Mutagenetix > Incidental Mutation

Incidental Mutation 'R7492:Slc1a2'

580817

Institutional Source

Beutler Lab

Gene Symbol

Slc1a2

Ensembl Gene

ENSMUSG00000005089

Gene Name

solute carrier family 1 (glial high affinity glutamate transporter), member 2

Synonyms

GLT-1, Eaat2, GLT1, 2900019G14Rik, MGLT1, 1700091C19Rik

MMRRC Submission

045566-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.375) question?

Stock #

R7492 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

102489004-102621129 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 102570275 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Stop codon at position 184 (C184*)

Ref Sequence

ENSEMBL: ENSMUSP00000079100 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000005220] [ENSMUST00000080210] [ENSMUST00000111212] [ENSMUST00000111213] [ENSMUST00000123759]

AlphaFold

P43006

Predicted Effect

probably null
Transcript: ENSMUST00000005220
AA Change: C181*

SMART Domains

Protein: ENSMUSP00000005220
Gene: ENSMUSG00000005089
AA Change: C181*

Domain	Start	End	E-Value	Type
Pfam:SDF	43	492	8.9e-137	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000080210
AA Change: C184*

SMART Domains

Protein: ENSMUSP00000079100
Gene: ENSMUSG00000005089
AA Change: C184*

Domain	Start	End	E-Value	Type
Pfam:SDF	46	495	3e-133	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000111212
AA Change: C181*

SMART Domains

Protein: ENSMUSP00000106843
Gene: ENSMUSG00000005089
AA Change: C181*

Domain	Start	End	E-Value	Type
Pfam:SDF	43	492	9.5e-137	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000111213
AA Change: C184*

SMART Domains

Protein: ENSMUSP00000106844
Gene: ENSMUSG00000005089
AA Change: C184*

Domain	Start	End	E-Value	Type
Pfam:SDF	46	495	2e-134	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000123759

