)	L1096P	probably damaging	Het
Dennd4c	A	G	4: 86,692,568 (GRCm39)	D26G	probably damaging	Het
Dlg5	G	A	14: 24,295,280 (GRCm39)	P80L	probably damaging	Het
Dnai3	T	C	3: 145,761,373 (GRCm39)	D661G	probably benign	Het
Eef2k	A	G	7: 120,502,707 (GRCm39)		probably null	Het
Ephb2	C	T	4: 136,386,376 (GRCm39)	R791H	probably damaging	Het
Erh	T	C	12: 80,687,757 (GRCm39)	Y22C	probably benign	Het
F5	C	T	1: 164,020,897 (GRCm39)	T1124I	possibly damaging	Het
Fam220a	T	A	5: 143,549,226 (GRCm39)	C213S	possibly damaging	Het
Fat2	G	T	11: 55,201,258 (GRCm39)	N605K	probably damaging	Het
Ganab	C	A	19: 8,891,933 (GRCm39)	S780*	probably null	Het
Gbgt1	C	T	2: 28,392,219 (GRCm39)	P67S	probably damaging	Het
Gm17190	G	T	13: 96,219,287 (GRCm39)	G208*	probably null	Het
Grhl2	A	G	15: 37,291,860 (GRCm39)	Y316C	probably damaging	Het
H2-T10	T	C	17: 36,431,741 (GRCm39)	T38A	probably benign	Het
Ins1	A	G	19: 52,252,858 (GRCm39)		probably benign	Het
Ippk	T	C	13: 49,585,943 (GRCm39)		probably null	Het
Klc4	T	A	17: 46,950,836 (GRCm39)	I258F	probably benign	Het
Manba	C	A	3: 135,248,154 (GRCm39)	L348I	probably benign	Het
Mgam	A	G	6: 40,721,723 (GRCm39)	N347S	probably benign	Het
Myo18b	T	C	5: 112,871,758 (GRCm39)	T2108A	probably benign	Het
Naip5	A	T	13: 100,358,494 (GRCm39)	L914*	probably null	Het
Nsa2	C	T	13: 97,267,728 (GRCm39)	A242T	probably benign	Het
Nsd2	G	A	5: 34,039,491 (GRCm39)	W834*	probably null	Het
Or10q3	T	A	19: 11,847,680 (GRCm39)	D300V	possibly damaging	Het
Or5p50	A	T	7: 107,422,129 (GRCm39)	C182*	probably null	Het
Or5w1	T	C	2: 87,486,740 (GRCm39)	N175S	possibly damaging	Het
Or8s16	T	C	15: 98,211,261 (GRCm39)	M57V	probably damaging	Het
Pam	A	T	1: 97,769,972 (GRCm39)	D599E	probably damaging	Het
Phf20l1	A	G	15: 66,508,733 (GRCm39)	K864R	probably damaging	Het
Pip4p2	T	A	4: 14,912,477 (GRCm39)	Y195*	probably null	Het
Plcl2	A	G	17: 50,915,496 (GRCm39)	D835G	probably damaging	Het
Ppm1m	C	A	9: 106,073,356 (GRCm39)	A329S	probably damaging	Het
Prep	T	C	10: 45,026,534 (GRCm39)	V486A	probably benign	Het
Prkcb	A	T	7: 122,116,067 (GRCm39)	N182I	probably damaging	Het
Prkcz	A	G	4: 155,356,059 (GRCm39)	F355S	probably damaging	Het
Psg20	C	T	7: 18,418,392 (GRCm39)	S125N	probably benign	Het
Psmd12	A	G	11: 107,382,883 (GRCm39)	D234G	probably benign	Het
Pvrig-ps	A	T	5: 138,340,270 (GRCm39)	M14L	probably benign	Het
Rabgap1l	C	T	1: 160,054,054 (GRCm39)		probably null	Het
Rfc1	A	T	5: 65,432,769 (GRCm39)	C764S	probably damaging	Het
Ryr3	T	C	2: 112,757,302 (GRCm39)	D351G	probably benign	Het
Scart1	T	C	7: 139,800,619 (GRCm39)		probably null	Het
Serpinb9g	T	C	13: 33,679,150 (GRCm39)	F340S	probably benign	Het
Slc24a1	C	G	9: 64,835,686 (GRCm39)	E814Q	unknown	Het
Slc26a11	A	T	11: 119,265,328 (GRCm39)	Q355L	probably damaging	Het
Sp100	C	T	1: 85,634,960 (GRCm39)	L483F	possibly damaging	Het
Ston1	T	A	17: 88,943,329 (GRCm39)	M245K	probably benign	Het
Swap70	T	A	7: 109,873,979 (GRCm39)	D442E	probably benign	Het
Syne2	T	A	12: 76,092,960 (GRCm39)	V450D	possibly damaging	Het
Tbck	T	A	3: 132,458,324 (GRCm39)	N651K	probably damaging	Het
Timd4	A	T	11: 46,708,585 (GRCm39)	T204S	probably benign	Het
Tmem102	A	G	11: 69,695,711 (GRCm39)	L87P	probably damaging	Het
Tmprss11e	T	A	5: 86,857,339 (GRCm39)	T325S	probably benign	Het
Trpm1	G	A	7: 63,890,330 (GRCm39)	V978M	probably damaging	Het
Wdr12	A	T	1: 60,133,670 (GRCm39)	D19E	probably benign	Het
Wdr35	G	A	12: 9,055,773 (GRCm39)	V482I	probably benign	Het
Zer1	T	C	2: 29,991,496 (GRCm39)		probably null	Het
Zfp503	T	C	14: 22,036,079 (GRCm39)	D279G	probably benign	Het
Zfp870	A	T	17: 33,102,736 (GRCm39)	C198S	possibly damaging	Het
Zftraf1	C	T	15: 76,532,386 (GRCm39)	D241N	probably benign	Het
Zfyve26	C	T	12: 79,334,581 (GRCm39)	E146K	probably benign	Het
Zkscan6	T	C	11: 65,719,357 (GRCm39)	V459A	probably damaging	Het

