Mutagenetix > Incidental Mutation

Incidental Mutation 'R0633:Neto1'

58114

Institutional Source

Beutler Lab

Gene Symbol

Neto1

Ensembl Gene

ENSMUSG00000050321

Gene Name

neuropilin (NRP) and tolloid (TLL)-like 1

Synonyms

C130005O10Rik

MMRRC Submission

038822-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0633 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

86394952-86501897 bp(+) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to T at 86404729 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 104 (R104*)

Ref Sequence

ENSEMBL: ENSMUSP00000057340 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000058829]

AlphaFold

Q8R4I7

Predicted Effect

probably null
Transcript: ENSMUST00000058829
AA Change: R104*

SMART Domains

Protein: ENSMUSP00000057340
Gene: ENSMUSG00000050321
AA Change: R104*

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
CUB	41	155	2.06e-35	SMART
CUB	172	287	3.1e-7	SMART
LDLa	291	328	3.11e-3	SMART
transmembrane domain	341	363	N/A	INTRINSIC
low complexity region	485	497	N/A	INTRINSIC

Coding Region Coverage

1x: 99.3%
3x: 98.8%
10x: 97.4%
20x: 94.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a predicted transmembrane protein containing two extracellular CUB domains followed by a low-density lipoprotein class A (LDLa) domain. A similar gene in mice encodes a protein that plays a critical role in spatial learning and memory by regulating the function of synaptic N-methyl-D-aspartic acid receptor complexes in the hippocampus. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jan 2011]
PHENOTYPE: Mice homozygous for a null allele exhibit depressed long term potentiation, reduced NMDAR excitatory postsynaptic potentiation, and decreased spartial learning and working memory. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2810474O19Rik	A	T	6: 149,325,701	I82L	probably benign	Het
4921530L21Rik	T	G	14: 95,881,943	N45K	probably damaging	Het
4933408B17Rik	A	G	18: 34,586,266	V167A	possibly damaging	Het
Adamts8	A	T	9: 30,943,511	R18S	probably damaging	Het
Adgb	G	A	10: 10,391,729	A923V	probably benign	Het
Aldh1a3	A	G	7: 66,400,222	V416A	probably damaging	Het
Alox5	C	T	6: 116,420,384	G280R	probably damaging	Het
Anapc5	A	T	5: 122,800,632	Y360N	probably damaging	Het
Apbb1	C	T	7: 105,558,963	V685I	probably damaging	Het
Apc2	C	A	10: 80,307,455	A463E	probably damaging	Het
Arhgap21	C	T	2: 20,855,387	W1170*	probably null	Het
Atat1	G	A	17: 35,901,423	R305C	probably damaging	Het
Cars2	T	C	8: 11,550,511	D56G	probably benign	Het
Cdc42bpb	T	C	12: 111,345,555	I108V	probably damaging	Het
Cftr	T	A	6: 18,305,980	I1255K	probably damaging	Het
Ckap5	T	C	2: 91,550,743	L148P	probably damaging	Het
Cntn4	A	G	6: 106,679,248		probably null	Het
Cpe	G	A	8: 64,609,203	P273L	probably damaging	Het
Cpsf7	A	G	19: 10,531,782	D19G	probably benign	Het
Ddx25	C	A	9: 35,545,972	R349L	probably damaging	Het
Depdc7	T	C	2: 104,722,881	D446G	probably benign	Het
Det1	T	A	7: 78,843,935	N107I	probably benign	Het
Dock6	A	T	9: 21,844,417	D170E	probably benign	Het
Dvl1	C	T	4: 155,858,295	L673F	probably damaging	Het
Gucy1b1	A	T	3: 82,045,460	I222K	probably benign	Het
Hfm1	T	C	5: 106,917,601	T71A	possibly damaging	Het
Ikzf1	A	G	11: 11,769,223	E310G	probably damaging	Het
Impg1	T	C	9: 80,394,155	E163G	possibly damaging	Het
Itpr2	G	T	6: 146,374,456	H426Q	probably damaging	Het
Itpripl2	C	T	7: 118,490,256	G360D	probably benign	Het
Kif14	C	T	1: 136,527,305	R1572C	probably damaging	Het
L3mbtl3	A	T	10: 26,302,685	H568Q	unknown	Het
Lgi2	A	G	5: 52,554,460	Y173H	probably damaging	Het
Lpar5	A	C	6: 125,081,991	Y225S	probably benign	Het
Lpin3	A	G	2: 160,903,974	H675R	probably damaging	Het
Lrp2	C	A	2: 69,448,120	G3963V	probably damaging	Het
Man1a2	G	T	3: 100,684,575	D13E	possibly damaging	Het
Map1a	T	C	2: 121,308,014	V2753A	probably damaging	Het
Mitf	C	A	6: 98,003,904	N97K	probably damaging	Het
Msh2	A	G	17: 87,672,810		probably null	Het
Msr1	T	C	8: 39,620,000	E170G	probably damaging	Het
Myrip	C	A	9: 120,388,236	R79S	probably damaging	Het
Nek10	G	A	14: 14,857,782		probably null	Het
Nom1	A	C	5: 29,451,100	K821T	probably damaging	Het
Nrxn1	A	G	17: 90,704,181	V340A	probably damaging	Het
Nxpe4	A	T	9: 48,396,597	I334F	probably benign	Het
Olfr1043	T	A	2: 86,162,091	N286I	probably damaging	Het
Olfr1065	C	T	2: 86,445,129	M284I	probably benign	Het
Olfr1247	T	C	2: 89,609,374	M243V	probably benign	Het
Olfr1489	T	C	19: 13,633,336	V75A	probably damaging	Het
Olfr382	A	G	11: 73,516,927	S91P	probably benign	Het
Olfr705	T	C	7: 106,713,977	K235E	probably benign	Het
Padi4	A	G	4: 140,757,585	S322P	probably damaging	Het
Peli3	A	G	19: 4,941,782	Y44H	probably damaging	Het
Prdm4	A	G	10: 85,907,903	S163P	probably damaging	Het
Prom2	T	C	2: 127,539,525	D227G	probably benign	Het
Ptgfr	C	T	3: 151,801,763	R321H	probably benign	Het
Rgs3	G	A	4: 62,625,906	R136H	probably damaging	Het
Rgsl1	T	G	1: 153,844,107	N3T	possibly damaging	Het
Rif1	T	C	2: 52,112,563	S2010P	probably benign	Het
Rngtt	T	C	4: 33,368,690	F408L	probably damaging	Het
Rtn3	T	G	19: 7,457,593	T326P	probably benign	Het
Slc18b1	A	C	10: 23,806,038	M167L	probably benign	Het
Slc22a26	A	G	19: 7,788,210		probably null	Het
Slitrk6	T	C	14: 110,751,885	D130G	probably damaging	Het
Snap47	A	G	11: 59,428,613	V233A	probably benign	Het
Sumf1	A	C	6: 108,144,671	Y158D	probably damaging	Het
Tbc1d15	A	T	10: 115,220,310	H252Q	probably benign	Het
Thsd7b	T	C	1: 130,188,526	S1339P	possibly damaging	Het
Tmem45a2	T	C	16: 57,049,414	I56V	probably benign	Het
Ttc21b	A	G	2: 66,236,233	S359P	probably benign	Het
Ttc27	T	C	17: 74,729,977	I215T	probably benign	Het
Ttn	C	T	2: 76,724,195	V30759I	possibly damaging	Het
Vdac3	T	C	8: 22,580,388	N168S	probably damaging	Het
Wdr7	T	C	18: 63,865,300	V1106A	probably benign	Het
Wrap73	T	A	4: 154,142,491	F16Y	probably damaging	Het
Zfat	C	A	15: 68,180,803	D381Y	probably damaging	Het