SMART Domains

Protein: ENSMUSP00000115129
Gene: ENSMUSG00000005089

Domain	Start	End	E-Value	Type
Pfam:SDF	37	157	4.5e-30	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of a family of solute transporter proteins. The membrane-bound protein is the principal transporter that clears the excitatory neurotransmitter glutamate from the extracellular space at synapses in the central nervous system. Glutamate clearance is necessary for proper synaptic activation and to prevent neuronal damage from excessive activation of glutamate receptors. Mutations in and decreased expression of this protein are associated with amyotrophic lateral sclerosis. Alternatively spliced transcript variants of this gene have been identified. [provided by RefSeq, Sep 2010]
PHENOTYPE: Mice homozygous for disruptions in this gene display spontaneous seizures often leading to death as well as a succeptibility to neuronal degeneration. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930407I10Rik	A	G	15: 81,948,560 (GRCm39)	D819G	possibly damaging	Het
Abca13	A	T	11: 9,243,167 (GRCm39)	I1677L	probably benign	Het
Ablim2	A	G	5: 35,998,673 (GRCm39)	S367G	probably benign	Het
Afdn	G	C	17: 14,068,638 (GRCm39)		probably null	Het
Aldh6a1	A	G	12: 84,483,640 (GRCm39)	L302P	probably damaging	Het
Ank3	A	G	10: 69,718,357 (GRCm39)	D536G	unknown	Het
Ankrd17	A	G	5: 90,381,807 (GRCm39)	V2454A	possibly damaging	Het
Apol7e	G	A	15: 77,601,656 (GRCm39)	E85K	possibly damaging	Het
Atmin	A	G	8: 117,683,657 (GRCm39)	D439G	probably damaging	Het
AU040320	G	T	4: 126,741,648 (GRCm39)	C952F	possibly damaging	Het
Btbd8	G	A	5: 107,658,373 (GRCm39)	E1648K	probably benign	Het
C6	A	G	15: 4,761,196 (GRCm39)	S19G	probably benign	Het
Ccdc180	A	T	4: 45,930,009 (GRCm39)		probably null	Het
Cntn1	A	C	15: 92,212,423 (GRCm39)	T862P	probably benign	Het
Col5a1	T	C	2: 27,859,812 (GRCm39)		probably null	Het
D430041D05Rik	T	C	2: 104,031,650 (GRCm39)	K964E	probably damaging	Het
Dnajc18	T	C	18: 35,819,846 (GRCm39)	Y145C	probably damaging	Het
Dsc1	C	T	18: 20,240,737 (GRCm39)	C196Y	possibly damaging	Het
Efcab11	A	C	12: 99,844,660 (GRCm39)	I58R	possibly damaging	Het
Fam81b	T	A	13: 76,419,398 (GRCm39)	I51F	probably benign	Het
Fbln1	G	A	15: 85,111,262 (GRCm39)	V139M	probably damaging	Het
Fbxw25	A	G	9: 109,493,598 (GRCm39)		probably null	Het
Fech	C	T	18: 64,600,842 (GRCm39)	W220*	probably null	Het
Fgl1	C	T	8: 41,644,624 (GRCm39)	W293*	probably null	Het
Firrm	A	G	1: 163,786,897 (GRCm39)	I724T	probably benign	Het
Foxi2	T	C	7: 135,012,301 (GRCm39)	L63P	probably damaging	Het
Frmpd1	A	G	4: 45,285,237 (GRCm39)	R1353G	possibly damaging	Het
Fthl17b	C	T	X: 8,829,043 (GRCm39)	R9Q	possibly damaging	Het
Fthl17b	C	T	X: 8,829,047 (GRCm39)	V8M	possibly damaging	Het
Galnt5	T	A	2: 57,916,048 (GRCm39)		probably null	Het
Glb1	A	T	9: 114,303,017 (GRCm39)	I618F	probably damaging	Het
Hs2st1	A	T	3: 144,141,357 (GRCm39)	M237K	probably benign	Het
Ighm	T	C	12: 113,386,293 (GRCm39)	D19G		Het