Other mutations in Sirpb1c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01963:Sirpb1c	APN	3	15,892,937 (GRCm39)	missense	probably benign	0.06
R0094:Sirpb1c	UTSW	3	15,892,922 (GRCm39)	missense	possibly damaging	0.73
R0356:Sirpb1c	UTSW	3	15,887,309 (GRCm39)	missense	possibly damaging	0.95
R0442:Sirpb1c	UTSW	3	15,856,710 (GRCm39)	missense	probably benign	0.09
R3731:Sirpb1c	UTSW	3	15,887,287 (GRCm39)	missense	probably damaging	1.00
R4812:Sirpb1c	UTSW	3	15,887,386 (GRCm39)	missense	probably damaging	0.99
R5802:Sirpb1c	UTSW	3	15,886,240 (GRCm39)	missense	probably benign	0.00
R6315:Sirpb1c	UTSW	3	15,886,470 (GRCm39)	missense	possibly damaging	0.71
R7107:Sirpb1c	UTSW	3	15,892,941 (GRCm39)	missense	possibly damaging	0.91
R7148:Sirpb1c	UTSW	3	15,887,223 (GRCm39)	nonsense	probably null
R7349:Sirpb1c	UTSW	3	15,886,310 (GRCm39)	critical splice donor site	probably null
R7356:Sirpb1c	UTSW	3	15,886,297 (GRCm39)	missense	probably benign
R7359:Sirpb1c	UTSW	3	15,887,389 (GRCm39)	missense	probably benign	0.02
R7629:Sirpb1c	UTSW	3	15,902,559 (GRCm39)	missense	possibly damaging	0.86
R7720:Sirpb1c	UTSW	3	15,886,236 (GRCm39)	missense	probably benign	0.00
R7726:Sirpb1c	UTSW	3	15,902,550 (GRCm39)	missense	possibly damaging	0.92
R7853:Sirpb1c	UTSW	3	15,887,156 (GRCm39)	missense	probably damaging	1.00
R7886:Sirpb1c	UTSW	3	15,886,366 (GRCm39)	missense	probably benign	0.10
R8519:Sirpb1c	UTSW	3	15,902,526 (GRCm39)	missense	possibly damaging	0.72
R8847:Sirpb1c	UTSW	3	15,886,584 (GRCm39)	nonsense	probably null
R8854:Sirpb1c	UTSW	3	15,887,308 (GRCm39)	missense	possibly damaging	0.83

Predicted Primers

PCR Primer
(F):5'- ACATTTAGACATAATGGTGGGGTG -3'
(R):5'- GCCTAGGTTCCATCTATCTCAG -3'

Sequencing Primer
(F):5'- TTTAGACATAATGGTGGGGTGAAGAC -3'
(R):5'- TGGAGATCAGCCAGCAGC -3'

Posted On

2019-10-07