Other mutations in Neto1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00764:Neto1	APN	18	86498812	missense	probably damaging	0.98
IGL01505:Neto1	APN	18	86473689	missense	possibly damaging	0.82
IGL01511:Neto1	APN	18	86395908	missense	possibly damaging	0.96
IGL02704:Neto1	APN	18	86473823	missense	probably damaging	1.00
IGL03072:Neto1	APN	18	86498589	missense	probably benign	0.23
R0119:Neto1	UTSW	18	86461320	missense	probably benign	0.17
R0136:Neto1	UTSW	18	86461320	missense	probably benign	0.17
R0299:Neto1	UTSW	18	86461320	missense	probably benign	0.17
R0603:Neto1	UTSW	18	86473660	missense	possibly damaging	0.95
R0657:Neto1	UTSW	18	86461320	missense	probably benign	0.17
R1395:Neto1	UTSW	18	86398019	splice site	probably benign
R1648:Neto1	UTSW	18	86500054	missense	probably damaging	1.00
R1852:Neto1	UTSW	18	86395884	start codon destroyed	probably null	0.53
R2249:Neto1	UTSW	18	86461274	missense	probably benign	0.02
R4418:Neto1	UTSW	18	86404856	missense	probably benign
R4476:Neto1	UTSW	18	86404673	missense	probably damaging	0.98
R4676:Neto1	UTSW	18	86398302	missense	possibly damaging	0.47
R5095:Neto1	UTSW	18	86398281	missense	probably benign
R5282:Neto1	UTSW	18	86404873	missense	probably damaging	1.00
R5337:Neto1	UTSW	18	86398309	missense	probably benign	0.00
R5400:Neto1	UTSW	18	86395908	missense	possibly damaging	0.86
R5435:Neto1	UTSW	18	86398263	missense	probably benign	0.00
R5632:Neto1	UTSW	18	86498643	missense	probably benign	0.00
R5755:Neto1	UTSW	18	86499094	missense	probably damaging	0.99
R6272:Neto1	UTSW	18	86494815	missense	probably damaging	1.00
R6486:Neto1	UTSW	18	86461246	missense	probably benign
R6505:Neto1	UTSW	18	86498574	missense	possibly damaging	0.81
R6526:Neto1	UTSW	18	86498748	missense	possibly damaging	0.47
R6582:Neto1	UTSW	18	86494860	nonsense	probably null
R6887:Neto1	UTSW	18	86498635	missense	probably benign	0.16
R7452:Neto1	UTSW	18	86498931	missense	probably benign
R7469:Neto1	UTSW	18	86498688	missense	probably benign
R7795:Neto1	UTSW	18	86461073	missense	probably benign	0.00
R8912:Neto1	UTSW	18	86461048	missense	probably damaging	0.98
R9191:Neto1	UTSW	18	86498656	missense	probably damaging	1.00
R9196:Neto1	UTSW	18	86395840	start gained	probably benign
R9384:Neto1	UTSW	18	86395840	start gained	probably benign
R9597:Neto1	UTSW	18	86404696	missense	possibly damaging	0.95
R9674:Neto1	UTSW	18	86473702	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GGTGCTCTTTAGCGAACGTATCCC -3'
(R):5'- TGTGTTTCAGGTGACCACACTGAC -3'

Sequencing Primer
(F):5'- CAACAGTAAGCATCTTCTTCTGTG -3'
(R):5'- AGGTGACCACACTGACTTTTG -3'

Posted On

2013-07-11