Il1f10	A	G	2: 24,182,829 (GRCm39)	D35G	probably benign	Het
Itpr2	G	A	6: 146,292,436 (GRCm39)	T419I	probably damaging	Het
Khdc1a	A	T	1: 21,420,542 (GRCm39)	E54V	possibly damaging	Het
Kif19a	A	G	11: 114,681,065 (GRCm39)	D991G	probably benign	Het
Klhl18	A	C	9: 110,257,843 (GRCm39)	Y532*	probably null	Het
Lama1	T	C	17: 68,124,646 (GRCm39)	F2902S		Het
Lrba	T	C	3: 86,571,835 (GRCm39)	S2380P	probably damaging	Het
Lrp2	T	A	2: 69,367,925 (GRCm39)	I196F	probably damaging	Het
Macf1	T	C	4: 123,369,524 (GRCm39)	K1746E	possibly damaging	Het
Megf10	T	C	18: 57,424,866 (GRCm39)	Y1002H	probably benign	Het
Megf8	A	G	7: 25,053,273 (GRCm39)	T1815A	probably benign	Het
Mtg1	T	C	7: 139,724,610 (GRCm39)	L162P	probably damaging	Het
Myo6	T	A	9: 80,195,328 (GRCm39)	Y899*	probably null	Het
Nlrp9a	A	T	7: 26,257,081 (GRCm39)	D233V	probably damaging	Het
Or10al6	A	T	17: 38,082,571 (GRCm39)	Q9L	possibly damaging	Het
Or2z2	T	A	11: 58,346,715 (GRCm39)	N20I	probably benign	Het
Or4k45	C	A	2: 111,395,166 (GRCm39)	V208L	probably benign	Het
Or6c201	T	A	10: 128,969,509 (GRCm39)	I43F	probably damaging	Het
Or8k36-ps1	T	A	2: 86,437,063 (GRCm39)	N284I	unknown	Het
Parvb	A	T	15: 84,174,651 (GRCm39)	Q148L	probably damaging	Het
Pcdhb11	C	T	18: 37,556,497 (GRCm39)	T609M	probably damaging	Het
Pcdhga3	A	T	18: 37,809,178 (GRCm39)	T544S	probably benign	Het
Pkd1	C	G	17: 24,788,715 (GRCm39)	I824M	probably benign	Het
Pkd1l2	A	T	8: 117,794,849 (GRCm39)	L370Q	probably damaging	Het
Plcb1	G	T	2: 135,093,684 (GRCm39)	E166*	probably null	Het
Pnpt1	A	G	11: 29,085,522 (GRCm39)	I138V	probably benign	Het
Pou4f3	T	C	18: 42,528,996 (GRCm39)	L313P	probably damaging	Het
Pramel21	C	A	4: 143,342,744 (GRCm39)	Q284K	not run	Het
Prep	A	G	10: 44,996,910 (GRCm39)	Y396C	probably damaging	Het
Prkd3	A	T	17: 79,269,974 (GRCm39)	C562*	probably null	Het
Prss12	T	A	3: 123,276,425 (GRCm39)	C351*	probably null	Het
Rnf41	C	A	10: 128,274,283 (GRCm39)	H312N	probably damaging	Het
Ror1	C	T	4: 100,298,256 (GRCm39)	T543I	probably benign	Het
Rreb1	G	A	13: 38,115,724 (GRCm39)	V1028I	probably benign	Het
Setd2	T	A	9: 110,423,700 (GRCm39)	S474T		Het
Slc2a4	G	A	11: 69,837,202 (GRCm39)	T78I	probably benign	Het
Slc4a4	T	A	5: 89,277,509 (GRCm39)	I317N	possibly damaging	Het
Smad9	G	A	3: 54,693,747 (GRCm39)		probably null	Het
Sst	T	C	16: 23,708,576 (GRCm39)	E85G	probably damaging	Het
Sting1	T	C	18: 35,871,766 (GRCm39)	Y162C	probably damaging	Het
Svep1	T	G	4: 58,066,468 (GRCm39)	E3205D	possibly damaging	Het
Tmc7	G	T	7: 118,141,189 (GRCm39)	S647R	probably benign	Het
Trnt1	T	C	6: 106,751,493 (GRCm39)	S157P	possibly damaging	Het
Ttc6	A	T	12: 57,719,922 (GRCm39)	H831L	probably benign	Het
Vmn1r121	A	G	7: 20,832,095 (GRCm39)	F115S	probably damaging	Het
Vwa7	A	G	17: 35,238,020 (GRCm39)	D207G	possibly damaging	Het
Vwde	C	A	6: 13,204,980 (GRCm39)	K300N	probably null	Het
Zfp418	A	G	7: 7,184,396 (GRCm39)	T120A	possibly damaging	Het
Zfp687	C	T	3: 94,914,841 (GRCm39)	R1220H	probably damaging	Het

Other mutations in Slc1a2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00572:Slc1a2	APN	2	102,607,921 (GRCm39)	missense	possibly damaging	0.55
IGL00588:Slc1a2	APN	2	102,586,346 (GRCm39)	missense	probably benign
IGL00931:Slc1a2	APN	2	102,586,457 (GRCm39)	missense	probably damaging	1.00
IGL00942:Slc1a2	APN	2	102,570,159 (GRCm39)	missense	probably damaging	1.00
IGL02100:Slc1a2	APN	2	102,586,434 (GRCm39)	missense	probably damaging	1.00
IGL02173:Slc1a2	APN	2	102,574,206 (GRCm39)	missense	probably benign	0.05
IGL02184:Slc1a2	APN	2	102,578,889 (GRCm39)	missense	probably damaging	1.00
IGL02480:Slc1a2	APN	2	102,566,411 (GRCm39)	missense	probably damaging	1.00
IGL02643:Slc1a2	APN	2	102,570,225 (GRCm39)	missense	probably benign	0.30
IGL03332:Slc1a2	APN	2	102,578,879 (GRCm39)	missense	possibly damaging	0.96
R0335:Slc1a2	UTSW	2	102,574,208 (GRCm39)	missense	probably benign
R0544:Slc1a2	UTSW	2	102,586,417 (GRCm39)	missense	probably damaging	0.99
R0570:Slc1a2	UTSW	2	102,586,352 (GRCm39)	missense	probably damaging	1.00
R1472:Slc1a2	UTSW	2	102,568,254 (GRCm39)	missense	probably damaging	1.00
R1536:Slc1a2	UTSW	2	102,607,855 (GRCm39)	missense	probably benign	0.37
R1856:Slc1a2	UTSW	2	102,607,912 (GRCm39)	missense	probably damaging	0.97
R1936:Slc1a2	UTSW	2	102,607,950 (GRCm39)	missense	probably benign	0.04
R1965:Slc1a2	UTSW	2	102,570,245 (GRCm39)	missense	probably damaging	1.00
R2270:Slc1a2	UTSW	2	102,566,339 (GRCm39)	missense	probably damaging	1.00
R2365:Slc1a2	UTSW	2	102,578,798 (GRCm39)	splice site	probably null
R2567:Slc1a2	UTSW	2	102,597,355 (GRCm39)	missense	probably damaging	1.00
R2878:Slc1a2	UTSW	2	102,591,512 (GRCm39)	missense	probably damaging	1.00
R3080:Slc1a2	UTSW	2	102,578,901 (GRCm39)	missense	probably damaging	1.00
R4716:Slc1a2	UTSW	2	102,578,883 (GRCm39)	missense	probably damaging	0.96
R4744:Slc1a2	UTSW	2	102,568,214 (GRCm39)	missense	probably benign	0.41
R5197:Slc1a2	UTSW	2	102,586,460 (GRCm39)	missense	probably benign	0.02
R5835:Slc1a2	UTSW	2	102,607,795 (GRCm39)	missense	probably damaging	1.00
R7077:Slc1a2	UTSW	2	102,607,855 (GRCm39)	missense	probably benign	0.37
R7155:Slc1a2	UTSW	2	102,597,340 (GRCm39)	missense	probably damaging	1.00
R7179:Slc1a2	UTSW	2	102,586,290 (GRCm39)	missense	probably damaging	1.00
R7455:Slc1a2	UTSW	2	102,566,299 (GRCm39)	missense	probably benign	0.16
R7818:Slc1a2	UTSW	2	102,574,301 (GRCm39)	missense	probably benign	0.06
R7868:Slc1a2	UTSW	2	102,591,530 (GRCm39)	missense	probably benign	0.06
R8143:Slc1a2	UTSW	2	102,568,230 (GRCm39)	missense	probably damaging	1.00
R8184:Slc1a2	UTSW	2	102,568,197 (GRCm39)	missense	probably damaging	1.00
R8436:Slc1a2	UTSW	2	102,586,298 (GRCm39)	missense	possibly damaging	0.65
R8508:Slc1a2	UTSW	2	102,566,430 (GRCm39)	critical splice donor site	probably null
R8830:Slc1a2	UTSW	2	102,566,360 (GRCm39)	missense	probably benign
R8951:Slc1a2	UTSW	2	102,586,353 (GRCm39)	missense	probably damaging	1.00
R9424:Slc1a2	UTSW	2	102,591,394 (GRCm39)	missense	probably damaging	1.00
X0065:Slc1a2	UTSW	2	102,568,176 (GRCm39)	missense	probably benign	0.12
Z1177:Slc1a2	UTSW	2	102,591,470 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCAGGCCTGGATGCTAAAGC -3'
(R):5'- GAGGTGATCTGATTCTAGCCTTAG -3'

Sequencing Primer
(F):5'- GCTATGGTGTATTACATGTCCACGAC -3'
(R):5'- TTCTAGCCTTAGAATACTCCAGAGC -3'

Posted On

2019-10-17